ID: uc010dgt.2_intron_0_0_chr17_73997049_f
GENE: (1)
chr17:73996999-73997542+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(8)
B-CELL 		(5)
BRAIN 		(8)
BREAST 		(22)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(2)
HELA 		(8)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(24)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CGCCATGTGTACCCAGAGCCTGGGACTGGCTGGGCTGGGCAGTGACCCAGGTGGGAAAGGGTGGTCTTGCCCTCTAAGGCCCGGCACAAGTGAGAGGCCTGGGGGTCCATGTTGGGCTGGGCTGGGCGAGGGGTGGTCTCTGACTTCCTGGGGGTTCTGGCTGGGATGGGCAGGGGGCTGGGTGGGAGAGTGTGGGCCCTGCCCTCCGAGGCCGGGCATGGGCGAGAAGCCTGGGGGTCCTGGCTGAACTGGGCTGGGTGAAGGGGGCCCCCTGACCCCCTTGGGGTCCGGGCTGGGCTGGGTGAGGGGCGGTTTCCGACCCCCAGCCAGGTTCCCAGGCAGGATGAGCTGGGGTTGGGGTGGCTAGGCCGTGGGCCTTGGGAGCTGGGCAGTCTGGGCTGGGCTGGGCTGGGCAGGGCGCCACATGGAAGCTGGAGGAGCAACGGGAGCGCTGGGCGTGGGGTGCAAATTGCCCGGTGCCTTCTGTTTCCCAGGCAGCTCTGTGGCCATGGATATGTTCCAGAAGGTAGAGAAGATCGGAGAG
..........................................................................................................................................................................................................................................................................................................................................................................................................((((..((((...(((((((((.(((((.((((...(((.....)))..(((.....)))..)))).)))))...))))))))))))).......))))...................................................
..........................................................................................................................................................................................................................................................................................................................................................................................................395................................................................................................494................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSE20417(GSM514985)
Colon and lung cancer pool. 		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532880(GSM532880)
G659T. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR038855(GSM458538)
D10. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGC.......................................................................................22143.0043.0041.00----------------------1.001.00----------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGCG......................................................................................23125.0025.0025.00----------------------------------------------------------------------------------------------
...................................................................................................................GCTGGGCTGGGCGAGTATA..........................................................................................................................................................................................................................................................................................................................................................................................................................1923.000.00-9.0010.00--1.00----------2.00---1.00--------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGCGT.....................................................................................24120.0020.0019.00-------------------------------------------1.00--------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGG.........................................................................................20111.0011.00----1.00------2.001.00-2.00--------------1.00-------------------------------------1.00-1.001.00------1.00-----------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGG........................................................................................2119.009.004.00---1.00------------------------------------------------1.00--1.00-1.00-1.00----------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGAA......................................................................................2318.009.00--------4.00-4.00------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGCGTT....................................................................................2516.0020.006.00----------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGAGCAACGGGAGCGCTGGGCAATT...................................................................................295.000.005.00----------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGCT......................................................................................2315.0043.005.00----------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGCGA.....................................................................................2414.0025.004.00----------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTGGGCTGGGCTGGGC..................................................................................................................................2004.004.00---4.00-------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCT...........................................................................................1814.004.00----1.00-------2.00---------1.00------------------------------------------------------------------------
.........................................................................................................................................................GTTCTGGCTGGGATGGGC.....................................................................................................................................................................................................................................................................................................................................................................................1813.003.00-------------3.00---------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTG..........................................................................................1913.003.00-1.00--------------------1.00-------------------1.00----------------------------------------------------
...................................................................................................................GCTGGGCTGGGCGAGTATT..........................................................................................................................................................................................................................................................................................................................................................................................................................193.000.00-1.00--1.001.00-----------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCTGGGCTGGGCTGGGCGA................................................................................................................................2302.001.00----------------1.00-----------------------------------------------------------1.00------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGCGTA....................................................................................2512.0020.00------2.00----------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGCGAT....................................................................................2512.0025.002.00----------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGAAT.....................................................................................2412.009.002.00----------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGCAT.....................................................................................2412.0043.002.00----------------------------------------------------------------------------------------------
..................................................................................................................GGCTGGGCTGGGCGAGTATA..........................................................................................................................................................................................................................................................................................................................................................................................................................202.000.00-2.00---------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTGGGCTGGGCTGGGCAGAAA.............................................................................................................................252.000.00---------------------2.00-------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTGGGCTGGGCTGGGCAAA...............................................................................................................................232.000.00---------1.00-------1.00-----------------------------------------------------------------------------
...................................................................................................................GCTGGGCTGGGCGAGGATA..........................................................................................................................................................................................................................................................................................................................................................................................................................192.000.00-----------1.00--1.00--------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................AGGATGAGCTGGGGTTGGGGGAGG....................................................................................................................................................................................242.000.00-------2.00---------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGA.......................................................................................2212.009.00---------------------------------------1.00-------1.00-----------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTCCAGAAGGTAGAGAAGA........2312.002.00---------2.00-------------------------------------------------------------------------------------
