ID: uc010byf.1_intron_1_0_chr16_28489199_r.5p
GENE: CLN3(11)
chr16:28490765-28491014-


(1)
AGO1.ip
(4)
AGO2.ip
(11)
B-CELL
(4)
BRAIN
(2)
BREAST
(22)
CELL-LINE
(2)
CERVIX
(2)
HEART
(1)
HELA
(3)
LIVER
(2)
OTHER
(1)
OTHER.ip
(1)
RRP40.ip
(3)
SKIN
(1)
XRN.ip

Sense strand
AGATTCAAGCGATTCTCAAGCCTCAGCCTTCCGAGTAGCTGGGATTACAGGTGCGCCACCACGCCCAGCAAATTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTAGAGACAGAGTTTTGCTCTTGTAGCTCAGGCTAGAGTACAATGGCGTGATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAGGCGATTCTTCTGCCTCAGCCTCCTGCGTAGCTGGGATTACAGGCACGTGCCACCACACCT
....................................................(((......)))..((((((..(((((((((.......................))))))))).)))))).((.((((....)))).)).............................................................................................................
..................................................51........................................................................................141...........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM956925PAZD5GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR040031(GSM532916)
G013T. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR040043(GSM532928)
G428T. (cervix)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR343337SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
.........................................................................TTTTTGTTTTGTTTTGTTTTGTTTTGTCTCC..................................................................................................................................................31115.000.0069.0046.00-------------------------------------------------------
........................................................................TTTTTTGTTTTGTTTTGTTTTGTTTTGGCC....................................................................................................................................................3040.000.0020.006.0014.00------------------------------------------------------
.......................................................................................................................GCTCTTGTAGCTCAGTGG.................................................................................................................1813.000.00---9.00-1.00-------------------1.00-----------1.00------1.00------------
.........................................................................TTTTTGTTTTGTTTTGTTTTGTTTTGTCCCC..................................................................................................................................................3111.000.0010.001.00-------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTCTCC...........................................................................................................................................................2410.000.001.009.00-------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTCCC...........................................................................................................................................................248.000.00-8.00-------------------------------------------------------
........................................................................TTTTTTGTTTTGTTTTGTTTTGTTTTGGCTC...................................................................................................................................................317.000.003.004.00-------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTTGTTCGGG......................................................................................................................................................296.000.004.002.00-------------------------------------------------------
.........................................................................TTTTTGTTTTGTTTTGTTTTGTTTTGTCTC...................................................................................................................................................306.000.003.002.001.00------------------------------------------------------
.......................................................................................................................GCTCTTGTAGCTCAGTGGT................................................................................................................195.000.00---2.00-1.00--------------1.00---------------------------1.00--------
.......................................................................................................................GCTCTTGTAGCTCAGTCGG................................................................................................................195.000.00---------2.00--------------1.00---1.00------1.00---------------------
.........................................................................TTTTTGTTTTGTTTTGTTTTGTTTTGTCTTC..................................................................................................................................................315.000.005.00--------------------------------------------------------
......................................................................AATTTTTTGTTTTGTTTTGTTTCGGG..........................................................................................................................................................263.000.002.001.00-------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTTGTTCTTG......................................................................................................................................................293.000.00-3.00-------------------------------------------------------
.......................................................................................................................GCTCTTGTAGCTCAGTGGA................................................................................................................193.000.00---1.00-2.00---------------------------------------------------
......................TCAGCCTTCCGAGTAGCTGGG...............................................................................................................................................................................................................2103.003.00----1.00-------2.00--------------------------------------------
......................................................................AATTTTTTGTTTTGTTTTGTTTTGTTTCTC......................................................................................................................................................302.000.00-2.00-------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTTGTTTTCCC.....................................................................................................................................................302.000.002.00--------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTTGTTTCTGG.....................................................................................................................................................302.000.002.00--------------------------------------------------------
................................................................................TTTGTTTTGTTTTGTTTTGTTTTTTAGGAG............................................................................................................................................302.000.00-2.00-------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTCGGG..........................................................................................................................................................252.000.001.001.00-------------------------------------------------------
.....................................................................AAATTTTTTGTTTTGTTTTGTTTTTTTG.........................................................................................................................................................282.000.00-2.00-------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTTGTTTTGTCTT...................................................................................................................................................322.000.00-2.00-------------------------------------------------------
.................................AGTAGCTGGGATTACAGGTGCGAGCA...............................................................................................................................................................................................262.000.002.00--------------------------------------------------------
.......................................................................................................................GCTCTTGTAGCTCAGTTG.................................................................................................................182.000.00-----------------------------1.00---------------------1.00-----
