ID: uc010cad.2_intron_5_0_chr16_31008897_r.5p
GENE: STX1B(4)
chr16:31012049-31012298-


(1)
AGO1.ip
(2)
AGO2.ip
(2)
B-CELL
(8)
BRAIN
(2)
BREAST
(11)
CELL-LINE
(5)
CERVIX
(1)
HELA
(3)
LIVER
(1)
OTHER
(11)
SKIN

Sense strand
CACTGCAGACATCAAGAAGACGGCCAACAAGGTTCGGTCCAAATTGAAAGGTGAGGAGTACAATCCCTCAACCAGGAAGGAAAAGAATTGTGGGTGGAGCATGGTGGCTCAGGCCTTTGGGAGGGCGAGGCGGGGCCAATTGCTCAATCCCAGGAGTTCAACACCAGCCTGGGCAACATGGCAAAACTCTGTCTCTACAAAAAATACAAAAATTAGCTGGGCCAGTTTGGGAGGCCGAGGCGGGTGAATC
..............................................................................((....(((((.((((..(((((...((((((..(((((.........))))).))))))..)))))...)))).)).)))....)).((....))............................................................................
..............................................................................79.................................................................................................178......................................................................
SizePerfect hitTotal NormPerfect NormGSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532874(GSM532874)
G699T. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR040007(GSM532892)
G601T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040039(GSM532924)
G531T. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................AGAATTGTGGGTGGACATC....................................................................................................................................................194.000.002.001.001.00-------------------------------------------
...................................................................................AGAATTGTGGGTGGAAATC....................................................................................................................................................193.000.002.00-1.00-------------------------------------------
...................................................................................AGAATTGTGGGTGGAGATCT...................................................................................................................................................202.000.001.001.00--------------------------------------------
...................................................................................AGAATTGTGGGTGGACAT.....................................................................................................................................................182.000.001.001.00--------------------------------------------
...................................................................................AGAATTGTGGGTGGAGACG....................................................................................................................................................192.000.001.00-1.00-------------------------------------------
...................................................................................AGAATTGTGGGTGGAGATCA...................................................................................................................................................202.000.002.00---------------------------------------------
...................................................................................AGAATTGTGGGTGGAGAT.....................................................................................................................................................182.000.00-1.001.00-------------------------------------------
...................................................................................AGAATTGTGGGTGGAGCTCTG..................................................................................................................................................212.000.00-2.00--------------------------------------------
...................................................................................AGAATTGTGGGTGGAGAGCT...................................................................................................................................................202.000.001.00-1.00-------------------------------------------
.......................................................................................................................................................AGGAGTTCAACACCAGCCTCCAC............................................................................231.000.00----1.00-----------------------------------------
...................................................................................AGAATTGTGGGTGGACGTC....................................................................................................................................................191.000.00------1.00---------------------------------------
...................................................................................AGAATTGTGGGTGGAGGTTT...................................................................................................................................................201.000.00-1.00--------------------------------------------
........................................................................................TGTGGGTGGAGCATGAGCA...............................................................................................................................................191.000.00-----------------------------------------1.00----
...................................................................................AGAATTGTGGGTGGAGCAATCT.................................................................................................................................................221.000.00--1.00-------------------------------------------
...................................................................................AGAATTGTGGGTGGATAT.....................................................................................................................................................181.000.001.00---------------------------------------------
...................................................................................AGAATTGTGGGTGGAGCACGGA.................................................................................................................................................221.000.00-1.00--------------------------------------------
...................................................................................AGAATTGTGGGTGGAGCTTGG..................................................................................................................................................211.000.00--1.00-------------------------------------------
...................................................................................AGAATTGTGGGTGGAGA......................................................................................................................................................171.000.00-----------------1.00----------------------------
....................................................................................GAATTGTGGGTGGAGCG.....................................................................................................................................................171.000.00---------1.00------------------------------------
...................................................................................................CATGGTGGCTCAGGC........................................................................................................................................1501.001.00-------------------1.00--------------------------
........................................................................................TGTGGGTGGAGCATGAGTG...............................................................................................................................................191.000.00------------------------------------1.00---------
...................................................................................AGAATTGTGGGTGGAGATCG...................................................................................................................................................201.000.00----------------------1.00-----------------------
...................................................................................AGAATTGTGGGTGGACCGC....................................................................................................................................................191.000.00-1.00--------------------------------------------
.................................................................................................................................................................................................................................TTTGGGAGGCCGAGGCGGGTGAA..2301.001.00--------------------------------------1.00-------
