ID: uc010czd.2_intron_4_0_chr17_41332835_f.5p
GENE: (5)
chr17:41332785-41333034+


(1)
AGO1.ip
(1)
AGO2.ip
(3)
B-CELL
(2)
BRAIN
(3)
BREAST
(18)
CELL-LINE
(1)
CERVIX
(2)
HEART
(1)
HELA
(6)
LIVER
(1)
OTHER
(5)
SKIN

Sense strand
CATGGTGTATATTTTTTGTTCTTTTAGGAGAATATGAAGAAGCGCTTAAGGTAATGATTATTTAATCTCATTTTTAAATAATTTAAAAAATATTATTATGGGTTGGTTTTTTTTCTTTTTTTGAGATGAGGTTGTGCTCTGTCATCCAGGCTGGTGTGCAGTGGCACAATCTGGGGTTGCTGCAGTCTTCACCTCCCAGGCTTAAGTGATCCTCCCACCTCAGCCTCCCGAGTAGCTGGAACTACAGAAA
....................................................................................................(((..........((((.....))))..((((((((((((((((((......)))).)))).))))))))))......))).....................................................................
.................................................................................................98....................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040034(GSM532919)
G001N. (cervix)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
GSM956925PAZD5SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR038855(GSM458538)
D10. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR038854(GSM458537)
MM653. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029131(GSM416760)
MCF7. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
......................................................................................................TTGGTTTTTTTTCTTTTTTTGGC.............................................................................................................................2316.000.0010.006.00-------------------------------------------
......................................................................................................TTGGTTTTTTTTCTTTTTTTGGCT............................................................................................................................245.000.001.004.00-------------------------------------------
.......................................................................................................TGGTTTTTTTTCTTTTTGGC...............................................................................................................................204.000.004.00--------------------------------------------
......................................................................................................TTGGTTTTTTTTCTTTTTTGGC..............................................................................................................................224.000.001.003.00-------------------------------------------
.........................AGGAGAATATGAAGAAGCGCTT...........................................................................................................................................................................................................2214.004.00--3.00--------------------1.00---------------------
.......................................................................................................TGGTTTTTTTTCTTTTTTTGGC.............................................................................................................................224.000.003.00--------------1.00-----------------------------
................................................................................................................................................................................................................ATCCTCCCACCTCAGCCTCCCGGC..................243.000.003.00--------------------------------------------
......................................................................................................TTGGTTTTTTTTCTTTTTGGC...............................................................................................................................213.000.001.002.00-------------------------------------------
.......................................................................................................TGGTTTTTTTTCTTTTTTGGC..............................................................................................................................212.000.001.001.00-------------------------------------------
......................................................................................................TTGGTTTTTTTTCTTTTTTAAAC.............................................................................................................................232.000.002.00--------------------------------------------
..................................................................................................................................................................................................................................CCCGAGTAGCTGGAACTAC.....1902.002.00---1.00-----------------------------1.00-----------
......................................................................................................TTGGTTTTTTTTCTTTTTTTAAAC............................................................................................................................242.000.00-2.00-------------------------------------------
..................................................................................................................................................................GGCACAATCTGGGGTAGA......................................................................182.000.00----2.00----------------------------------------
...........................GAGAATATGAAGAAGCGCT............................................................................................................................................................................................................1912.002.00------1.00------------------1.00-------------------
....................................................................................AAAAAATATTATTATGGGTTGGTTT.............................................................................................................................................2511.001.00--1.00------------------------------------------
..............................................................................................................................................................................................................TGATCCTCCCACCTCAGCCTCG......................221.000.00-----------------1.00---------------------------
......................TTTAGGAGAATATGAAGAAGCGCTTAAG........................................................................................................................................................................................................2811.001.00----------------------------1.00----------------
...............................................................................................................................................ATCCAGGCTGGTGTGCGGCG.......................................................................................201.000.00-1.00-------------------------------------------
...........................GAGAATATGAAGAAGCGCTTAAGGC......................................................................................................................................................................................................251.000.00------------------------------1.00--------------
........ATATTTTTTGTTCTTTTAAG..............................................................................................................................................................................................................................201.000.00-------1.00-------------------------------------
.........................................................................................................................TGAGATGAGGTTGTGCTC...............................................................................................................1811.001.001.00--------------------------------------------
......................................................................................................TTGGTTTTTTTTCTTTTTTTAAA.............................................................................................................................231.000.00-1.00-------------------------------------------
.........................................................................................................GTTTTTTTTCTTTTTTTGAATGC..........................................................................................................................231.000.001.00--------------------------------------------
