ID: uc010bwb.2_intron_53_0_chr16_18893661_r.5p
GENE: (7)
chr16:18895192-18895441-


(2)
B-CELL
(3)
BRAIN
(2)
BREAST
(13)
CELL-LINE
(3)
CERVIX
(1)
HELA
(1)
KIDNEY
(2)
LIVER
(2)
OTHER
(14)
SKIN
(1)
TESTES

Sense strand
CTACTACTCTTCTTGGTCAGTTTCTGGAAGACATGGAAGCATATGCTGAGGTGAGTATATAGAAAGCTGTTTCTTAAAATTTTGGTTAAGAAAAAATCTTAAATTGTGCTAGATTTATTTTAAAATGGCTCAGACCTCCTGACATTTAAGCAGAAATTACATGCCCATTGCAATATTTTAAACATTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAATGGCACGGTC
.....................................................((((((....(((...((((((((........))))))))....)))....))))))...((((((((((((....((((.....))))..........(((((....(((.....)))..)))))..................)))))))))))).........................................
..................................................51............................................................................................................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189784SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343334SRR189785SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040018(GSM532903)
G701N. (cervix)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................................................................................................ACATTTTTTTTTTTTTTTTTAAAG.............................................247.000.003.00-4.00---------------------------------------------
.....................................................................................................................................................................................ACATTTTTTTTTTTTTTTTTATT..............................................235.000.003.00-1.00---------------------------------1.00-----------
.....................................................................................................................................................................................ACATTTTTTTTTTTTTTTTTACTC.............................................245.000.00-2.00-3.00--------------------------------------------
.......................CTGGAAGACATGGAAGCATATGCTGAGGACC....................................................................................................................................................................................................313.000.00-----3.00------------------------------------------
..........TCTTGGTCAGTTTCTGGAAGACATGGAAG...................................................................................................................................................................................................................2912.002.00-------------2.00----------------------------------
........................................................................................................................................................................TGCAATATTTTAAACTGT................................................................182.000.00----------2.00-------------------------------------
.....................................................................................................................................................................................ACATTTTTTTTTTTTTTTTTATTT.............................................242.000.001.00-1.00---------------------------------------------
.....................................................................................................................................................................................ACATTTTTTTTTTTTTTTTTATG..............................................232.000.001.00-1.00---------------------------------------------
.......................CTGGAAGACATGGAAGC..................................................................................................................................................................................................................1722.002.00--------------0.50--------------------1.00--0.50---------
.....................................................................................................................................................................................ACATTTTTTTTTTTTTTTTTAATT.............................................242.000.001.00-1.00---------------------------------------------
.....................TTCTGGAAGACATGGAAGCATATGCTGAG........................................................................................................................................................................................................2912.002.00----------------------1.00------1.00------------------
.....................................................................................................................................................................................ACATTTTTTTTTTTTTTTTTACCC.............................................242.000.00-2.00----------------------------------------------
.....................................................................................................................................................................................ACATTTTTTTTTTTTTTTTTATAG.............................................242.000.002.00-----------------------------------------------
.....................................................................................................................................................................................ACATTTTTTTTTTTTTTTTTATCG.............................................242.000.002.00-----------------------------------------------
....................................................................................................................................................................................AACATTTTTTTTTTTTTTTTTAAT..............................................241.000.00--1.00---------------------------------------------
......................TCTGGAAGACATGGAAGCA.................................................................................................................................................................................................................1911.001.00------------1.00-----------------------------------
.........................................................................................................................................CCTGACATTTAAGCAGAAATTACATGCC.....................................................................................2811.001.00--------------------------------1.00---------------
...................................................................................................................................................................................AAACATTTTTTTTTTTTTTTATTT...............................................241.000.00----1.00-------------------------------------------
........................TGGAAGACATGGAAGCATA...............................................................................................................................................................................................................1911.001.00----------------------------------1.00-------------
..................................................................................................................................................................................TAAACATTTTTTTTTTTTTTTTTTTAT.............................................271.000.001.00-----------------------------------------------
.....................................................................................................................................................................................ACATTTTTTTTTTTTTTTTTGAGAGGAG.........................................281.000.00-1.00----------------------------------------------
.................................................................................................................................................................................................................................CAGGCTGGAGTGCAATGGCACGGGC251.000.00--------1.00---------------------------------------
.................................................................................................................................................................TGCCCATTGCAATATTTTA......................................................................1911.001.00--------1.00---------------------------------------
......................................................GTATATAGAAAGCTGGCC..................................................................................................................................................................................181.000.00------------1.00-----------------------------------
.......................CTGGAAGACATGGAAGCATATGCTGAG........................................................................................................................................................................................................2711.001.00-----------1.00------------------------------------
.....................................................................................................................................................................................ACATTTTTTTTTTTTTTTTTATA..............................................231.000.001.00-----------------------------------------------
................................................................................................................................................................................TTTAAACATTTTTTTTTTTCTTT...................................................231.000.00----1.00-------------------------------------------
..........................................................................................................................................................................CAATATTTTAAACATTTTTTTTTTTTTTT...................................................2911.001.00--1.00---------------------------------------------
....................................................................................................................................................................................AACATTTTTTTTTTTTTTTTCGCT..............................................241.000.00----1.00-------------------------------------------
..............................................................................................................................................CATTTAAGCAGAAATTACATGC......................................................................................2211.001.00------------------1.00-----------------------------