.........................................................................................................................................................................................................................TAGCTGGGATTACAGGCACGTGGCCC.......262.000.002.00--------------------------------------------------------
....................................................................................................................................................................................................................................ACAGGCACGTGCCACCACACCTAGG252.000.002.00--------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTCGAG..........................................................................................................................................................252.000.001.001.00-------------------------------------------------------
........................................................................TTTTTTGTTTTGTTTTGTTTTGTTTTGGCCT...................................................................................................................................................312.000.002.00--------------------------------------------------------
.......................................................................................................................GCTCTTGTAGCTCAGTTGG................................................................................................................192.000.00---------------1.00----------------1.00------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTGGC...........................................................................................................................................................242.000.002.00--------------------------------------------------------
..............................................................................................................................................................GGCTCACTGCAACCTCCGCCTATA....................................................................242.000.00--------2.00------------------------------------------------
......................................................................AATTTTTTGTTTTGTTTTGTTTCGG...........................................................................................................................................................252.000.00-2.00-------------------------------------------------------
........................................................................TTTTTTGTTTTGTTTTGTTTTGTTTTGTCCTC..................................................................................................................................................322.000.002.00--------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTTGTTTCGAG.....................................................................................................................................................302.000.00-2.00-------------------------------------------------------
..............................................ACAGGTGCGCCACCACGCTCGG......................................................................................................................................................................................222.000.002.00--------------------------------------------------------
.........................................................................................................................................................ATCTTGGCTCACTGCAACCTCCGCCGGAG....................................................................291.000.001.00--------------------------------------------------------
.............................................................................................................................................................TGGCTCACTGCAACCTCCGCCTCCCTGTC................................................................291.000.00-1.00-------------------------------------------------------
.............................................................................................................................................................TGGCTCACTGCAACCTCCGCCTCGGGT..................................................................271.000.001.00--------------------------------------------------------
........................................................................TTTTTTGTTTTGTTTTGTTTTGTCGT........................................................................................................................................................261.000.001.00--------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTTGTTTTGTCTC...................................................................................................................................................321.000.001.00--------------------------------------------------------
...........................................ATTACAGGTGCGCCACCACGCCCGGC.....................................................................................................................................................................................261.000.001.00--------------------------------------------------------
........................................................................TTTTTTGTTTTGTTTTGTTGCTG...........................................................................................................................................................231.000.00-1.00-------------------------------------------------------
..........................................................................................................................................................TCTTGGCTCACTGCAACCTCCGCCGGGT....................................................................281.000.00-1.00-------------------------------------------------------
........................AGCCTTCCGAGTAGCTGGGATTACAGCGCG....................................................................................................................................................................................................301.000.00-1.00-------------------------------------------------------
.............................TCCGAGTAGCTGGGATTACA.........................................................................................................................................................................................................2001.001.00-------1.00-------------------------------------------------
........................................................................TTTTTTGTTTTGTTTTGTTTTGTCGC........................................................................................................................................................261.000.001.00--------------------------------------------------------
...........................................................................................................AGACAGAGTTTTGCTCTTGTAGCTCAGGC..................................................................................................................2911.001.00-1.00-------------------------------------------------------
..........................................................................................................................................................................................................................AGCTGGGATTACAGGCACGTGGCCT.......251.000.001.00--------------------------------------------------------
.......................................................................................................................................................TGATCTTGGCTCACTGCAACCTCCGCCTGG.....................................................................301.000.001.00--------------------------------------------------------
....................................................................................................................................................................CTGCAACCTCCGCCTCCCAGGGTGC.............................................................251.000.00-------------1.00-------------------------------------------
.................................AGTAGCTGGGATTACAGGTGCGCTCG...............................................................................................................................................................................................261.000.00-1.00-------------------------------------------------------
..............................................ACAGGTGCGCCACCACGCCCAGCTCG..................................................................................................................................................................................261.000.00-1.00-------------------------------------------------------
.......................................................................................................................................................TGATCTTGGCTCACTGCAACCTCCGCCTCCGAA..................................................................331.000.00-1.00-------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTTGTCTTG.......................................................................................................................................................281.000.001.00--------------------------------------------------------
