ID: uc010bsu.1_intron_0_0_chr16_2802856_f.3p
GENE: SRRM2(1)
chr16:2807273-2807522+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(3)
BRAIN 		(5)
BREAST 		(16)
CELL-LINE 		(2)
HEART 		(2)
HELA 		(7)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(14)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
ATCCACTGTTCTAGAGGGAGTAGTAAGTAGAGGGAAGAAAGATGATGGGAAAAGATCAGACAGAAGGGACTTTTGGGTGAGCGAAAAGTTCTGTGTGCGCATGGAGAGGGAGGGGCCCCTTTTGGGAATGAGGGAAATGGAAACCTGGGACTGGGGAAAGTGTCCTGTCGAGCTTAACCCTGAAGGGATTTGTTCTTCAGGTACGAGGAACAGCAAATTCAGGAAAAAGTGGCGACCTTTCGACTCATGT
...........................................................(((((.....((((.((((((((......(((((((....))))))).((.((((..(((((........))))).........(((......))).......)))).))..))))).))).))))...))))).........................................................
...........................................................60...................................................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577453(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR029126(GSM416755)
143B. (cell line)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
................................................................AGGGACTTTTGGGTGCAGA.......................................................................................................................................................................196.000.00-----2.00-1.00---1.00-----------------------------------1.001.00----------
............................................................................................................................................................................................................................AGGAAAAAGTGGCGACCTTTCG........2215.005.005.00----------------------------------------------------------
................................................................AGGGACTTTTGGGTGCAG........................................................................................................................................................................184.000.00---------------2.002.00------------------------------------------
..........................................................................................................................................................................................................................TCAGGAAAAAGTGGCGACCTT...........2113.003.00--3.00--------------------------------------------------------
.......................................................................................................................................................................................................................AATTCAGGAAAAAGTGGCGAC..............2113.003.001.00---------2.00------------------------------------------------
........................................................................................................................................................................CGAGCTTAACCCTGAAGGGAT.............................................................2113.003.00-3.00---------------------------------------------------------
..................................................................................................................................................................TCCTGTCGAGCTTAACCCTGAAGGGAT.............................................................2713.003.00---3.00-------------------------------------------------------
.....................................................................................................................................................................TGTCGAGCTTAACCCTG....................................................................1712.002.00------------2.00----------------------------------------------
..................................................................................................................................................................TCCTGTCGAGCTTAACCCTGA...................................................................2112.002.00---------1.00------------------------------1.00------------------
....................................................................................................................................................................CTGTCGAGCTTAACCCTGAAGGGAT.............................................................2512.002.00-------------------------------------------------1.00----1.00----
...............................................................................................TGCGCATGGAGAGGGTTTT........................................................................................................................................192.000.00--------2.00--------------------------------------------------
............................................................................................................................................................................................................................AGGAAAAAGTGGCGACCT............1812.002.00------1.00------------------------------------------------1.00---
....................................................................................................................................................................CTGTCGAGCTTAACCCTGAAGG................................................................2212.002.00-------------2.00---------------------------------------------
.............................................................................................................................................................................................................AGGAACAGCAAATTCAGG...........................1812.002.00------2.00----------------------------------------------------
............................................................................................................................................................................................................................AGGAAAAAGTGGCGACCTTTCGAC......2412.002.001.00------1.00---------------------------------------------------
............................................................................................................................................................................................................GAGGAACAGCAAATTCAGGAAAAAGTGGC.................2911.001.00--------------------------------1.00--------------------------
................................................................................................................................................................TGTCCTGTCGAGCTTAACCCTGAAGG................................................................2611.001.00---------------------------------1.00-------------------------
................................................................AGGGACTTTTGGGTGAAGA.......................................................................................................................................................................191.000.00----------------------------1.00------------------------------
......................GTAAGTAGAGGGAAGAAAGATGATA...........................................................................................................................................................................................................251.000.00------------------1.00----------------------------------------
..................................................................................................................................................................TCCTGTCGAGCTTAACCCTG....................................................................2011.001.00-1.00---------------------------------------------------------
..................................................................................................................................................................TCCTGTCGAGCTTAACCCTGAAGG................................................................2411.001.00-------------------------------1.00---------------------------
