ID: uc010cgi.1_intron_0_0_chr16_71949632_f.3p
GENE: (1)
chr16:71956177-71956426+


(4)
B-CELL
(3)
BREAST
(8)
CELL-LINE
(2)
CERVIX
(3)
HEART
(1)
HELA
(1)
OTHER
(49)
SKIN
(1)
TESTES

Sense strand
TTGGCTGAGGCCTTTGTTGTGACTGTGTTGCAGCCCAACTTCTCCTTCCACCTAACTCTGCCTTTTCTTCCCCCACAGGTGTTGATCCCAGAAGCACTCCAGTAAACTTGCTTTATGCTAATCTCCATCTCAGACTCCGCTTTCTGGGGAACCTGGCCTTGGACATGGGTTAATGACCTGGGTTTCTCTTTTTTTCTCAGGCAGAAGCTCCTCCTGGGGTAGAGACAGATCTTATTGATGTTGGATTCAC
...............................................................................................................................................((((((((...(((((.((.(((......))).)).)))))........))))))))..................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191428(GSM715538)
160genomic small RNA (size selected RNA from . (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR343335SRR189786SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR343334SRR040022(GSM532907)
G575N. (cervix)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
................................................................................................................................................TGGGGAACCTGGCCTAAAC.......................................................................................19128.000.00--13.008.007.005.006.006.005.004.00-4.003.003.002.003.00-3.003.001.003.003.003.003.003.003.001.002.002.002.001.002.001.002.002.001.002.002.00-1.001.00-1.001.001.00--1.001.001.00---1.001.001.00-------1.00--1.001.00---------
...............................................................................................................................................................TGGACATGGGTTAATC...........................................................................1613.000.00-13.00---------------------------------------------------------------------------
....................................................................................................................................................................................................TCAGGCAGAAGCTCCTCCCG..................................2018.001.008.00----------------------------------------------------------------------------
....................................................................................................................................................................................................TCAGGCAGAAGCTCCTATAG..................................207.000.007.00----------------------------------------------------------------------------
....................................................................................................................................................................................................TCAGGCAGAAGCTCCTACAG..................................205.000.004.00---------------1.00------------------------------------------------------------
..............................................................................................................................................TCTGGGGAACCTGGCGC...........................................................................................175.000.00--------------1.00----1.00----------1.00-1.00-----1.00--------------------------------------
....................................................................................................................................................................................................TCAGGCAGAAGCTCCTACCG..................................204.000.004.00----------------------------------------------------------------------------
....................................................................................................................................................................................................TCAGGCAGAAGCTCCTCCAG..................................2013.001.003.00----------------------------------------------------------------------------
....................................................................................................................................................................................................TCAGGCAGAAGCTCCTCCCGTT................................2212.001.002.00----------------------------------------------------------------------------
..............................................................................................................................................TCTGGGGAACCTGGCCTAAAC.......................................................................................212.000.00-----2.00-----------------------------------------------------------------------
....................................................................................................................................................................................................TCAGGCAGAAGCTCCTCTCG..................................202.000.002.00----------------------------------------------------------------------------
.............................................................................................................................................TTCTGGGGAACCTGGCGC...........................................................................................1851.600.60------0.20------0.200.20-----------------------0.40--------------------------------0.60-----
.............................................................................................................................................................CTTGGACATGGGTTA..............................................................................1531.331.330.33-------------------------------------------------------------------0.67----0.33---
...........................................................................................................................................CTTTCTGGGGAACCTGGC.............................................................................................1811.001.00---------1.00-------------------------------------------------------------------
...................................................................................................................................................................................GGGTTTCTCTTTTTTGG......................................................171.000.00----------------1.00------------------------------------------------------------
..............................................................................................................................................................TTGGACATGGGTTAATG...........................................................................1711.001.00---------------------------------------------1.00-------------------------------
................................................................................................................................................TGGGGAACCTGGCCTAAC........................................................................................181.000.00-------------------1.00---------------------------------------------------------
....................................................................................................................................................................................................TCAGGCAGAAGCTCCTCC....................................1811.001.001.00----------------------------------------------------------------------------
...................................................................................................................................................................................................................TCCTGGGGTAGAGACAGAT....................1911.001.00--------------------------------------------------------1.00--------------------
............................................................................................................................................................................ATGACCTGGGTTTCTCTTTTTTTTC.....................................................251.000.00----------------------------------------------1.00------------------------------
.............................................................................................................................................................................................................AGCTCCTCCTGGGGTAGAGACAGAAC...................261.000.00----------1.00------------------------------------------------------------------
..............................................................................................................................................TCTGGGGAACCTGGCG............................................................................................161.000.00-----------------------------------1.00-----------------------------------------
...............................................................................................................................................................................................................CTCCTCCTGGGGTAGAGACAG......................2111.001.00------------------------------------------------------------1.00----------------
................................................................................................................................................................................................................TCCTCCTGGGGTAGAGACAGATCTTATTGA............3011.001.00---------------------------------------------------1.00-------------------------
.........................................................CTGCCTTTTCTTCCCCCGCT.............................................................................................................................................................................201.000.00----------------------------------------------------------1.00------------------
....................................................................................................................................................................................................TCAGGCAGAAGCTCCTATCG..................................201.000.001.00----------------------------------------------------------------------------
................................................................................GTTGATCCCAGAAGCACTCCA.....................................................................................................................................................2111.001.00---------------------------------------------------------1.00-------------------
.............................................................................................................................................................................................................AGCTCCTCCTGGGGTAGAGACAGACCT..................271.000.00----------1.00------------------------------------------------------------------
...............................................................................................................................................................TGGACATGGGTTAATCTAT........................................................................191.000.00----------------1.00------------------------------------------------------------
......................................................................................................................................CTCCGCTTTCTGGGGAACCTGG..............................................................................................2211.001.00----------------------------------------------------1.00------------------------
............................................................................................................................................................................................................AAGCTCCTCCTGGGGTAGAGACAGATCC..................281.000.00----------1.00------------------------------------------------------------------
....................................................................................................................................................................................................TCAGGCAGAAGCTCCTCCCGTC................................2211.001.001.00----------------------------------------------------------------------------
................................................................................................................................................................................................................................ACAGATCTTATTGATGTTGGA.....2121.001.00--------------------------1.00--------------------------------------------------
....................................................................................................................................................................................................................CCTGGGGTAGAGACAGATCTT.................2111.001.00--------------------------------------------------------------1.00--------------
................................................................................................................................................TGGGGAACCTGGCCTAAA........................................................................................181.000.00---1.00-------------------------------------------------------------------------
...................................................................................GATCCCAGAAGCACTCCAGTAAACTTGCTTTATGCTAATCTCCATCTCAGACTCCGCTTT...........................................................................................................6011.001.00-----------------------------------------1.00-----------------------------------
....................................................................................................................................................GAACCTGGCCTTGGACATGGGTTAATGACCTGG.....................................................................3311.001.00--------------------------------------------------1.00--------------------------
...............................................................................................................................................................................ACCTGGGTTTCTCTTTTTTTTTC....................................................231.000.00----------1.00------------------------------------------------------------------
....................................................................................................................................................................................................TCAGGCAGAAGCTCCTATCA..................................201.000.001.00----------------------------------------------------------------------------
.............................................................................................................................................................CTTGGACATGGGTTAGT............................................................................1730.671.33---------------------------------------------------------------------0.67-------
.............................................................................................................................................................CTTGGACATGGGTTAGTCG..........................................................................1930.671.33----------------------------------------------------------------------0.67------
.............................................................................................................................................TTCTGGGGAACCTGGC.............................................................................................1650.600.60-------------0.20-------------0.20-----------0.20-------------------------------------
...................................................................................................................................................................................................................................GATCTTATTGATGTTGGATTCAC2320.500.50------------0.50----------------------------------------------------------------
..................................................................................................................................................................................................................................AGATCTTATTGATGTTGGATTC..2220.500.50-----------------------------------------------------------0.50-----------------
.....................................................................................................................................................................................................................CTGGGGTAGAGACAGATCT..................1920.500.50-----------------------------------------------------------0.50-----------------
.....................................................................................................................................................................................................................CTGGGGTAGAGACAGATC...................1820.500.50------------------------------------------------------------------------0.50----
.............................................................................................................................................................CTTGGACATGGGTTAGTC...........................................................................1830.331.33--------------------------------------------------------------------------0.33--
.............................................................................................................................................TTCTGGGGAACCTGGCG............................................................................................1750.200.60-----------------------------0.20-----------------------------------------------
................TTGTGACTGTGTTGCA..........................................................................................................................................................................................................................1650.200.20----------------------------0.20------------------------------------------------
.............................................................................................................................................TTCTGGGGAACCTGGCGCTA.........................................................................................2050.200.60--------0.20--------------------------------------------------------------------
.......................................................................................................................................................................................................................................TTATTGATGTTGGATT...1660.170.17----------------------------------------0.17------------------------------------