......................................................................AATTTTTTGTTTTGTTTTGTTCTG............................................................................................................................................................241.000.00-1.00-------------------------------------------------------
................................................................................TTTGTTTTGTTTTGTTTTGTTTTTTAGCCTC...........................................................................................................................................311.000.00-1.00-------------------------------------------------------
.........................................................................TTTTTGTTTTGTTTTGTTTTGTTTTGGCTC...................................................................................................................................................301.000.00-1.00-------------------------------------------------------
.................................AGTAGCTGGGATTACAGGTGCGATCC...............................................................................................................................................................................................261.000.00-1.00-------------------------------------------------------
...................................................................................................TTTTTTAGAGACAGAGTTTTGCTTC..............................................................................................................................251.000.00-1.00-------------------------------------------------------
.........................................................................TTTTTGTTTTGTTTTGTTTTGTTTTGTCGAG..................................................................................................................................................311.000.001.00--------------------------------------------------------
............................................................................................................................................................................................AGGCGATTCTTCTGCCTCAGCCTG......................................241.000.00-------------1.00-------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTTGTTGGC.......................................................................................................................................................281.000.001.00--------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTCTCG...........................................................................................................................................................241.000.00-1.00-------------------------------------------------------
............................................................................................................................................GTACAATGGCGTGATAGA............................................................................................181.000.00--------------------------1.00------------------------------
..............................................ACAGGTGCGCCACCACGCCAAGG.....................................................................................................................................................................................231.000.001.00--------------------------------------------------------
...............................................................................................................................................CAATGGCGTGATCTTGGCATT......................................................................................211.000.00-----------------------1.00---------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTTGTCTGG.......................................................................................................................................................281.000.001.00--------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTTGTC..........................................................................................................................................................251.000.00-1.00-------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTTGTTTCGGC.....................................................................................................................................................301.000.00-1.00-------------------------------------------------------
......................................................................AATTTTTTGTTTTGTTTTGTTTTGAC..........................................................................................................................................................261.000.001.00--------------------------------------------------------
......................................................................AATTTTTTGTTTTGTTTTGTTTCTTG..........................................................................................................................................................261.000.001.00--------------------------------------------------------
....................................AGCTGGGATTACAGGTGCGAGGT...............................................................................................................................................................................................231.000.00-1.00-------------------------------------------------------
.............................................................................................................................................................TGGCTCACTGCAACCTCCGCCGGGT....................................................................251.000.00-1.00-------------------------------------------------------
.........................................................................................................................................................ATCTTGGCTCACTGCAACCTCCGCCTAGGT...................................................................301.000.00-1.00-------------------------------------------------------
.........................................................ACCACGCCCAGCAAATTTTTTGTGC........................................................................................................................................................................251.000.001.00--------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGCTCG.............................................................................................................................................................221.000.00--1.00------------------------------------------------------
.........................................................................TTTTTGTTTTGTTTTGTTTTGTTTTGTGCCC..................................................................................................................................................311.000.00-1.00-------------------------------------------------------
.................................................................................TTGTTTTGTTTTGTTTTGTTTTTTATTC.............................................................................................................................................281.000.001.00--------------------------------------------------------
.......................................................................................................................GCTCTTGTAGCTCAGTTTG................................................................................................................191.000.00---------------1.00-----------------------------------------
..........................CCTTCCGAGTAGCTGGTA..............................................................................................................................................................................................................181.000.00-------1.00-------------------------------------------------
.........................................................................................................................................................ATCTTGGCTCACTGCAACCTCCGCCGGCG....................................................................291.000.001.00--------------------------------------------------------
........................................................................TTTTTTGTTTTGTTTTGTTTTGTTTTGTCTCC..................................................................................................................................................321.000.001.00--------------------------------------------------------
...............................................................................................................................................CAATGGCGTGATCTTGGCTCAAA....................................................................................231.000.00-----------------------------------------1.00---------------