.....................................................................................................................................................................................ACATTTTTTTTTTTTTTTTTATTG.............................................241.000.00--1.00---------------------------------------------
................................................................................................................................................................................TTTAAACATTTTTTTTTTTCTT....................................................221.000.00----1.00-------------------------------------------
..............GGTCAGTTTCTGGAAGACATGGAAG...................................................................................................................................................................................................................2511.001.00---------------------------------1.00--------------
.....ACTCTTCTTGGTCAGTTTCTGGAAGA...........................................................................................................................................................................................................................2611.001.00---------------------1.00--------------------------
.....................................................................................................................................................................................ACATTTTTTTTTTTTTTTTTACAC.............................................241.000.001.00-----------------------------------------------
............................................................................................................................................................................................................................TCACCCAGGCTGGAGTGCAATGGCACGGCCTC321.000.00-1.00----------------------------------------------
.......................................................................................................................................................................................................TTGAGATGGAGTCTCGCTCTGA.............................221.000.00--------------------------1.00---------------------
...............GTCAGTTTCTGGAAGACATGG......................................................................................................................................................................................................................2111.001.00-------------------------------1.00----------------
.................................................................................................................................................................................TTAAACATTTTTTTTTTTTCTCT..................................................231.000.00----1.00-------------------------------------------
.......................CTGGAAGACATGGAAGCATATGCTGAGGA......................................................................................................................................................................................................291.000.00-----1.00------------------------------------------
...............GTCAGTTTCTGGAAGACATGGAAG...................................................................................................................................................................................................................2411.001.00-----------1.00------------------------------------
.......................................................................................................TTGTGCTAGATTTATTCAT................................................................................................................................191.000.00-------1.00----------------------------------------
..............................................................................................................................................................................................................................ACCCAGGCTGGAGTGCAATGGA......221.000.00------------------------------1.00-----------------
............................AGACATGGAAGCATATGCTGAGGACC....................................................................................................................................................................................................261.000.00-------------------------1.00----------------------
........................TGGAAGACATGGAAGCATATGCTGAGGT......................................................................................................................................................................................................2811.001.00---------------------------1.00--------------------
.......................................................................................................................................................................................ATTTTTTTTTTTTTTTTTGATCGC...........................................241.000.00---1.00--------------------------------------------
..ACTACTCTTCTTGGTCAG......................................................................................................................................................................................................................................1811.001.00--------1.00---------------------------------------
.....................TTCTGGAAGACATGGAAGCATATG.............................................................................................................................................................................................................2411.001.00-----------------1.00------------------------------
....................................................................................................................................................................................AACATTTTTTTTTTTTTTTTCCTA..............................................241.000.00-1.00----------------------------------------------
..........................GAAGACATGGAAGCATATGCTGAGGACC....................................................................................................................................................................................................281.000.00-----1.00------------------------------------------
..................................................................................................................................................................................TAAACATTTTTTTTTTTTTTTTTTAAG.............................................271.000.001.00-----------------------------------------------
........................TGGAAGACATGGAAGCATATGCTGA.........................................................................................................................................................................................................2511.001.00---------------1.00--------------------------------
..................................................................................................................................................................................TAAACATTTTTTTTTTTTTTTTAAG...............................................251.000.001.00-----------------------------------------------
............................................................................................................................................................................................................................TCACCCAGGCTGGAGTGCAATGGCACGGTCCC321.000.00-1.00----------------------------------------------
........................TGGAAGACATGGAAGCATATG.............................................................................................................................................................................................................2111.001.00----------------------------1.00-------------------
.....................................................................................................................................................................................ACATTTTTTTTTTTTTTTTTATAT.............................................241.000.001.00-----------------------------------------------
...............GTCAGTTTCTGGAAGACATGGAAGAAGC...............................................................................................................................................................................................................2811.001.00------------------------1.00-----------------------
..........................................................................................................................................................................CAATATTTTAAACATTTCTGT...........................................................211.000.00----1.00-------------------------------------------
.......................CTGGAAGACATGGAAGCA.................................................................................................................................................................................................................1811.001.00--------------1.00---------------------------------
..................................................................................................................................................................................TAAACATTTTTTTTTTTTTTTTTCTG..............................................261.000.001.00-----------------------------------------------
...........................AAGACATGGAAGCATATGCTGAGGACC....................................................................................................................................................................................................271.000.00-----1.00------------------------------------------
.....................................................................................................................................................................................ACATTTTTTTTTTTTTTTTTGAGAAGG..........................................271.000.00-1.00----------------------------------------------
.......................CTGGAAGACATGGAAGCATATG.............................................................................................................................................................................................................2211.001.00--------------------1.00---------------------------
....................TTTCTGGAAGACATGGAAGCA.................................................................................................................................................................................................................2111.001.00----------------1.00-------------------------------