Antisense strand
TTGGCTGAGGCCTTTGTTGTGACTGTGTTGCAGCCCAACTTCTCCTTCCACCTAACTCTGCCTTTTCTTCCCCCACAGGTGTTGATCCCAGAAGCACTCCAGTAAACTTGCTTTATGCTAATCTCCATCTCAGACTCCGCTTTCTGGGGAACCTGGCCTTGGACATGGGTTAATGACCTGGGTTTCTCTTTTTTTCTCAGGCAGAAGCTCCTCCTGGGGTAGAGACAGATCTTATTGATGTTGGATTCAC
...............................................................................................................................................((((((((...(((((.((.(((......))).)).)))))........))))))))..................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191428(GSM715538)
160genomic small RNA (size selected RNA from . (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR343335SRR189786SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR343334SRR040022(GSM532907)
G575N. (cervix)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
................................................................................................................................CTCAGACTCCGCTTTGCAT....................................................................................................... 191.000.00-------------------------------------------------------------1.00---------------
..............................................................................................................................................................................................................TCTACCCCAGGAGGAGC........................... 1741.001.00--------------------------0.50------------------------------------------------0.250.25
..GGCTGAGGCCTTTGTTGTCTC................................................................................................................................................................................................................................... 211.000.001.00----------------------------------------------------------------------------
...................................CAACTTCTCCTTCCATAA..................................................................................................................................................................................................... 181.000.00----------------------------------------------------------------1.00------------
...............................................................................................................................................CTGGGGAACCTGGCCCAAT........................................................................................ 191.000.00-----------------------------------------------------------------1.00-----------