ID: uc010bsf.2_intron_3_0_chr16_2201612_f
GENE: (4)
chr16:2201562-2201745+


(1)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(7)
HELA 		(7)
LIVER 		(2)
OTHER 		(4)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TGTTTCAGAACAAAGTTCTGGACGTGGATGGTGTGAAGGTGAAGCTGCAGGTAAGGTGACTGGCAGAGGACAAGTTGGGGGACAGGGGACACCAGGGAAGGGCTGGACAGCCTGACCAGTGCCTGTCGCTGCAGATGTGGGACACAGCTGGTCAGGAGCGGTTCCGCAGTGTTACCCATGCCTA
................................................................................((((((...(((...((..(((((....)))))..)).))))))))).........................................................
................................................................................81...................................................134................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM416733(GSM416733)
HEK293. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
..................................................GTAAGGTGACTGGCAGAGGACAAGTTGGGGGACAGGGGACACCAGGGAAGGGCTGGACAGCCTGACCAGTGCCTGTCGCTGCA...................................................83137.0037.0033.00--2.00---2.00-------------------------------
..................................................GTAAGGTGACTGGCAGAGGACAAGTTGGGGGACAGGGGACACCAGGGAAGGGCTGGACAGCCTGACCAGTGCCTGTCGCTGCAG..................................................84128.0028.0017.008.00-1.00---2.00-------------------------------
..................................................GTAAGGTGACTGGCAGAGGACAAGTTGGGGGACAGGGGACACCAGGGAAGGGCTGGACAGCCTGACCAGTGCCTGTCGCTGC....................................................8217.007.007.00--------------------------------------
..................................................GTAAGGTGACTGGCAGAGGACAAGTTGGGGGACAGGGGACACCAGGGAAGGGCTGGACAGCCTGACCAGTGCCTGTCGCTG.....................................................8114.004.00---1.00-3.00---------------------------------
..............................GTGTGAAGGTGAAGCTGCAG......................................................................................................................................2013.003.00-----------1.00----2.00----------------------
.........................GGATGGTGTGAAGGTGAAGCTG.........................................................................................................................................2213.003.00---------3.00-----------------------------
.....................................................AGGTGACTGGCAGAGGACAAGTTGGGGGACAGGGGACACCAGGGAAGGGCTGGACAGCCTGACCAGTGCCTGTCGCTGCA...................................................8012.002.00-----2.00---------------------------------
....................GACGTGGATGGTGTGAAGGTGAAGCTGC........................................................................................................................................2812.002.00----2.00----------------------------------
...........AAAGTTCTGGACGTGGATGGTAGCA....................................................................................................................................................252.000.00----------2.00----------------------------
.................CTGGACGTGGATGGTGTGAAGGT................................................................................................................................................2312.002.00------2.00--------------------------------
.........ACAAAGTTCTGGACGTGGATGGTGTGAAGGTGAAGCTGT........................................................................................................................................391.000.00------------1.00--------------------------
........AACAAAGTTCTGGACGTGGATGG.........................................................................................................................................................2311.001.00---------------1.00-----------------------
.....................................................................................GGGACACCAGGGAAGAAGC................................................................................191.000.00--------------------1.00------------------
..............GTTCTGGACGTGGATGGTAA......................................................................................................................................................201.000.00-------------------------1.00-------------
..................................................GTAAGGTGACTGGCAGAGGACAAGTTGGGGGACAGGGGACACCAGGGAAGGGCTGGACAGCCTGACCAGTGCCTGTCGCTGCGGA.................................................8511.007.00---1.00-----------------------------------
................................GTGAAGGTGAAGCTGCTGG.....................................................................................................................................191.000.00------------------------------1.00--------
.................CTGGACGTGGATGGTGTGAAG..................................................................................................................................................2111.001.00---------------------------------1.00-----
.....................................................................................................................AGTGCCTGTCGCTGCAG..................................................1711.001.00-----------------1.00---------------------
......................................................GGTGACTGGCAGAGGACAAATA............................................................................................................221.000.00------------1.00--------------------------
..................................................GTAAGGTGACTGGCAGAG....................................................................................................................1811.001.00--------------1.00------------------------
.......................GTGGATGGTGTGAAGGTGAAGCTGCA.......................................................................................................................................2611.001.00--------1.00------------------------------
.......................GTGGATGGTGTGAAGGTGAAGCT..........................................................................................................................................2311.001.00--1.00------------------------------------
......................CGTGGATGGTGTGAAGGTGAAGCTGC........................................................................................................................................2611.001.00--1.00------------------------------------
................TCTGGACGTGGATGGTGTGAAGGGG...............................................................................................................................................251.000.00--------1.00------------------------------
.....................................................................................................................AGTGCCTGTCGCTGCAGA.................................................1811.001.00------------------------1.00--------------
