ID: uc010cja.1_intron_2_0_chr16_89999088_f.3p
GENE: (3)
chr16:89999676-89999925+


(2)
AGO1.ip 		(1)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(9)
BRAIN 		(1)
BREAST 		(23)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(6)
HELA 		(2)
OTHER 		(4)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTGCTCCGTCCTTAAACACAGTGAGGCTTAAGGGTGAAGAAAGTTGCTGAAGCTTGCCTTTGGTCCAGGACTCTGACTTCAGAGTACAGGCTCTTAGGATGTGAGCAGGAGGATGGCAGGCGGGCACAGAATTCAGAAAGAATGAGGGAGAGGCTCTGGCCCTCTGTGACCCGAATCACCGAGCCCCTCTCTCCCCTCAGCTCACAAGTACGTGCCTCGAGCCATTCTGGTGGACCTGGAACCCGGAACC
..........................................................................................(((((...........))))).......((.((((.((((.(((...............)))..)))))))).)).....................................................................................
..........................................................................................91........................................................................165...................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
............................................................................................................................................AATGAGGGAGAGGCTCTGGCC.........................................................................................21111.0011.00-4.00--1.001.00-------1.00----------1.00-----1.00--------1.00--------1.00---
............................................................................................................................................AATGAGGGAGAGGCTCTGGCCCT.......................................................................................2317.007.00--5.00-----1.00-----1.00-------------------------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGG...........................................................................................1915.005.001.001.00-1.00-1.00----------------1.00-----------------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGGCA.........................................................................................2114.001.00------2.00-------------------------1.00--------1.00----------
.............................................................................................................................................ATGAGGGAGAGGCTCTGGCCCT.......................................................................................2214.004.001.00-2.00----------1.00--------------------------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGGCAA........................................................................................2213.001.00----2.001.00----------------------------------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGGCCAAAG.....................................................................................2513.0011.00---3.00------------------------------------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGTAA.........................................................................................212.000.002.00---------------------------------------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGGCCC........................................................................................2212.002.00---------1.00------------------------------------1.00-----
............................................................................................................................................AATGAGGGAGAGGCTCTGGA..........................................................................................2012.005.00---1.00-1.00----------------------------------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGGAAA........................................................................................2212.005.00----2.00-----------------------------------------------
.............................................................................................................................................ATGAGGGAGAGGCTCTGGC..........................................................................................1912.002.001.00-------------1.00-------------------------------------
................CACAGTGAGGCTTAACAC........................................................................................................................................................................................................................182.000.00------------------1.00---------------------1.00-----------
............................................................................................................................................AATGAGGGAGAGGCTCTGGCCCAT......................................................................................2412.002.00-------1.00-------------1.00------------------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGGCCCTTT.....................................................................................2511.007.00-------1.00--------------------------------------------
................................................................................................................................................................................................................................TTCTGGTGGACCTGGAACCCGGAA..2411.001.00--------1.00-------------------------------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGGCCCA.......................................................................................2311.002.00---------1.00------------------------------------------
..................................................................................................................................................................................................................CGTGCCTCGAGCCATTCTGGTGGACCTGGAACC.......3311.001.00-----------1.00----------------------------------------
............................................................................................................................................AATGAGGGAGAGGCTCCGG...........................................................................................191.000.00---------------------------------1.00------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGGCAAAA......................................................................................2411.001.00----------1.00-----------------------------------------
.............................................................................................................................................ATGAGGGAGAGGCTCTGGCC.........................................................................................2011.001.00---------1.00------------------------------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGGCCCTT......................................................................................2411.007.00---1.00------------------------------------------------
.............................................................................................................................................ATGAGGGAGAGGCTCTGGCCCTT......................................................................................2311.004.00-------1.00--------------------------------------------
.......................................................................................AGGCTCTTAGGATGTGAGCAGGAGGATGGCAGGCGGGCACAGAATTCAGAAAGA.............................................................................................................5411.001.00--------------------------------------------1.00-------
..................................................................................................................................................................................................................................CTGGTGGACCTGGAACCCGGAA..2211.001.00-------------------------1.00--------------------------
...............................................................................................................................................................................................................................ATTCTGGTGGACCTGGAACC.......2011.001.00----------1.00-----------------------------------------
................CACAGTGAGGCTTAAAAA........................................................................................................................................................................................................................181.000.00----------------------------1.00-----------------------
..................................................................................................................................................................................................................................CTGGTGGACCTGGAACCCGGAACC2411.001.00-----------1.00----------------------------------------
................................................................................................................................................................................................................TACGTGCCTCGAGCCATT........................1811.001.00-------------------1.00--------------------------------
...........................................................................................................................................................................................................ACAAGTACGTGCCTCGAG.............................1811.001.00--------------------------------------1.00-------------
.........................................................................................................................................................................................................................CGAGCCATTCTGGTGGACCTGGAACCCGGAAC.3211.001.001.00---------------------------------------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGGCCCACTT....................................................................................2611.002.00-----------------------1.00----------------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGGC..........................................................................................2011.001.00---------------1.00------------------------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGGGC.........................................................................................2111.005.00-1.00--------------------------------------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGGCCCATT.....................................................................................2511.002.00-----------------------------------1.00----------------