...............................................................................................................................................................................................................................CCTCCCGAGTAGCTGGAACT.......2001.001.00-------------------------------1.00-------------
......................................................................................................TTGGTTTTTTTTCTTTTTTTCTGG............................................................................................................................241.000.001.00--------------------------------------------
......................................................................................................TTGGTTTTTTTTCTTTTTTTGGCGG...........................................................................................................................251.000.001.00--------------------------------------------
.........................................................................................................GTTTTTTTTCTTTTTTTGGCTC...........................................................................................................................221.000.001.00--------------------------------------------
......................................................................................................TTGGTTTTTTTTCTTTTTTTGACTTG..........................................................................................................................261.000.00-1.00-------------------------------------------
..................................................................................................................................................................................................................................CCCGAGTAGCTGGAACTACA....2001.001.00---1.00-----------------------------------------
.......................................................................................................TGGTTTTTTTTCTTTTTTTCGG.............................................................................................................................221.000.001.00--------------------------------------------
..........................................................................................................................................................................................................................................GCTGGAACTACAGAAACTGG201.000.00----------------------------------1.00----------
..........................................................................................................TTTTTTTTCTTTTTTTGAGATCG.........................................................................................................................231.000.001.00--------------------------------------------
.......................................................................................................TGGTTTTTTTTCTTTTTTTGG..............................................................................................................................211.000.001.00--------------------------------------------
......................................................................................................TTGGTTTTTTTTCTTGGC..................................................................................................................................181.000.001.00--------------------------------------------
.........................AGGAGAATATGAAGAAGCG..............................................................................................................................................................................................................1911.001.00--------------------------------------1.00------
.......................................................................................................TGGTTTTTTTTCTTTTTCGGC..............................................................................................................................211.000.001.00--------------------------------------------
............................................................................................................................................................................................................AGTGATCCTCCCACCTCAGCCTCCCGCCGC................301.000.00-1.00-------------------------------------------
......................................................................................................TTGGTTTTTTTTCTTTTTTTAGAC............................................................................................................................241.000.00-1.00-------------------------------------------
..................................................................................................................................................CAGGCTGGTGTGCAGTGGGTCG..................................................................................221.000.00------------------------------------------1.00--
.......................................................................................................................................................................................................GCTTAAGTGATCCTCCCGACA..............................211.000.00---------------------------1.00-----------------
.........................................................................................................GTTTTTTTTCTTTTTTTGGATA...........................................................................................................................221.000.001.00--------------------------------------------
.........................AGGAGAATATGAAGAAGCGCTTA..........................................................................................................................................................................................................2311.001.00------1.00--------------------------------------
................................................................................................................................................................................................................ATCCTCCCACCTCAGCCTCCCGAGTAGCGGAG..........321.000.001.00--------------------------------------------
.......................................................................................................TGGTTTTTTTTCTTTTTGCC...............................................................................................................................201.000.001.00--------------------------------------------
.......................................................................................................TGGTTTTTTTTCTTTTTTTGGCTT...........................................................................................................................241.000.00-1.00-------------------------------------------
.......................................................................................................TGGTTTTTTTTCTTTTTTTGGTT............................................................................................................................231.000.001.00--------------------------------------------
....................................................................................................................................................................................................................................CGAGTAGCTGGAACTCTG....181.000.00------------------1.00--------------------------
......................................................................................................TTGGTTTTTTTTCTTTTTTTGGCC............................................................................................................................241.000.00-1.00-------------------------------------------
.........................AGGAGAATATGAAGAAGCGCT............................................................................................................................................................................................................2111.001.00--1.00------------------------------------------
.......................................................................................................TGGTTTTTTTTCTTTTTTTGTCTT...........................................................................................................................241.000.00-1.00-------------------------------------------
.....................................................................................................GTTGGTTTTTTTTCTTTTTTTTCTT............................................................................................................................251.000.00----------------------------------------1.00----