.........................................................................................................................AGGGCGAGGCGGGGCATTT..............................................................................................................191.000.00-----1.00----------------------------------------
...................................................................................AGAATTGTGGGTGGAGATAT...................................................................................................................................................201.000.00-1.00--------------------------------------------
...................................................................................AGAATTGTGGGTGGAGATA....................................................................................................................................................191.000.001.00---------------------------------------------
...................................................................................AGAATTGTGGGTGGACACA....................................................................................................................................................191.000.00-----------1.00----------------------------------
...................................................................................................................................................................................................................................TGGGAGGCCGAGGCGGGTTTTC.221.000.00---1.00------------------------------------------
...........................................................................................................................................................................GGCAACATGGCAAAACTCTTAAA........................................................231.000.00---------------------------1.00------------------
...................................................................................AGAATTGTGGGTGGAGGT.....................................................................................................................................................181.000.00-1.00--------------------------------------------
...................................................................................AGAATTGTGGGTGGAGATC....................................................................................................................................................191.000.00--1.00-------------------------------------------
...................................................................................AGAATTGTGGGTGGAAAGC....................................................................................................................................................191.000.001.00---------------------------------------------
........................................................................................................................GAGGGCGAGGCGGGGGGT................................................................................................................181.000.00-----------------------------1.00----------------
......................................................................ACCAGGAAGGAAAAGGAGT.................................................................................................................................................................191.000.00------------------------------1.00---------------
........................................................................................TGTGGGTGGAGCATGAGTC...............................................................................................................................................191.000.00--1.00-------------------------------------------
...................................................................................AGAATTGTGGGTGGAGATG....................................................................................................................................................191.000.001.00---------------------------------------------
....................................................................................................................................GGGCCAATTGCTCAATGT....................................................................................................181.000.00-------------------------1.00--------------------
.....................................................................................................................................................................................................................................GGAGGCCGAGGCGGGTCGGG.201.000.00-------------------------------------1.00--------
..................................................................................................................................................................................................................................TTGGGAGGCCGAGGCGGGTGAACAC251.000.00---1.00------------------------------------------
......................................................................................................................GGGAGGGCGAGGCGGATTT.................................................................................................................191.000.00--------------1.00-------------------------------
........................................................................................................................GAGGGCGAGGCGGGGGGGT...............................................................................................................191.000.00---------------------------------------1.00------
...................................................................................AGAATTGTGGGTGGAGCACTTT.................................................................................................................................................221.000.001.00---------------------------------------------
........................CAACAAGGTTCGGTCCAACT..............................................................................................................................................................................................................201.000.00-----1.00----------------------------------------
...................................................................................AGAATTGTGGGTGGAGATAC...................................................................................................................................................201.000.00--1.00-------------------------------------------
...................................................................................AGAATTGTGGGTGGAGGTCT...................................................................................................................................................201.000.00-----------1.00----------------------------------
..............................................................................................................................................................................AACATGGCAAAACTCTGTTTAA......................................................221.000.00------1.00---------------------------------------
...................................................................................AGAATTGTGGGTGGAGAACG...................................................................................................................................................201.000.00------1.00---------------------------------------
.........................................................................................................................................AATTGCTCAATCCCAGG................................................................................................1740.250.25---------------------------------------------0.25

Antisense strand
CACTGCAGACATCAAGAAGACGGCCAACAAGGTTCGGTCCAAATTGAAAGGTGAGGAGTACAATCCCTCAACCAGGAAGGAAAAGAATTGTGGGTGGAGCATGGTGGCTCAGGCCTTTGGGAGGGCGAGGCGGGGCCAATTGCTCAATCCCAGGAGTTCAACACCAGCCTGGGCAACATGGCAAAACTCTGTCTCTACAAAAAATACAAAAATTAGCTGGGCCAGTTTGGGAGGCCGAGGCGGGTGAATC
..............................................................................((....(((((.((((..(((((...((((((..(((((.........))))).))))))..)))))...)))).)).)))....)).((....))............................................................................
..............................................................................79.................................................................................................178......................................................................
