ID: uc010cyg.2_intron_1_0_chr17_40612883_f.5p
GENE: (2)
chr17:40612833-40613082+


(1)
B-CELL 		(6)
BRAIN 		(5)
BREAST 		(6)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(1)
HELA 		(3)
LIVER 		(2)
OTHER 		(15)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TTCCAAAGTTATGTCATTTTCTCTTTGCTTCAGGTTGGAGAGAAATCCAGGTACTCACTAGACTGGTACCTTCTGCCACCATGGGGGAGCTTTTCCGGAGTGAAGAAATGACACTGGCCCAGCTTTTTCTACAGTCAGAGGCTGCTTATTGTTGTGTCAGTGAATTAGGAGAACTTGGAAAGGTTCAGTTTCGTGACGTAAGTAGTTGTGGGGCTGCGACTTGATTACTGCTGAACTCTATTGCTATCGT
................................................................((((.((((((.......((..(((((...((((.((.........)).))))...)))))..))......)))))).))))........................................................................................................
..................................................51...............................................................................................148....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189785SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532929(GSM532929)
G702N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR189783SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................TTTCTACAGTCAGAGGATC..........................................................................................................1917.000.006.004.00-2.00--3.00----------------1.00----------1.00-------------------
....................................................................................................................................AGTCAGAGGCTGCTTATTGTTGTGTCAGTGAATTAGGAGAACTTGGAAAGGTTCAGTTTCGT........................................................6216.006.00-----6.00------------------------------------------------
..............................................................................................................................TTCTACAGTCAGAGGATA..........................................................................................................184.000.00--------------1.00----------1.00-1.00----------1.00---------------
............................................................................................TTCCGGAGTGAAGAAATGACAC........................................................................................................................................2214.004.00----4.00-------------------------------------------------
.............................................................................................................................TTTCTACAGTCAGAGGGTC..........................................................................................................193.000.002.00-------------------------------------------1.00---------
................................................................................................................................................................TGAATTAGGAGAACTCTG........................................................................183.000.00---------1.00-------2.00------------------------------------
..............................................................................................................................TTCTACAGTCAGAGGACA..........................................................................................................183.000.002.00------------------1.00----------------------------------
..............................................................................................................................TTCTACAGTCAGAGGATG..........................................................................................................183.000.00----------1.00----------1.00------------------------1.00-------
.......................................................................................AGCTTTTCCGGAGTGAAG.................................................................................................................................................1813.003.00-------3.00----------------------------------------------
.............................................................................................................................TTTCTACAGTCAGAGTATC..........................................................................................................192.000.00-2.00----------------------------------------------------
..........................................................................................................................................................TGTCAGTGAATTAGGAGAACTTGGAAAGGTTCA...............................................................3312.002.00--2.00---------------------------------------------------
..............................................................................................................................TTCTACAGTCAGAGGATT..........................................................................................................182.000.00-------------------------------1.00----1.00-----------------
...............................................................................................................................................................GTGAATTAGGAGAACTTGGAAAGGTTC................................................................2712.002.00------------2.00-----------------------------------------
.............................................................................................................................TTTCTACAGTCAGAGGGATG.........................................................................................................202.000.00-1.00-1.00--------------------------------------------------
.......................................................................................................................................CAGAGGCTGCTTATTGTTGTG..............................................................................................2112.002.00----2.00-------------------------------------------------
...............................................................................................CGGAGTGAAGAAATGACACTGGC....................................................................................................................................2312.002.00-------------2.00----------------------------------------
......................................................................................GAGCTTTTCCGGAGTGAAG.................................................................................................................................................1912.002.00-----------2.00------------------------------------------
.............................................................................................................................TTTCTACAGTCAGAGGATT..........................................................................................................192.000.001.001.00----------------------------------------------------
..............................................................................................................................TTCTACAGTCAGAGGACT..........................................................................................................182.000.001.00--------------------------------1.00--------------------
.............................................................................ACCATGGGGGAGCTTTTCCGG........................................................................................................................................................2111.001.00----------1.00-------------------------------------------
........................................................ACTAGACTGGTACCTTCTGC..............................................................................................................................................................................2011.001.00--------------------------1.00---------------------------
.................................................................................................................................................TTATTGTTGTGTCAGTGAATTAGGAG...............................................................................2611.001.00--1.00---------------------------------------------------
................................................................................................................................................................TGAATTAGGAGAACTTGGA.......................................................................1911.001.00------------------------------------------------1.00-----
..............................................................................................................................TTCTACAGTCAGAGGCTG..........................................................................................................1811.001.00---1.00--------------------------------------------------