...............GAGCCTGGGACTGGCTGGGCTGGGCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002.00-------------------2.00---------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCTGGGCTGGGCTGGGCAGAAA.............................................................................................................................262.000.00-------------------------------1.00-----------------------1.00---------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCTGGGCTGGGCTGGGCAAAA..............................................................................................................................252.000.00-------------------------------1.00-----------1.00---------------------------------------------------
................................................................................................................................................................................................................AGGCCGGGCATGGGCCTT..............................................................................................................................................................................................................................................................................................................................181.000.00----1.00------------------------------------------------------------------------------------------
........................................................................................................GTCCATGTTGGGCTGGGCTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-----------------------------------1.00-----------------------------------------------------------
..............................................................................................................................................ACTTCCTGGGGGTTCTGGCTGGGATGGGC.....................................................................................................................................................................................................................................................................................................................................................................................2911.001.00--------------------------------1.00--------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGTAGAGAAGATCGGAGAG2311.001.00----------------------------------------1.00------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCTGGGCTGGGCTGGGC..................................................................................................................................2101.001.00---1.00-------------------------------------------------------------------------------------------
..........................TGGCTGGGCTGGGCAGTGACCCAGGCGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................291.000.00-------1.00---------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................CGTGGGCCTTGGGAGCTGGGCAGTCTGG...................................................................................................................................................2811.001.00----------------------------------1.00------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGC............................................................................................1711.001.00----------------------------------------------------1.00------------------------------------------
..........................TGGCTGGGCTGGGCAGTGACCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00------------------------------------------------------------------1.00----------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAGGCAGCTCTGTTGG.....................................191.000.00----------------------------1.00------------------------------------------------------------------
................................................................................................................................................................................GCTGGGTGGGAGAGTTAA..............................................................................................................................................................................................................................................................................................................................................................181.000.00------------------1.00----------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGCGTTTCT.................................................................................2811.0020.00-----------------------1.00-----------------------------------------------------------------------
...................................................................................................................GCTGGGCTGGGCGAGTAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-1.00---------------------------------------------------------------------------------------------
...................CTGGGACTGGCTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1501.001.00---1.00-------------------------------------------------------------------------------------------
...................................................................................................................GCTGGGCTGGGCGAGGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-1.00---------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGCGTGGGGTGCCGC...........................................................................191.000.00------------------------1.00----------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................CCGGGCTGGGCTGGG..................................................................................................................................................................................................................................................1501.001.00------1.00----------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGAT......................................................................................2311.009.00-----------------------------------------------------------1.00-----------------------------------
...................................................................................................................................................................................................................................................................................................GCTGGGCTGGGTGAGTATC..........................................................................................................................................................................................................................................191.000.00--1.00--------------------------------------------------------------------------------------------
..................................................................................................................GGCTGGGCTGGGCGAATA............................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-----1.00-----------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGAAA......................................................................................2311.0011.00-------------------------------------------------------------------------1.00---------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGCGC.....................................................................................2411.0025.001.00----------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGAGCGCTGGGCGTGGGGTAGAA............................................................................261.000.00---------1.00-------------------------------------------------------------------------------------
.................................................................................................................................................................TGGGATGGGCAGGGGAGCG............................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------------------------1.00--------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................GGCAGTCTGGGCTGGGCATT.........................................................................................................................................201.000.00-1.00---------------------------------------------------------------------------------------------
..................................................................................................................GGCTGGGCTGGGCGAGTATT..........................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00------------------------------------------------------------------------------1.00----------------
..................................................................................................................................................................................................................................................................................................................................................................................GTGGGCCTTGGGAGCGG.............................................................................................................................................................171.000.00------------------1.00----------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCTGGGCTGGGCAGGGGG............................................................................................................................221.000.00---------------------------------------------------1.00-------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCAGAAGGTAGAGAAG.........2011.001.00--------------------------------------------------------------1.00--------------------------------
.....................................................................................................................................................GGGGGTTCTGGCTGGCT..........................................................................................................................................................................................................................................................................................................................................................................................171.000.00-------------------------------------------------------------1.00---------------------------------