SizePerfect hitTotal NormPerfect NormGSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532874(GSM532874)
G699T. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR040007(GSM532892)
G601T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040039(GSM532924)
G531T. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................................................................GCCTGGGCAACATGGCAAAGGCC............................................................. 232.000.00---2.00------------------------------------------
........................................................................................................................................................AGGCTGGTGTTGAACTCC................................................................................ 1802.002.00--------2.00-------------------------------------
.................................TTTCAATTTGGACCGA......................................................................................................................................................................................................... 1612.002.00---------------------------------1.00------1.00-----
.................................CTTTCAATTTGGACCGA........................................................................................................................................................................................................ 1712.002.00----------2.00-----------------------------------
........................................................................................................................................................GGAGTTCAACACCAGCCTGGGCAAGGG....................................................................... 272.000.00---2.00------------------------------------------
.......................................ACTCCTCACCTTTCAATTTG............................................................................................................................................................................................... 2011.001.00-------1.00--------------------------------------
..................................................................................................................................................................................TGGCAAAACTCTGTCTCTGC.................................................... 201.000.00------------1.00---------------------------------
..............................................................................................................................................................................................GTCTCTACAAAAAATACAAAAACGC................................... 251.000.00-----1.00----------------------------------------
..........................................................................................................................................................................................TATTTTTTGTAGAGACAGAG............................................ 2001.001.00----------------1.00-----------------------------
..............................TCAATTTGGACCGAACC........................................................................................................................................................................................................... 1711.001.00------------------------1.00---------------------
........................................................................................................................................................................................................................GCCTCCCAAACTGGCCCAG............... 1911.001.00--------------------------------1.00-------------
.................................................................................................................................................................CACCAGCCTGGGCAACATGGCGTG................................................................. 241.000.00----1.00-----------------------------------------
.......................................................................................................................CAATTGGCCCCGCCTCGCCCTCC............................................................................................................ 2311.001.00---------------1.00------------------------------
.......................................................................................................................................................AGGAGTTCAACACCAGCCAATA............................................................................. 221.000.00-----------------------------------1.00----------
...........................................................................................................................................................GTTCAACACCAGCCTGGCCC........................................................................... 201.000.00---------------------1.00------------------------
.............................................GAAAGGTGAGGAGTATAC........................................................................................................................................................................................... 181.000.00-------1.00--------------------------------------
..........................................................................................................................................ATTGCTCAATCCCAGGAAC............................................................................................. 191.000.00---------1.00------------------------------------
..........................................................CTTCCTGGTTGAGGGATTGTA........................................................................................................................................................................... 2111.001.00------------------1.00---------------------------
.................................TCACCTTTCAATTTGGACCGA.................................................................................................................................................................................................... 2111.001.00--------------------1.00-------------------------
...........................................................................................................................................................GTTCAACACCAGCCTGGAA............................................................................ 191.000.00-------------------------------1.00--------------
............................................................................................................................................................TTCAACACCAGCCTGAAA............................................................................ 181.000.00----------------------------1.00-----------------
..........................................................................................................................................................AGTTCAACACCAGCCTTCAG............................................................................ 201.000.00--------------------------1.00-------------------
...........................................................................................................................................................GTTCAACACCAGCCTGCCC............................................................................ 191.000.00-----------------------1.00----------------------
.........TTGGCCGTCTTCTTGATG............................................................................................................................................................................................................................... 1811.001.00----------------------------------1.00-----------
.....................................................................................................................................................................................................................................GGAGGCCGAGGCGGGTGAATTTC 231.000.00-------------1.00--------------------------------
..................................................................................................................................................................................................................................TTGGGAGGCCGAGGCGGGTGAAGTGC 261.000.00----1.00-----------------------------------------
........................................................................................................................................................................................AACTCTGTCTCTACAAACTTG............................................. 211.000.00----1.00-----------------------------------------
.................................CCTTTCAATTTGGACCGA....................................................................................................................................................................................................... 1811.001.00------------------------------------------1.00---
............................................................................................................................................................................................................................CCTCGGCCTCCCAAACTGGC.......... 2020.500.50-------------------------------------------0.50--
........................................................................................................................GGCCCCGCCTCGCCCTC................................................................................................................. 1740.250.25--------------------------------------------0.25-