........................................................................TTTTTTGTTTTGTTTTGTTTTGTTGGC.......................................................................................................................................................271.000.00-1.00-------------------------------------------------------
....................................................................................................................................................................................................................................ACAGGCACGTGCCACCACACCTTGCC261.000.00-1.00-------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTGC............................................................................................................................................................231.000.00-1.00-------------------------------------------------------
............................................TTACAGGTGCGCCACCACTCT.........................................................................................................................................................................................211.000.001.00--------------------------------------------------------
.................................................................................................................................................................................................................................ATTACAGGCACGTGCCACCACACGGC261.000.001.00--------------------------------------------------------
.........................................................................TTTTTGTTTTGTTTTGTTTTGTTTTGTCTCA..................................................................................................................................................311.000.001.00--------------------------------------------------------
..........................................................................................................................................................................................................................AGCTGGGATTACAGGCACGTGCCACGCAC...291.000.001.00--------------------------------------------------------
.............................................TACAGGTGCGCCACCACGCCAAGG.....................................................................................................................................................................................241.000.00-1.00-------------------------------------------------------
........................................................................TTTTTTGTTTTGTTTTGTTTTGTCTCG.......................................................................................................................................................271.000.001.00--------------------------------------------------------
.......................................................................................................................GCTCTTGTAGCTCAGCGG.................................................................................................................181.000.00---1.00-----------------------------------------------------
...................................TAGCTGGGATTACAGGTGCGCCACTGC............................................................................................................................................................................................271.000.00-1.00-------------------------------------------------------
........................................................................TTTTTTGTTTTGTTTTGTTTTGTTTTGTCCTT..................................................................................................................................................321.000.001.00--------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTTGTTTCAAG.....................................................................................................................................................301.000.00-1.00-------------------------------------------------------
.........................................................................TTTTTGTTTTGTTTTGTTTTGTTTTGTCCTT..................................................................................................................................................311.000.001.00--------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTCCG...........................................................................................................................................................241.000.00-1.00-------------------------------------------------------
...................................................................................................................................................................................................................................TACAGGCACGTGCCACCACACCTAGG261.000.001.00--------------------------------------------------------
............................................................................................................................................................................TCCGCCTCCCAGGTTCAGGCGGTT......................................................241.000.001.00--------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTCGGG...........................................................................................................................................................241.000.001.00--------------------------------------------------------
......................................................................AATTTTTTGTTTTGTTTTGTTTCC............................................................................................................................................................241.000.001.00--------------------------------------------------------
...........................................................................................................................................................CTTGGCTCACTGCAACCTCCGGGTC......................................................................251.000.00-1.00-------------------------------------------------------
............................................................................................................................................................TTGGCTCACTGCAACCTCCGCCTCCCAGTTTG..............................................................321.000.00-1.00-------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTCGAG...............................................................................................................................................................201.000.001.00--------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTTGTCT.........................................................................................................................................................261.000.001.00--------------------------------------------------------
........................................................................TTTTTTGTTTTGTTTTGTTTTGTTTTGGTT....................................................................................................................................................301.000.001.00--------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTCTGG..........................................................................................................................................................251.000.00-1.00-------------------------------------------------------
.................................................................................TTGTTTTGTTTTGTTTTGTTTTTTAGAATGG..........................................................................................................................................311.000.00-1.00-------------------------------------------------------
............................................................................................................................................................TTGGCTCACTGCAACCTCCGCCTCCCAGGAC...............................................................311.000.00-1.00-------------------------------------------------------
............................................................................................................................................................TTGGCTCACTGCAACCTCCGCCTCCCACGG................................................................301.000.00------------------1.00--------------------------------------
..................................................................................................................................................................................................................................TTACAGGCACGTGCCACCACATGCC251.000.00-1.00-------------------------------------------------------