................................TATGAAGAAGCGCTTAAGAT......................................................................................................................................................................................................201.000.00-----------------------------------1.00---------
....................................................................CATTTTTAAATAATTTAAAAAATATTATTATG......................................................................................................................................................3211.001.00-------------------------------------------1.00-
......................................................................................................TTGGTTTTTTTTCTTTAAAC................................................................................................................................201.000.001.00--------------------------------------------
.....................................................................................................GTTGGTTTTTTTTCTTTTTTTTAAG............................................................................................................................251.000.00-1.00-------------------------------------------
......................................................................................................TTGGTTTTTTTTCTTGGCT.................................................................................................................................191.000.00-1.00-------------------------------------------
..................................................................................................................................................................................................................................CCCGAGTAGCTGGAACTACAG...2101.001.00---1.00-----------------------------------------
........................................................................................................GGTTTTTTTTCTTTTTGTCC..............................................................................................................................201.000.001.00--------------------------------------------
..................................................................................................................................................CAGGCTGGTGTGCAGTGGCAAC..................................................................................221.000.00----------------1.00----------------------------
.......................................................................................................TGGTTTTTTTTCTTTTTTTGGTTT...........................................................................................................................241.000.00-1.00-------------------------------------------
......................................................................................................TTGGTTTTTTTTCTTTTTTGGCT.............................................................................................................................231.000.001.00--------------------------------------------
.........................AGGAGAATATGAAGAAGCGC.............................................................................................................................................................................................................2011.001.00--------1.00------------------------------------
.......................................................................................................................................................................................................................................GTAGCTGGAACTACAGAGATT211.000.00------------------------------------1.00--------
.......................................................................................................TGGTTTTTTTTCTTTTTTGCAG.............................................................................................................................221.000.00-1.00-------------------------------------------
.................................................................................................ATGGGTTGGTTTTTTTTCTTTTTTCTTT.............................................................................................................................281.000.00-1.00-------------------------------------------
.......................................................................................................TGGTTTTTTTTCTTTTTGGCG..............................................................................................................................211.000.001.00--------------------------------------------
......................................................................................................TTGGTTTTTTTTCTTTTTTCGGC.............................................................................................................................231.000.00-1.00-------------------------------------------
.......................................................................................................TGGTTTTTTTTCTTTTTTGGA..............................................................................................................................211.000.001.00--------------------------------------------
.......................................................................................................TGGTTTTTTTTCTTTTTTTGGCT............................................................................................................................231.000.00-1.00-------------------------------------------
......................................................................................................TTGGTTTTTTTTCTTTTTGGAG..............................................................................................................................221.000.001.00--------------------------------------------
.................................................................................................ATGGGTTGGTTTTTTTTCTTTTTTT................................................................................................................................2511.001.00-1.00-------------------------------------------
.........................................................................................................GTTTTTTTTCTTTTTTTGGGTT...........................................................................................................................221.000.00-1.00-------------------------------------------
.......................................................................................................TGGTTTTTTTTCTTTTTTTGGATT...........................................................................................................................241.000.001.00--------------------------------------------
..................................................................................................................................................................GGCACAATCTGGGGTACA......................................................................181.000.00----1.00----------------------------------------
..................................................................................................................................................................................................................................CCCGAGTAGCTGGAACTACATGA.2301.001.00--------------------1.00------------------------
................................................................................................................................AGGTTGTGCTCTGTCATCCAGGCTGG................................................................................................2620.500.50-----0.50---------------------------------------
..........................................................................................................TTTTTTTTCTTTTTTTGAGATGAGG.......................................................................................................................2580.120.12-0.12-------------------------------------------

Antisense strand
CATGGTGTATATTTTTTGTTCTTTTAGGAGAATATGAAGAAGCGCTTAAGGTAATGATTATTTAATCTCATTTTTAAATAATTTAAAAAATATTATTATGGGTTGGTTTTTTTTCTTTTTTTGAGATGAGGTTGTGCTCTGTCATCCAGGCTGGTGTGCAGTGGCACAATCTGGGGTTGCTGCAGTCTTCACCTCCCAGGCTTAAGTGATCCTCCCACCTCAGCCTCCCGAGTAGCTGGAACTACAGAAA
....................................................................................................(((..........((((.....))))..((((((((((((((((((......)))).)))).))))))))))......))).....................................................................