..............................................................................................................................................................................................................................................................................................TCCGGGCTGGGCTGGGTGAGGGGCGGTTTC....................................................................................................................................................................................................................................3011.001.00--------------------------------------------------------------------------1.00--------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGTAGAGAAGATCTAT...211.000.00--------------------------------------------------1.00--------------------------------------------
.................................................................................................................................................................................................................................................GGCTGAACTGGGCTGGGTG............................................................................................................................................................................................................................................................................................1911.001.00-1.00---------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGCGCTT...................................................................................2611.0025.00---------------1.00-------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTGGGCTGGGCA.................................................................................................................................1601.001.00------1.00----------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................TCTGGGCTGGGCTGGGCTGGGTT.................................................................................................................................231.000.00--------------------------------------1.00--------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGCGACT...................................................................................2611.0025.00---------------1.00-------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................CTGGGCTGGGTGAGGAAAC.........................................................................................................................................................................................................................................191.000.00----------------------------------------------1.00------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGTAT......................................................................................2311.0011.00--------------------1.00--------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGCGTTA...................................................................................2611.0020.001.00----------------------------------------------------------------------------------------------
.......................................................................................................................GGCTGGGCGAGGGGTGGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00-----------------------------------------------------------------1.00-----------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGTT.......................................................................................2211.0011.00------------------------------------------------------------------------1.00----------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGAA.......................................................................................2211.0011.00------------------------------------------------1.00----------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGCAATT...................................................................................2611.0043.00---------------------------------------------1.00-------------------------------------------------
..................................................................................................................GGCTGGGCTGGGCGATTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----1.00-----------------------------------------------------------------------------------------
.............................................................................................................................GCGAGGGGTGGTCTCCC..................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00-------------------------------------------------------------------------------1.00---------------
..............................................................................................................................................................................GGGCTGGGTGGGAGATC.................................................................................................................................................................................................................................................................................................................................................................171.000.00------------------------------------------------------1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCAACGGGAGCGCTGGGCGTTCT..................................................................................2711.0020.00---------------1.00-------------------------------------------------------------------------------
.........................CTGGCTGGGCTGGGCGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------1.00------------------------------------------------------------------
...............GAGCCTGGGACTGGCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50---------------------------------------------------------------------------------0.50-------------
.............................................................................................................................................................................................................................................................................................................................................CCCAGGCAGGATGAGC...................................................................................................................................................................................................1630.330.33----------------------------------0.33------------------------------------------------------------
.....................................................................................................................................................................ATGGGCAGGGGGCTGG...........................................................................................................................................................................................................................................................................................................................................................................1680.250.25-------------------------------------------------------------------------------------0.25---------
.........................................................................................................................................................................................................................................................................................TGGGGTCCGGGCTGGG.......................................................................................................................................................................................................................................................1650.200.20-------------------------------------------------------------------------------------------0.20---
....................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTGGGCAGGGCG............................................................................................................................1670.140.14----------------------------------------------------------------------------------------------0.14
............................................................................................................................................................................................................................................GTCCTGGCTGAACTG.....................................................................................................................................................................................................................................................................................................1570.140.14--------------------------------------------------------------------------------------------0.14--
...................................................................................................................................................................................................................................................................................................................................................................................TGGGCCTTGGGAGCTG.............................................................................................................................................................1680.120.12-----------------0.12-----------------------------------------------------------------------------

Antisense strand
CGCCATGTGTACCCAGAGCCTGGGACTGGCTGGGCTGGGCAGTGACCCAGGTGGGAAAGGGTGGTCTTGCCCTCTAAGGCCCGGCACAAGTGAGAGGCCTGGGGGTCCATGTTGGGCTGGGCTGGGCGAGGGGTGGTCTCTGACTTCCTGGGGGTTCTGGCTGGGATGGGCAGGGGGCTGGGTGGGAGAGTGTGGGCCCTGCCCTCCGAGGCCGGGCATGGGCGAGAAGCCTGGGGGTCCTGGCTGAACTGGGCTGGGTGAAGGGGGCCCCCTGACCCCCTTGGGGTCCGGGCTGGGCTGGGTGAGGGGCGGTTTCCGACCCCCAGCCAGGTTCCCAGGCAGGATGAGCTGGGGTTGGGGTGGCTAGGCCGTGGGCCTTGGGAGCTGGGCAGTCTGGGCTGGGCTGGGCTGGGCAGGGCGCCACATGGAAGCTGGAGGAGCAACGGGAGCGCTGGGCGTGGGGTGCAAATTGCCCGGTGCCTTCTGTTTCCCAGGCAGCTCTGTGGCCATGGATATGTTCCAGAAGGTAGAGAAGATCGGAGAG
..........................................................................................................................................................................................................................................................................................................................................................................................................((((..((((...(((((((((.(((((.((((...(((.....)))..(((.....)))..)))).)))))...))))))))))))).......))))...................................................