.......................................................................................................TTGTGCTAGATTTATCTAG................................................................................................................................191.000.00-------1.00----------------------------------------
..........................................................................................................................................................................CAATATTTTAAACATTTTTTTTTTTTTTTG..................................................3011.001.00-------------------------------------1.00----------
..................................................................................................................................................................................................................................AGGCTGGAGTGCAATGGCACGGTCACAG281.000.00-1.00----------------------------------------------
............................................................................................................................ATGGCTCAGACCTCCTGAC...........................................................................................................1970.290.29---------------------------------------0.29--------
.................................................................................................................................................................................TTAAACATTTTTTTTTTTTTTTTTG................................................2540.250.25----0.25-------------------------------------------
....................TTTCTGGAAGACATGGA.....................................................................................................................................................................................................................1750.200.20----------------------------------------0.20-------
..........................................................................................AAAAAATCTTAAATTGTGCTAGA.........................................................................................................................................2360.170.17-----------------------------------------0.17------
...................................................................................................................................AGACCTCCTGACATTTAAGCAGA................................................................................................2370.140.14-------------------------------------------0.14----
................................ATGGAAGCATATGCTGA.........................................................................................................................................................................................................1770.140.14--------------------------------------------0.14---
..........................GAAGACATGGAAGCATATGCTGAG........................................................................................................................................................................................................2470.140.14---------------0.14--------------------------------
...............................................................AAGCTGTTTCTTAAAATTTTGG.....................................................................................................................................................................2270.140.14---0.14--------------------------------------------
......................................................................................................................................CCTCCTGACATTTAAGCAGAAATT............................................................................................2470.140.14---------------------------------------------0.14--
.........................................TATGCTGAGGTGAGTATATAGAAAGC.......................................................................................................................................................................................2670.140.14------------------------------------------0.14-----
.............................................................................................................................TGGCTCAGACCTCCTGACATTTAAGC...................................................................................................2670.140.14-0.14----------------------------------------------
...............................................GAGGTGAGTATATAGAAAGCTG.....................................................................................................................................................................................2270.140.14----------------0.14-------------------------------
..................................................................................................................................CAGACCTCCTGACATTTAAGCAGAA...............................................................................................2570.140.14----------------------------------------------0.14-
......................................................GTATATAGAAAGCTGTTT..................................................................................................................................................................................1880.120.12-----------------------------------------------0.12

Antisense strand
CTACTACTCTTCTTGGTCAGTTTCTGGAAGACATGGAAGCATATGCTGAGGTGAGTATATAGAAAGCTGTTTCTTAAAATTTTGGTTAAGAAAAAATCTTAAATTGTGCTAGATTTATTTTAAAATGGCTCAGACCTCCTGACATTTAAGCAGAAATTACATGCCCATTGCAATATTTTAAACATTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAATGGCACGGTC
.....................................................((((((....(((...((((((((........))))))))....)))....))))))...((((((((((((....((((.....))))..........(((((....(((.....)))..)))))..................)))))))))))).........................................
..................................................51............................................................................................................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189784SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343334SRR189785SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040018(GSM532903)
G701N. (cervix)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................TTGGTTAAGAAAAAATGCTG..................................................................................................................................................... 202.000.00---------2.00--------------------------------------
..............................................TGAGGTGAGTATATACAAG......................................................................................................................................................................................... 192.000.00------2.00-----------------------------------------
...................................................................................................................................................................................................................................GGCTGGAGTGCAATGGCACGGTGGGG 261.000.00-1.00----------------------------------------------
.................................................................................................................................................................................................................................CAGGCTGGAGTGCAATGGCACGGTAGCG 281.000.00---1.00--------------------------------------------
............................................................................................................................................................................................................ATGGAGTCTCGCTCTGTCACCCAGGCTGGCAA.............. 321.000.00---1.00--------------------------------------------
...................................................................................................................................................................................................................................GGCTGGAGTGCAATGGCACGGTGAG 251.000.00-1.00----------------------------------------------
...................................................................................................................................................................................................................................GGCTGGAGTGCAATGGCACGGGGGC 251.000.00-1.00----------------------------------------------
...................................................................................................................................................................................................................................GGCTGGAGTGCAATGGCACGGTGGGC 261.000.00-1.00----------------------------------------------
...........................................................................................................................................................................AATATTTTAAACATTTACCT........................................................... 201.000.00-------1.00----------------------------------------
............TTGGTCAGTTTCTGGAATC........................................................................................................................................................................................................................... 191.000.00-------------------1.00----------------------------
.................................................................................................................................................................................................................................CAGGCTGGAGTGCAATGGCACGGTAC 261.000.00---1.00--------------------------------------------
...............................................................................TTTTGGTTAAGAAAAAATACA...................................................................................................................................................... 211.000.00------1.00-----------------------------------------
...........................................................................................................................................................................................................................GTCACCCAGGCTGGAGTGCAAC......... 221.000.00-----------------------1.00------------------------
..................................TACTCACCTCAGCATATGCTTCC................................................................................................................................................................................................. 2370.140.14-----0.14------------------------------------------