.............................................................................................................................................ATGAGGGAGAGGCTCTGGCCC........................................................................................2111.001.00-----------------1.00----------------------------------
.....................TGAGGCTTAAGGGTGGAT...................................................................................................................................................................................................................181.000.00------1.00---------------------------------------------
.........................................................................................................................................................................................................................CGAGCCATTCTGGTGGA................1711.001.00-------------------------------------------1.00--------
............................................................................................................................................AATGAGGGAGAGGCTCTGGCCCTTAAA...................................................................................2711.007.00--------------------1.00-------------------------------
.............................................................................................................................................ATGAGGGAGAGGCTCTGGCCCTAT.....................................................................................2411.004.00--------1.00-------------------------------------------
...............................................................................................AGGATGTGAGCAGGAGGA.........................................................................................................................................1811.001.00------------1.00---------------------------------------
.............................................................................................................................................ATGAGGGAGAGGCTCTGGCCCTTT.....................................................................................2411.004.00------------------------------------1.00---------------
...............................................................................................................................................GAGGGAGAGGCTCTG............................................................................................1501.001.00---------------------------1.00------------------------
...............................................................................................................................................................................................................................ATTCTGGTGGACCTGGAACCCGGAA..2511.001.00-----------------------------1.00----------------------
............................................................................................................................................AATGAGGGAGAGGCTCTGGCCGAT......................................................................................2411.0011.00---------------------------------------------1.00------
............................................................................................................................................AATGAGGGAGAGGCTCTGA...........................................................................................191.000.00----------1.00-----------------------------------------
..............................................................................................................................................................................................................................CATTCTGGTGGACCTGGAACCCGGAA..2611.001.00-----------------------------------------------1.00----
.............................................................................................................................................................................AATCACCGAGCCCCTCTCTCCC.......................................................2211.001.00----------------1.00-----------------------------------
............................................................................................................................................AATGAGGGAGAGGCTCTTT...........................................................................................191.000.00-1.00--------------------------------------------------
.............................................................................................................................................ATGAGGGAGAGGCTCTGGCCCTAA.....................................................................................2411.004.00------------------------------------------1.00---------
...........................................................................................TCTTAGGATGTGAGCAGGAGGATGGC.....................................................................................................................................2611.001.00-------------------------------------1.00--------------
............................................................................................................................................AATGAGGGAGAGGCTCTGGCCCAAT.....................................................................................2511.002.00------------1.00---------------------------------------
.............................................................................................................................................ATGAGGGAGAGGCTCTGGCA.........................................................................................2011.002.00----1.00-----------------------------------------------
..................................................................................................................................................................................................................................CTGGTGGACCTGGAACCCG.....1920.500.50-----------0.50----------------------------------------
..............................................................................................................................................TGAGGGAGAGGCTCTGGCCC........................................................................................2020.500.50------------0.50---------------------------------------
..............................................................................................................................................TGAGGGAGAGGCTCTGGCC.........................................................................................1920.500.50-------------------------------------------------0.50--
...................................................................................................................................................................................................................................TGGTGGACCTGGAAC........1590.330.330.11-------------------------------------------------0.110.11
....................................................................................................................................................................................................................................GGTGGACCTGGAACCCGG....1830.330.330.33---------------------------------------------------
....................................................................................................................................................................................................................................GGTGGACCTGGAACCCG.....1730.330.33---------------0.33------------------------------------

Antisense strand
CTGCTCCGTCCTTAAACACAGTGAGGCTTAAGGGTGAAGAAAGTTGCTGAAGCTTGCCTTTGGTCCAGGACTCTGACTTCAGAGTACAGGCTCTTAGGATGTGAGCAGGAGGATGGCAGGCGGGCACAGAATTCAGAAAGAATGAGGGAGAGGCTCTGGCCCTCTGTGACCCGAATCACCGAGCCCCTCTCTCCCCTCAGCTCACAAGTACGTGCCTCGAGCCATTCTGGTGGACCTGGAACCCGGAACC
..........................................................................................(((((...........))))).......((.((((.((((.(((...............)))..)))))))).)).....................................................................................
..........................................................................................91........................................................................165...................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
............................................................................................................................................................................GAATCACCGAGCCCCTC............................................................. 171.000.001.00---------------------------------------------------
...............................................................................................................................................................................TCACCGAGCCCCTCTCAA......................................................... 181.000.00----------------------------------1.00-----------------
...............................................................................................................................................................................TCACCGAGCCCCTCTCAATA....................................................... 201.000.00--------------------------1.00-------------------------
...............................................................................................................................................................................TCACCGAGCCCCTCTAATA........................................................ 191.000.00-------------------------------1.00--------------------