..........................................................................................................................................................................................................................................................................................................................................................................................................395................................................................................................494................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSE20417(GSM514985)
Colon and lung cancer pool. 		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532880(GSM532880)
G659T. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR038855(GSM458538)
D10. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATGGATATGTACC....................... 182.500.00--0.25---------------------------0.75------0.50------------------------------------------0.50------0.250.25------
............................................................................................................................................................................................................................................................................................GGTCCGGGCTGGGCTGGCA................................................................................................................................................................................................................................................. 192.000.00-------------------------2.00---------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATGGATATGTCA........................ 182.000.00---------------------------------2.00-------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATCCATGGCCACAGAGCTGC........................... 2312.002.00--------------------------1.00--------------------------------------------1.00-----------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATGGATATGTACCC...................... 191.250.00------------------------------1.25----------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................TTCCGACCCCCAGCCAGGTC................................................................................................................................................................................................................... 201.000.00-----------------------------1.00-----------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCCCGTTGCTCCTCCAGCT............................................................................................. 2211.001.00--------------------------1.00--------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGTTCCAGAAGGGAT.............. 191.000.00------------------------------------1.00----------------------------------------------------------
................................................................................................................................................................................GCTGGGTGGGAGAGTGAAC............................................................................................................................................................................................................................................................................................................................................................. 191.000.00-----------------------------------------1.00-----------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCTCTACCTTCTGGA....... 1911.001.00----------------------------------------------------------------1.00------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATCCATGGCCA.......................... 1541.001.00-------------------------------------0.75--------------------------------------------0.25------------
............................................................................................................................................................................................................................................GTCCTGGCTGAACTGGGCAAT............................................................................................................................................................................................................................................................................................... 211.000.00---------------------------------------------------------1.00-------------------------------------
....................................................................................................................CTGGGCTGGGCGAGGGGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................ 201.000.00-----------------1.00-----------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCTGGGCGTGGGGTT............................................................................... 181.000.00---------------------------1.00-------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................ATGAGCTGGGGTTGGGACGT..................................................................................................................................................................................... 201.000.00---------------------------1.00-------------------------------------------------------------------
............................................................................................................................................................................GGGGGCTGGGTGGGAGAGTCGAG............................................................................................................................................................................................................................................................................................................................................................. 231.000.00-------1.00---------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCACGCCCAGCGCTCCCGTTGC................................................................................. 2411.001.00---------------------------------------------------------------------------1.00-------------------
.........................................................AGGGTGGTCTTGCCCAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00---------------------------------------------------------------1.00-------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................CAGCCCAGCCCAGACTGC.......................................................................................................................................... 1811.001.00-------------------------------------------------1.00---------------------------------------------
...................................................................................................................................................................GGATGGGCAGGGGGCTGGGTT........................................................................................................................................................................................................................................................................................................................................................................ 211.000.00--------------------------------------------------------------------1.00--------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATGGATATGTACCT...................... 190.750.00--0.25-------------------------------------------------------------------------------0.25-------0.25----
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATGGCCACAGAG.............................. 1630.670.67-----------------------------------0.33-----------------------------------------------0.33-----------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATGGCCACAGAGCT.............................. 1830.330.33------------------------------------------------------------------------------------0.33----------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATGGATATGTAA........................ 170.250.00------------------------------------0.25----------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATGGATATGTAC........................ 170.250.00-----------------------------------------------------------------------------------------0.25-----
..............................................CACCCTTTCCCACCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1740.250.25--------------------------------------------------------------------------------------0.25--------
..................................................................................................AACATGGACCCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................... 1570.140.14---------------------------------------------------------------------------------------------0.14-