.......................................................................................................................................................TGATCTTGGCTCACTGCAACCTCCGCCCCGG....................................................................311.000.00-1.00-------------------------------------------------------
........................................................................TTTTTTGTTTTGTTTTGTTTTGTCC.........................................................................................................................................................251.000.00-1.00-------------------------------------------------------
.............................................................................................................................................................TGGCTCACTGCAACCTCCGCCTCCCAGGTGGAG............................................................331.000.00-1.00-------------------------------------------------------
................................................................................................................................................AATGGCGTGATCTTGTTT........................................................................................181.000.00--------1.00------------------------------------------------
.......................................................................................................................................................................................................................CGTAGCTGGGATTACTCTG................191.000.00----------------------------------------------1.00----------
.......................................................................ATTTTTTGTTTTGTTTTGTTTTGTTCGAG......................................................................................................................................................291.000.00-1.00-------------------------------------------------------
.............................................................................................................................................................................................GGCGATTCTTCTGCCTCGGCC........................................211.000.00-------------------------------1.00-------------------------
..................................................................................................................................................................................................TTCTTCTGCCTCAGCCTCGGAG..................................221.000.001.00--------------------------------------------------------
......................................................................AATTTTTTGTTTTGTTTTGTTTTGTTCGTG......................................................................................................................................................301.000.00-1.00-------------------------------------------------------
.......................................................................ATTTTTTGTTTTGTTTTGTTTGGG...........................................................................................................................................................241.000.001.00--------------------------------------------------------
...............................................................................................TTTGTTTTTTAGAGACAGAC.......................................................................................................................................201.000.00-1.00-------------------------------------------------------
...................................................................................................................................................................................................TCTTCTGCCTCAGCCTCCTGCGTAGCGGG..........................291.000.001.00--------------------------------------------------------
...............................................................................TTTTGTTTTGTTTTGTTTTGTTTTTTAGGAC............................................................................................................................................311.000.001.00--------------------------------------------------------
........................................................................TTTTTTGTTTTGTTTTGTTTTGTTTTGTTGGC..................................................................................................................................................321.000.001.00--------------------------------------------------------
......................................................................AATTTTTTGTTTTGTTTTGTTTTCCAG.........................................................................................................................................................271.000.00-1.00-------------------------------------------------------
........................................................................TTTTTTGTTTTGTTTTGTTTTGTCCTG.......................................................................................................................................................271.000.00-1.00-------------------------------------------------------
..............................................................................................................................................................................................................................GGGATTACAGGCACGTGCCACCGGC...251.000.00------------------1.00--------------------------------------
...................................................................................................................................CAGGCTAGAGTACAAGTG.....................................................................................................181.000.00---------------------------------------------1.00-----------
.............................................................................................................................................................TGGCTCACTGCAACCTCCGCCTCCCTCTC................................................................291.000.001.00--------------------------------------------------------
..........................................................................................................................................................................................................CCTCAGCCTCCTGCGTAGCTGCTC........................241.000.00------------------------------------1.00--------------------
..............CTCAAGCCTCAGCCTTCCGAGTAG....................................................................................................................................................................................................................2420.500.50-----------------------------------------------------0.50---
........................................GGGATTACAGGTGCGCCACCACGCCCAG......................................................................................................................................................................................2880.250.25--------------------0.25------------------------------------
....................................AGCTGGGATTACAGGTGCGCCACCACGCCC........................................................................................................................................................................................3070.140.140.14--------------------------------------------------------
.......................................................................................................................GCTCTTGTAGCTCAGG...................................................................................................................1690.110.11--------------------------------------------------------0.11
.......................................................................................................................GCTCTTGTAGCTCAGGGGTA...............................................................................................................2090.110.11---0.11-----------------------------------------------------
.......................................................................................................................GCTCTTGTAGCTCAGGG..................................................................................................................1790.110.11-------------------------------------------------------0.11-

Antisense strand
AGATTCAAGCGATTCTCAAGCCTCAGCCTTCCGAGTAGCTGGGATTACAGGTGCGCCACCACGCCCAGCAAATTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTAGAGACAGAGTTTTGCTCTTGTAGCTCAGGCTAGAGTACAATGGCGTGATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAGGCGATTCTTCTGCCTCAGCCTCCTGCGTAGCTGGGATTACAGGCACGTGCCACCACACCT
....................................................(((......)))..((((((..(((((((((.......................))))))))).)))))).((.((((....)))).)).............................................................................................................