...........................................................................................................................................................................................................................CAGGAAAAAGTGGCGAC..............1711.001.00---------------------------------------1.00-------------------
................................................................AGGGACTTTTGGGTGCGGG.......................................................................................................................................................................191.000.00--------1.00--------------------------------------------------
..................................................................................................................................AGGGAAATGGAAACCTGG......................................................................................................1831.001.00-----------------------------------------1.00-----------------
...............................................................................................................................................................................................................................AAAAAGTGGCGACCTTTCGACTCATG.2611.001.00-----------------------------------1.00-----------------------
................................GGAAGAAAGATGATGGAG........................................................................................................................................................................................................181.000.001.00----------------------------------------------------------
......................GTAAGTAGAGGGAAGAAAGATGATGGG.........................................................................................................................................................................................................2711.001.00---------------------------1.00-------------------------------
...................................................................................................................................................................................................................AGCAAATTCAGGAAAAAGTGGCGA...............2411.001.001.00----------------------------------------------------------
....................................................................................................................................................................................................................................GTGGCGACCTTTCGACTCATG.2111.001.00------------------------------------------1.00----------------
...................................................................................................................................................................CCTGTCGAGCTTAACCCTGAAGGA...............................................................241.000.00--------------------------------------------------------1.00--
...................................................................................................................................................................................................................................AGTGGCGACCTTTCGACTCACG.221.000.00-------------------1.00---------------------------------------
......................................................................................................................................................................................................AGGTACGAGGAACAGCAA..................................1811.001.00--------------1.00--------------------------------------------
................................................................AGGGACTTTTGGGTGTAGA.......................................................................................................................................................................191.000.00-------------------------------------------1.00---------------
.................................................................................................................................................................................CCCTGAAGGGATTTGTTCTT.....................................................2011.001.00-----------------1.00-----------------------------------------
................................................................AGGGACTTTTGGGTGAAGAT......................................................................................................................................................................201.000.00-----1.00-----------------------------------------------------
................................................................................................................................................................................ACCCTGAAGGGATTTACA........................................................181.000.00----1.00------------------------------------------------------
.......................................................................................................................................................................................................................AATTCAGGAAAAAGTGGCGACCT............2311.001.00----------------------------------------------1.00------------
...........................................................................................................................................................................................................CGAGGAACAGCAAATTCAGG...........................2011.001.00--------------------------------------1.00--------------------
...................................................AAGATCAGACAGAAGGGACTTTTGG..............................................................................................................................................................................2511.001.00------------------------1.00----------------------------------
........................................................................................................................................................................................................GTACGAGGAACAGCAAATTCAGGAA.........................2511.001.00--------------1.00--------------------------------------------
.......................................................................................................GAGAGGGAGGGGCCCCGGGC...............................................................................................................................201.000.00---------------------------------------------------1.00-------
.......................................................................................................................................AATGGAAACCTGGGACTGG................................................................................................1911.001.00-----------------------1.00-----------------------------------
......................................................................................................................................................................................................................................GGCGACCTTTCGACTCAT..1811.001.00---------------------1.00-------------------------------------
...........................................................................................TGTGTGCGCATGGAGAGGGAGGGGCCC....................................................................................................................................2711.001.00-----------------------------------------------------1.00-----
...................................................................................................................................................................................................................................AGTGGCGACCTTTCGACT.....1811.001.00-------------------------1.00---------------------------------
.....................AGTAAGTAGAGGGAAGAAAGATGA.............................................................................................................................................................................................................2411.001.00------------------1.00----------------------------------------
................................................................AGGGACTTTTGGGTGAGCGAAAAG..................................................................................................................................................................2411.001.00--------------------------1.00--------------------------------
