ID: uc010cjf.2_intron_5_0_chr16_90141432_r.3p
GENE: (1)
chr16:90141382-90141631-


(1)
AGO2.ip 		(1)
B-CELL 		(12)
BREAST 		(5)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HELA 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(1)
SKIN 		(4)
UTERUS

Sense strand
GGGAAATATTGTTCTTTTGCGTCAGTGCAGGGTTGTGTGTGGATACTGACCATGCAGAGGTCACATCTTGACCTTGTTCAAGACTCTCCCAGCTCATCAGACTGAGCAGCACTGGCTTTGTGGTGCTTTCCATTGCCACTGCCCTTTGTTCCTCATCCCAGCTCTTCCGTTTCAGAGCAAAATTTTTTGCTTCTTTTCAGGTCTCAGAGCCACTCGACCAGCTTTCATGTGTCACCGAAGGCAGGCCATC
...........................................................................................(((((......))))).(((.((((...((((......)))).)))).)))............................................................................................................
....................................................................................85...............................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM532880(GSM532880)
G659T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
.........................................................................................CAGCTCATCAGACTGATGTT.............................................................................................................................................2013.000.004.002.001.001.001.00--1.001.00----1.00--------------1.00----
..........................................................................................AGCTCATCAGACTGATGTT.............................................................................................................................................1912.000.002.002.002.00-----------1.00--1.00--1.001.00----1.001.00-----
..........................................................................................AGCTCATCAGACTGATGT..............................................................................................................................................187.000.001.001.001.002.00--------1.00-----1.00--------------
.........................................................................................CAGCTCATCAGACTGATGT..............................................................................................................................................194.000.001.00---1.00---1.00---------------1.00--------
.........................................................................................CAGCTCATCAGACTGATGCT.............................................................................................................................................202.000.001.00-1.00------------------------------
.........................................................................................CAGCTCATCAGACTGACGTT.............................................................................................................................................201.000.00----------------1.00----------------
..........................................................................................AGCTCATCAGACTGAGGTTG............................................................................................................................................201.000.00------------------------------1.00--
.........................................................................................CAGCTCATCAGACTGATTTT.............................................................................................................................................201.000.00------1.00--------------------------
.........................................................................................CAGCTCATCAGACTGAGGTGG............................................................................................................................................211.000.00-----------------------------1.00---
.........................................................................................CAGCTCATCAGACTGAGGTTG............................................................................................................................................211.000.00-----1.00---------------------------
.........................................................................................CAGCTCATCAGACTGACGAC.............................................................................................................................................201.000.00-------------------1.00-------------
................................................................................................................................................................GCTCTTCCGTTTCAGG..........................................................................161.000.00-----------------------1.00---------
..........................................................................................AGCTCATCAGACTGAGGTGG............................................................................................................................................201.000.00----1.00----------------------------
.................................................................................................................................CCATTGCCACTGCCCGC........................................................................................................171.000.00-------------------------------1.00-
..........................................................................................................CAGCACTGGCTTTGTGGGA.............................................................................................................................191.000.00-------------------------1.00-------
.........................................................................................CAGCTCATCAGACTGAGG...............................................................................................................................................181.000.00---------1.00-----------------------
.........................................................................................CAGCTCATCAGACTGACGT..............................................................................................................................................191.000.00-----1.00---------------------------
..........................................................................................AGCTCATCAGACTGAGGTT.............................................................................................................................................191.000.00------1.00--------------------------
.........................................................................................................GCAGCACTGGCTTTGACGC..............................................................................................................................191.000.00----------------------1.00----------
.........................................................................................CAGCTCATCAGACTGATGTC.............................................................................................................................................201.000.00-1.00-------------------------------
.........................................................................................CAGCTCATCAGACTGAGACCG............................................................................................................................................211.000.00-------1.00-------------------------
.........................................................................................CAGCTCATCAGACTGACG...............................................................................................................................................181.000.00-----------1.00---------------------
.........................................................................................CAGCTCATCAGACTG..................................................................................................................................................1580.120.12--------------------------------0.12
.........................................................................................CAGCTCATCAGACTGCTGT..............................................................................................................................................1980.120.12----0.12----------------------------

Antisense strand
GGGAAATATTGTTCTTTTGCGTCAGTGCAGGGTTGTGTGTGGATACTGACCATGCAGAGGTCACATCTTGACCTTGTTCAAGACTCTCCCAGCTCATCAGACTGAGCAGCACTGGCTTTGTGGTGCTTTCCATTGCCACTGCCCTTTGTTCCTCATCCCAGCTCTTCCGTTTCAGAGCAAAATTTTTTGCTTCTTTTCAGGTCTCAGAGCCACTCGACCAGCTTTCATGTGTCACCGAAGGCAGGCCATC
...........................................................................................(((((......))))).(((.((((...((((......)))).)))).)))............................................................................................................
....................................................................................85...............................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM532880(GSM532880)
G659T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
.......................................................................................................................................................CTCATCCCAGCTCTTCAGCG............................................................................... 201.000.00---------------1.00-----------------
.......................................................................................................................................................CTCATCCCAGCTCTTAAGG................................................................................ 191.000.00---1.00-----------------------------
............................................................................................................................................................................................................CAGAGCCACTCGACCAC............................. 171.000.00----------1.00----------------------