ID: uc010ckn.1_intron_2_0_chr17_3832075_r.5p
GENE: (2)
chr17:3832422-3832671-


(2)
AGO2.ip
(3)
B-CELL
(3)
BREAST
(18)
CELL-LINE
(1)
CERVIX
(1)
HEART
(4)
LIVER
(1)
OTHER
(4)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
CCATGTCCATGGCCCTGCACTTCCTCATCCTGCTCGTGCCGCCCCTGCCTGTGAGTCACCCCGCCTGCCCCACTGCCCTGGTCCCTGGACATCACAGGCCCTGGGCTGGTCACTGGACCTCTCTGGCCCCCCTGCAATGGAAACTACCTGGAGGAGAGGGAGGTGAGAGGTCTGGCCAGCCACCACCTCCAGCTGTGGCCCCACCTTCAGGAGCTCCCAGACCTGGGGGACGGAAGAGGGGGAAACCCCT
................................................................................................((((..(((((..(((((...(((((((.((......))...((......))....)))))))..)))))..))))))))).........................................................................
...............................................................................................96...............................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038854(GSM458537)
MM653. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR038862(GSM458545)
MM472. (cell line)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR029125(GSM416754)
U2OS. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785
..........................................................................................................................................................AGAGGGAGGTGAGAGACGG.............................................................................1924.000.008.001.002.004.00-2.00-------1.00-1.001.00---------1.00--1.00-1.001.00-------
..........................................................................................................................................................AGAGGGAGGTGAGAGACG..............................................................................1820.000.001.003.002.00--1.003.00----1.00-------1.00---1.00-1.00--1.00-1.00--1.001.001.001.00---
.........................................................................................................................................................GAGAGGGAGGTGAGAGAAT..............................................................................192.000.00-------2.00--------------------------------
........ATGGCCCTGCACTTCCTCA...............................................................................................................................................................................................................................1912.002.00--------2.00-------------------------------
.......................................................................................................................................................AGGAGAGGGAGGTGAGAGGT...............................................................................2011.001.00----1.00-----------------------------------
.............................................................................................................................................................................................................TTCAGGAGCTCCCAGACTCG.........................201.000.00---------------------1.00------------------
.................................................................................................................................................................GGTGAGAGGTCTGGCAG........................................................................171.000.00--------------------1.00-------------------
..ATGTCCATGGCCCTGCACTTCCTCATCC............................................................................................................................................................................................................................2811.001.00---------1.00------------------------------
....................................................................................................CTGGGCTGGTCACTGGAG....................................................................................................................................181.000.00--------------1.00-------------------------
....................................................................................................................................................TGGAGGAGAGGGAGGTGAGAG.................................................................................2111.001.00------------------------1.00---------------
....GTCCATGGCCCTGCACTTCCTCATCC............................................................................................................................................................................................................................2611.001.00------------1.00---------------------------
..........................................................................................................................................................AGAGGGAGGTGAGAGACT..............................................................................181.000.00------------------1.00---------------------
.................................................................................................................................................................................................TGTGGCCCCACCTTCAG........................................1730.330.33-------------------------------------0.33--

Antisense strand
CCATGTCCATGGCCCTGCACTTCCTCATCCTGCTCGTGCCGCCCCTGCCTGTGAGTCACCCCGCCTGCCCCACTGCCCTGGTCCCTGGACATCACAGGCCCTGGGCTGGTCACTGGACCTCTCTGGCCCCCCTGCAATGGAAACTACCTGGAGGAGAGGGAGGTGAGAGGTCTGGCCAGCCACCACCTCCAGCTGTGGCCCCACCTTCAGGAGCTCCCAGACCTGGGGGACGGAAGAGGGGGAAACCCCT
................................................................................................((((..(((((..(((((...(((((((.((......))...((......))....)))))))..)))))..))))))))).........................................................................
...............................................................................................96...............................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038854(GSM458537)
MM653. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR038862(GSM458545)
MM472. (cell line)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR029125(GSM416754)
U2OS. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785
..........................................................................................................................................................................TCTGGCCAGCCACCACCAA............................................................. 191.000.00----1.00-----------------------------------
...................................................................................................................................................................................................................................GGACGGAAGAGGGGGTCCC.... 191.000.00-----------------1.00----------------------
..........................................................................................................................................................................TCTGGCCAGCCACCACAA.............................................................. 181.000.00----1.00-----------------------------------
.......................................................................................................................................................AGGAGAGGGAGGTGAGAGAG............................................................................... 201.000.00----------1.00-----------------------------
...........................................................................................................................................................................CTGGCCAGCCACCACCTCAA........................................................... 201.000.00----------------------1.00-----------------
.......................................................................................................................TCTCTGGCCCCCCTGCG.................................................................................................................. 171.000.00---------------------------1.00------------
....................................................................................................................................................................................................................CCCCAGGTCTGGGAGC...................... 1650.200.20--------------------------------------0.20-
..........................................................................................................................TTGCAGGGGGGCCAG................................................................................................................. 1560.170.17---------------------------------------0.17