..................................................51........................................................................................141...........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM956925PAZD5GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR040031(GSM532916)
G013T. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR040043(GSM532928)
G428T. (cervix)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR343337SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
..........................................................................................................................................................................CCTCCGCCTCCCAGGTTCAGGCGATG...................................................... 262.000.001.001.00-------------------------------------------------------
...............................................................................................................................................................................................CGATTCTTCTGCCTCAGCCTCCTAA.................................. 252.000.00-----------2.00---------------------------------------------
.............................................................................................................................................................................................GGCGATTCTTCTGCCTCAGCCTCG..................................... 242.000.002.00--------------------------------------------------------
.........................CCCAGCTACTCGGAAGGC............................................................................................................................................................................................................... 1802.002.00----------------2.00----------------------------------------
....................CCCAGCTACTCGGAAGGCTGAGG............................................................................................................................................................................................................... 2302.002.00------1.00-----------------------1.00--------------------------
...........................................................................................................................................................CTTGGCTCACTGCAACCTCCGCCG....................................................................... 242.000.002.00--------------------------------------------------------
.................................AGTAGCTGGGATTACAGGTGCGGCGG............................................................................................................................................................................................... 261.000.00-1.00-------------------------------------------------------
...................GCCTCAGCCTTCCGAGTGGGC.................................................................................................................................................................................................................. 211.000.00-------------------------------------------1.00-------------
.........................................................................................................................................................................ACCTCCGCCTCCCAGGTTCAGGCGATCTC.................................................... 291.000.001.00--------------------------------------------------------
.............................TCCGAGTAGCTGGGATCGAC......................................................................................................................................................................................................... 201.000.00---------------------------1.00-----------------------------
................................................................................................................................................................CTCACTGCAACCTCCGCCTCCCAGGTTA.............................................................. 281.000.00-------1.00-------------------------------------------------
............................................................................................................................................................................TCCGCCTCCCAGGTTCAGGCGATCG..................................................... 251.000.00-1.00-------------------------------------------------------
..............................................................................................................................................................................................GCGATTCTTCTGCCTCAAAGT....................................... 211.000.00-------------------------------------------------1.00-------
...................................................................................................................................................................................CCCAGGTTCAGGCGATTCTTCT................................................. 221.000.00----------1.00----------------------------------------------
......................................................................................................................................................................CTGAACCTGGGAGGCGGAGGTTGC............................................................ 2401.001.00----1.00----------------------------------------------------
.......................................................................................................................................................................................................CTGCCTCAGCCTCCTGCGTTGGG............................ 231.000.001.00--------------------------------------------------------
...............................................................................................................................................................................................................GCCTCCTGCGTAGCTGGGATTACGCG................. 261.000.00-1.00-------------------------------------------------------
...................................................................................................................................................................................................TCTTCTGCCTCAGCCTCCTCTGG................................ 231.000.00----------------------1.00----------------------------------
...........................CTTCCGAGTAGCTGGGAACTG.......................................................................................................................................................................................................... 211.000.00--------------------------------------1.00------------------
....................................................................................................................................................................CTGCAACCTCCGCCTCCCAAGA................................................................ 221.000.00------------------------------------------1.00--------------
..............................................................................................................................................................................CGCCTCCCAGGTTCAGGCGATCAGG................................................... 251.000.00-1.00-------------------------------------------------------
............................................................................................................................................................................TCCGCCTCCCAGGTTCAGGCGATC...................................................... 241.000.001.00--------------------------------------------------------
....................................................................................................................................................................CTGCAACCTCCGCCTCCCAGGTTCAA............................................................ 261.000.00----1.00----------------------------------------------------
........................................................................................................................................................................................................................................TGTGGTGGCACGTGC... 1501.001.00-----------------1.00---------------------------------------