.....................................................................................................................................................................................GGTTCAGTTTCGTGACTTAA.................................................201.000.00-------------------------------------1.00----------------
.............................................................................................................................................................................................................................TGATTACTGCTGAACTCTATAG.......221.000.00---------------------------------------1.00--------------
........................................................ACTAGACTGGTACCTTCTGCCACC..........................................................................................................................................................................2411.001.00----------------------1.00-------------------------------
.............................................................................................................................................CTGCTTATTGTTGTGTCAGTGAATTAGGAGAAC............................................................................3311.001.00-------------------------------------------------1.00----
.............................................................................................................................TTTCTACAGTCAGAGGATTG.........................................................................................................201.000.00-1.00----------------------------------------------------
..............................................................CTGGTACCTTCTGCCCGA..........................................................................................................................................................................181.000.00------1.00-----------------------------------------------
.............................................................................................................................TTTCTACAGTCAGAGGATCT.........................................................................................................201.000.00-1.00----------------------------------------------------
......................................................................TTCTGCCACCATGGGGGAGC................................................................................................................................................................2011.001.00--------1.00---------------------------------------------
..............................................................................................................................TTCTACAGTCAGAGGGGTT.........................................................................................................191.000.001.00-----------------------------------------------------
.............................................................................................................................TTTCTACAGTCAGAGGATA..........................................................................................................191.000.00-1.00----------------------------------------------------
...................................TGGAGAGAAATCCAGTTC.....................................................................................................................................................................................................181.000.00-1.00----------------------------------------------------
.............................................................................................................................TTTCTACAGTCAGAGGAT...........................................................................................................181.000.00---1.00--------------------------------------------------
............................................................................................................................................................TCAGTGAATTAGGAGAACTTGGAAAGGTT.................................................................2911.001.00------------------1.00-----------------------------------
.................................................................................................................................................TTATTGTTGTGTCAGTGAATTAGGAGAACTTGG........................................................................3311.001.00--1.00---------------------------------------------------
.........................TGCTTCAGGTTGGAGAGAAATCCAG........................................................................................................................................................................................................2511.001.00---------------1.00--------------------------------------
..............................................................................CCATGGGGGAGCTTTTC...........................................................................................................................................................1711.001.00--------------------1.00---------------------------------
.................................................................GTACCTTCTGCCACCATGGGGGAGCTTTTCCGG........................................................................................................................................................3311.001.00--------1.00---------------------------------------------
...............................................................................................................................TCTACAGTCAGAGGCTC..........................................................................................................171.000.00---------------------------------------------1.00--------
......................................................................................................................................................GTTGTGTCAGTGAATTAGGAGAACTTGGAAAGGT..................................................................3411.001.00--1.00---------------------------------------------------
.................................................................................................................................TACAGTCAGAGGCTGCTTATTGTTGTGTC............................................................................................2911.001.00--1.00---------------------------------------------------
..................................................................................................................................................................AATTAGGAGAACTTGGAAAGGA..................................................................221.000.00-----------------------------------1.00------------------
.........................................................CTAGACTGGTACCTTCTGCC.............................................................................................................................................................................2011.001.00---------1.00--------------------------------------------
.............................................................................................................................TTTCTACAGTCAGAGGAGT..........................................................................................................191.000.001.00-----------------------------------------------------
...............................................................................................................................................................GTGAATTAGGAGAACTTGGAAAGGT..................................................................2511.001.00---------------1.00--------------------------------------
..............................................................................................................................................................AGTGAATTAGGAGAACTTGGAAAGGT..................................................................2611.001.00------------------------1.00-----------------------------
........................................................................................GCTTTTCCGGAGTGAAGA................................................................................................................................................1811.001.00------------------------------1.00-----------------------
.............................................................................................................................TTTCTACAGTCAGAGGACA..........................................................................................................191.000.001.00-----------------------------------------------------