.................................................................................................98....................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040034(GSM532919)
G001N. (cervix)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
GSM956925PAZD5SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR038855(GSM458538)
D10. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR038854(GSM458537)
MM653. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029131(GSM416760)
MCF7. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
....................................................................................................................................................GGCTGGTGTGCAGTGGCAGGGT................................................................................ 221.000.001.00--------------------------------------------
........................................................................................................................................................................................................................ACCTCAGCCTCCCGAGTAGCTGGAACTACG.... 301.000.001.00--------------------------------------------
....................................................................................................................................................................................................................TCCCACCTCAGCCTCCCGAGTATGGA............ 261.000.00---------------------------------------1.00-----
.................................................................................................................................................................................................................................TCCCGAGTAGCTGGAATAG...... 191.000.00-----------1.00---------------------------------
...................................................................................................GGGTTGGTTTTTTTTGGTC.................................................................................................................................... 191.000.00-------------------1.00-------------------------
...............................................................................................................TTTCTTTTTTTGAGATGAGCT...................................................................................................................... 211.000.00---------1.00-----------------------------------
..................................................................................................................................................................................................................CCTCCCACCTCAGCCTCCCGATTA................ 241.000.00--------------------------------1.00------------
..........................................................................TAAATAATTTAAAAAATATAG........................................................................................................................................................... 211.000.00-------------1.00-------------------------------
................................................................................................................................................................................................................ATCCTCCCACCTCAGCCTCCCGAGTAGCTATG.......... 321.000.00-------1.00-------------------------------------
...............................................................................................................................................................................................................ACTCGGGAGGCTGAGGTGGGAGGATC................. 2601.001.00----------------------1.00----------------------
...................................................................................................................................................................................................................CTCCCACCTCAGCCTCCCGACTG................ 231.000.00-1.00-------------------------------------------
.....................................................................................................................................................................................................................CCCACCTCAGCCTCCCGAGTCAGT............. 241.000.00-1.00-------------------------------------------
......................................................................................................................................................................................................................CCACCTCAGCCTCCCGCA.................. 181.000.00----------1.00----------------------------------
..........................................................................................................................................................TGTGCAGTGGCACAAAGC.............................................................................. 181.000.00-----1.00---------------------------------------
...................................................................................................................................................AGGCTGGTGTGCAGTCGTC.................................................................................... 191.000.00------------1.00--------------------------------
............................................................................................................................................GTCATCCAGGCTGGTGTGCAGTCCT..................................................................................... 251.000.00--------------1.00------------------------------
..................................................................................................................................................................................................................CCTCCCACCTCAGCCTCCCGAGTCGGG............. 271.000.00-1.00-------------------------------------------
..............................................................................................................................................................................................................TGATCCTCCCACCTCAGCCTCCCGAAA................. 271.000.00-----------------------------------------1.00---
..........................................................................................................................................................................................................................TAGTTCCAGCTACTCGGGAGGCTGAG...... 2601.001.00---1.00-----------------------------------------
................................................................................................................................................TCCAGGCTGGTGTGCAGTCATA.................................................................................... 221.000.00-----1.00---------------------------------------
.....................................................................................................................................................................................................................CCCACCTCAGCCTCCCGAGTGGGG............. 241.000.00-------------------------------------1.00-------
....................................................................................................................................................................................................................TCCCACCTCAGCCTCCCGATTT................ 221.000.00-----------------------------1.00---------------
....................................................................................................................................................................................................................TCCCACCTCAGCCTCCCGTTTT................ 221.000.00--------------------------1.00------------------
..................................................................................................................................................................................................................CCTCCCACCTCAGCCTCCCGTTTT................ 241.000.00------------------------1.00--------------------
......................................................................................................................................CCAGCCTGGATGACAGAGCA................................................................................................ 2001.001.00---------------------1.00-----------------------
.........................................................................................................................................................................................................................CCTCAGCCTCCCGAGTAGCTGGAACTAGACG.. 311.000.00-1.00-------------------------------------------
..................................................................................................................................................................................................................CCTCCCACCTCAGCCTCCCGAGTCC............... 251.000.001.00--------------------------------------------
....................................................................................................................................................................CAACCCCAGATTGTG....................................................................... 1540.250.25--------------------------------------------0.25
................................................................................................................................................AGATTGTGCCACTGCACACCAGCCTGGA.............................................................................. 2880.120.12-0.12-------------------------------------------