......................................................GCCACCACGCCCAGCAAATTTACC............................................................................................................................................................................ 241.000.00-----------------------------------------------1.00---------
......................GCTACTCGGAAGGCTGA................................................................................................................................................................................................................... 1701.001.00----1.00----------------------------------------------------
......................................GCGCACCTGTAATCCCAG.................................................................................................................................................................................................. 1801.001.00--------------1.00------------------------------------------
.........CGATTCTCAAGCCTCAGCCTGT........................................................................................................................................................................................................................... 221.000.00----------------------------------------1.00----------------
..........................................................................................................................................................................CCTCCGCCTCCCAGGTTCAGGCGATGCGC................................................... 291.000.001.00--------------------------------------------------------
..............................................................................................................................................................GGCTCACTGCAACCTCCGCCTCCCAGGTCCC............................................................. 311.000.001.00--------------------------------------------------------
.....CAAGCGATTCTCAAGCCTCAGAC.............................................................................................................................................................................................................................. 231.000.00---------------------1.00-----------------------------------
...............................................................................................................................................................................................CGATTCTTCTGCCTCAGCAAA...................................... 211.000.00----------------------------------------------------1.00----
....................................................................................................................................................................................AAGAATCGCCTGAACCTGG................................................... 1901.001.00--------------1.00------------------------------------------
..........................................................................................................................................................................................................CCTCAGCCTCCTGCGTACGG............................ 201.000.00-1.00-------------------------------------------------------
.................................................................................................................................................................................CTCCCAGGTTCAGGCGATTACTG.................................................. 231.000.00-1.00-------------------------------------------------------
.............................................................................................................................................................................CTGAACCTGGGAGGCGG............................................................ 1701.001.00------1.00--------------------------------------------------
..........................................................................................................................................................................CCTCCGCCTCCCAGGTTCAGGCGATGT..................................................... 271.000.001.00--------------------------------------------------------
.........................GCCTTCCGAGTAGCTGGGATTACAGGTGCGTA................................................................................................................................................................................................. 321.000.00---------------------------------------1.00-----------------
...............................................................................................................................................................................AGAATCGCCTGAACCTGGGAGGC.................................................... 2301.001.00--------------------------------------------------1.00------
......................TCCCAGCTACTCGGAAGGCTGA.............................................................................................................................................................................................................. 2201.001.00---------------------------------1.00-----------------------
.........................................................................................................................................................................ACCTCCGCCTCCCAGGTTCAGGCGATTCGC................................................... 301.000.00-1.00-------------------------------------------------------
...............................................................................................................................................................................................CGATTCTTCTGCCTCAGCCTCCTGAG................................. 261.000.00-1.00-------------------------------------------------------
.............................................................................................................................................................................CCTGAACCTGGGAGGCGG........................................................... 1801.001.00-------------------1.00-------------------------------------
......................AGCTACTCGGAAGGCTGA.................................................................................................................................................................................................................. 1801.001.00-------------------1.00-------------------------------------
.....................................GCTGGGATTACAGGTGCGCCACAC............................................................................................................................................................................................. 241.000.001.00--------------------------------------------------------
......................TCAGCCTTCCGAGTAGCTA................................................................................................................................................................................................................. 191.000.00----------------------------------1.00----------------------
.........................................................................................................................................................................ACCTCCGCCTCCCAGGTTCACGTC......................................................... 241.000.00-1.00-------------------------------------------------------
..............................................................................................................................................................................................................AGCCTCCTGCGTAGCTGGGATTACT................... 251.000.00----------1.00----------------------------------------------
..........................................................................................................................................................................................................................AGCTGGGATTACAGGCACGTGGCT........ 241.000.00-----------------1.00---------------------------------------
..........................................................................................................................................................................AAGAATCGCCTGAACCTGGGAGGCGGAGG................................................... 2990.220.22------------------------------------------------------0.22--