................................................................AGGGACTTTTGGGTGCAGT.......................................................................................................................................................................191.000.00-----------1.00-----------------------------------------------
......................................................................................................................................................................................................................AAATTCAGGAAAAAGCCAC.................191.000.00----------------------1.00------------------------------------
................................................................................................................................................................................ACCCTGAAGGGATTTGTTCTT.....................................................2111.001.00----1.00------------------------------------------------------
.............................................................................................................................................................................TTAACCCTGAAGGGATTTGTTCTTC....................................................2511.001.00-------------------------------------1.00---------------------
....................................................................ACTTTTGGGTGAGCGAAAAGTT................................................................................................................................................................2211.001.00----------------------------------1.00------------------------
..................................................................................................................................................................TCCTGTCGAGCTTAACCCTGAAG.................................................................2311.001.00--------------------------------------------------1.00--------
................................................................................................................................................................................ACCCTGAAGGGATTTGTTC.......................................................1911.001.00------------------------------1.00----------------------------
..................................................................................................................................................GGGACTGGGGAAAGTGTCCTGTCGAGCT............................................................................2811.001.00-----------------1.00-----------------------------------------
.....................................................................................AAGTTCTGTGTGCGCATGGAGAGGG............................................................................................................................................2511.001.00--------------------1.00--------------------------------------
......................................................................................................................................................................GTCGAGCTTAACCCTGAAGGG...............................................................2111.001.00----------------------------------------------------1.00------
..........................................................................................................................................................................................................................TCAGGAAAAAGTGGCGACC.............1911.001.00-----------------------------1.00-----------------------------
...........................................................................................................................................................................................................CGAGGAACAGCAAATTCAGGAA.........................2211.001.00------------------------------------1.00----------------------
.........................................................................................................................................................GGGAAAGTGTCCTGTTGAA..............................................................................191.000.00----1.00------------------------------------------------------
..............................................................................................................................................................AGTGTCCTGTCGAGCTTAACCCT.....................................................................2311.001.00---------------------------------------------1.00-------------
..................................................................................................................................................................................................................................AAGTGGCGACCTTTCGAC......1811.001.001.00----------------------------------------------------------
............................................................................................................................................................................................................................AGGAAAAAGTGGCGACCTTTCGACT.....2511.001.00-------1.00---------------------------------------------------
......................................................................................................................................................................................................................AAATTCAGGAAAAAGTGGCGACCTTTCGACTC....3211.001.00---------------------------------------------------------1.00-
..........................................................................................................................................................................................................................TCAGGAAAAAGTGGCGA...............1711.001.00---------1.00-------------------------------------------------
...........................................................................................................................................................................................................CGAGGAACAGCAAATT...............................1620.500.50----------------------------------------------------------0.50
....................................GAAAGATGATGGGAAAA.....................................................................................................................................................................................................1780.120.12---------0.12-------------------------------------------------

Antisense strand
ATCCACTGTTCTAGAGGGAGTAGTAAGTAGAGGGAAGAAAGATGATGGGAAAAGATCAGACAGAAGGGACTTTTGGGTGAGCGAAAAGTTCTGTGTGCGCATGGAGAGGGAGGGGCCCCTTTTGGGAATGAGGGAAATGGAAACCTGGGACTGGGGAAAGTGTCCTGTCGAGCTTAACCCTGAAGGGATTTGTTCTTCAGGTACGAGGAACAGCAAATTCAGGAAAAAGTGGCGACCTTTCGACTCATGT
...........................................................(((((.....((((.((((((((......(((((((....))))))).((.((((..(((((........))))).........(((......))).......)))).))..))))).))).))))...))))).........................................................
...........................................................60...................................................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577453(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR029126(GSM416755)
143B. (cell line)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
.........................AGTAGAGGGAAGAAACG................................................................................................................................................................................................................ 171.000.00--------------------------------------------1.00--------------
.............................................................................................................................................................................................................TGAATTTGCTGTTCCT............................. 1660.170.17-------------------0.17---------------------------------------