..............................................................................................................................TTCTACAGTCAGAGGCATA.........................................................................................................191.000.00---1.00--------------------------------------------------
........................................................................................................................................................TGTGTCAGTGAATTAGGAGAACTTGGAAAGG...................................................................3111.001.00----------------1.00-------------------------------------
.............................................................................................................................TTTCTACAGTCAGAGGATAT.........................................................................................................201.000.00-1.00----------------------------------------------------
............................................................................................................................................................................................................GTTGTGGGGCTGCGACTGCT..........................201.000.00-----------------------------1.00------------------------
.............................................................................................................................TTTCTACAGTCAGAGACTC..........................................................................................................191.000.001.00-----------------------------------------------------
...................................................................................................................................................................ATTAGGAGAACTTGGAAAGGTTCA...............................................................2411.001.00----------------------------------------1.00-------------
.............................................................................................................................TTTCTACAGTCAGAGAATC..........................................................................................................191.000.001.00-----------------------------------------------------
............................................................................................................................TTTTCTACAGTCAGATGGT...........................................................................................................191.000.00-1.00----------------------------------------------------
....................................................................................................................................AGTCAGAGGCTGCTTATTGTTGTG..............................................................................................2411.001.00-----------------------------------------1.00------------
............................................ATCCAGGTACTCACTAGACT..........................................................................................................................................................................................2011.001.00--------1.00---------------------------------------------
..............................................................................................CCGGAGTGAAGAAATGACACTGGCC...................................................................................................................................2511.001.00--------------------------------1.00---------------------
................................................AGGTACTCACTAGACTGG........................................................................................................................................................................................1811.001.00----------------------------1.00-------------------------
.............................................................................................TCCGGAGTGAAGAAATGAC..........................................................................................................................................1911.001.00------------------------------------------1.00-----------
................................................................................................................ACTGGCCCAGCTTTTTCT........................................................................................................................1811.001.00----------------1.00-------------------------------------
...................................................................ACCTTCTGCCACCATGGG.....................................................................................................................................................................1820.500.50--------------------------------------------------0.50---
........................................................................................................................................................................GAGAACTTGGAAAGGT..................................................................1670.430.43------------------0.43-----------------------------------
.....................................................................................................................................GTCAGAGGCTGCTTA......................................................................................................1540.250.25---------------------------------------------------0.25--
......................................................................................................................................................................AGGAGAACTTGGAAAG....................................................................1690.110.11-----------------------------------------------------0.11

Antisense strand
TTCCAAAGTTATGTCATTTTCTCTTTGCTTCAGGTTGGAGAGAAATCCAGGTACTCACTAGACTGGTACCTTCTGCCACCATGGGGGAGCTTTTCCGGAGTGAAGAAATGACACTGGCCCAGCTTTTTCTACAGTCAGAGGCTGCTTATTGTTGTGTCAGTGAATTAGGAGAACTTGGAAAGGTTCAGTTTCGTGACGTAAGTAGTTGTGGGGCTGCGACTTGATTACTGCTGAACTCTATTGCTATCGT
................................................................((((.((((((.......((..(((((...((((.((.........)).))))...)))))..))......)))))).))))........................................................................................................
..................................................51...............................................................................................148....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189785SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532929(GSM532929)
G702N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR189783SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................................................................................TTTTTCTACAGTCAGCTG............................................................................................................. 181.000.00-------------------------------------------1.00----------
.....................................................................................GGAGCTTTTCCGGAGT..................................................................................................................................................... 161.000.00-----------------------------------------------1.00------
......................................................................................................................................TCAGAGGCTGCTTATTATG................................................................................................. 191.000.00--------------1.00---------------------------------------
......................................................................................................................GCCTCTGACTGTAGAAAAAGCTGG............................................................................................................ 2411.001.00--1.00---------------------------------------------------
..........................TCTCTCCAACCTGAAGC............................................................................................................................................................................................................... 1720.500.50---------0.50--------------------------------------------
..........................TCTCCAACCTGAAGC................................................................................................................................................................................................................. 1570.140.14----------------------------------------------------0.14-