...................GGACGTGGATGGTGTGAAAAT................................................................................................................................................211.000.00---------------1.00-----------------------
..................................................................................................AGGGCTGGACAGCCTGAC....................................................................1821.001.00----1.00----------------------------------
.......................GTGGATGGTGTGAAGGTG...............................................................................................................................................1811.001.00---------------------1.00-----------------
.................CTGGACGTGGATGGTGTG.....................................................................................................................................................1811.001.00------1.00--------------------------------
...........................................................CTGGCAGAGGACAAGTTT...........................................................................................................181.000.00--------1.00------------------------------
......................CGTGGATGGTGTGAAGGTGAAGCTGCA.......................................................................................................................................2711.001.00--1.00------------------------------------
.........................GGATGGTGTGAAGGTGAAGCTGCAG......................................................................................................................................2511.001.00------------------------------------1.00--
..........................................................................................ACCAGGGAAGGGCTGAGCG...........................................................................191.000.00-----------------------------1.00---------
...................GGACGTGGATGGTGTGAAGGGG...............................................................................................................................................221.000.00--------1.00------------------------------
........................TGGATGGTGTGAAGGTGAAGCTGCAG......................................................................................................................................2611.001.00------1.00--------------------------------
.......GAACAAAGTTCTGGACGTGGATGGTGTG.....................................................................................................................................................2811.001.00--------------------------------1.00------
..........CAAAGTTCTGGACGTGGA............................................................................................................................................................1811.001.00------------------1.00--------------------
.........................................................................................................................................TGGGACACAGCTGGTCAGGAGCG........................2311.001.00---------------------------1.00-----------
.............AGTTCTGGACGTGGATGG.........................................................................................................................................................1820.500.50-------------------------------------0.50-
...............TTCTGGACGTGGATGGTG.......................................................................................................................................................1820.500.50-----------------0.50---------------------
...............................................................................................GGAAGGGCTGGACAGC.........................................................................1640.250.25-----------------0.25---------------------

Antisense strand
TGTTTCAGAACAAAGTTCTGGACGTGGATGGTGTGAAGGTGAAGCTGCAGGTAAGGTGACTGGCAGAGGACAAGTTGGGGGACAGGGGACACCAGGGAAGGGCTGGACAGCCTGACCAGTGCCTGTCGCTGCAGATGTGGGACACAGCTGGTCAGGAGCGGTTCCGCAGTGTTACCCATGCCTA
................................................................................((((((...(((...((..(((((....)))))..)).))))))))).........................................................
................................................................................81...................................................134................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM416733(GSM416733)
HEK293. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
.....................................................................................................CTGGTCAGGCTGTCCAGC................................................................. 1812.002.00----2.00----------------------------------
..................................................................................................................GCAGCGACAGGCACTGGT.................................................... 1812.002.00-----------2.00---------------------------
.................................................................................................................................................GCGGAACCGCTCCTGACCAGCT................. 2212.002.00--2.00------------------------------------
............................................................................................................................TCCCACATCTGCAGCGAC.......................................... 1812.002.00--------------------------1.00-1.00----------
..................................GAAGGTGAAGCTGCAGTCT................................................................................................................................... 191.000.00-----------------------1.00---------------
.......................................................................................................................................................GTAACACTGCGGAACCGCTCCTGA......... 2411.001.00-----------------------------------1.00---
.......GAACAAAGTTCTGGACACT.............................................................................................................................................................. 191.000.00----------------------1.00----------------
..................................................................................................................................................CGGAACCGCTCCTGACCAGC.................. 2011.001.00-------------1.00-------------------------
............................................................................CCTGGTGTCCCCTGTCCCCC........................................................................................ 2011.001.00----------1.00----------------------------
...............................................................................................................................................CTGCGGAACCGCTCCTGACCAGCTGT............... 2611.001.00-------------------------------1.00-------
..........................................................................................................AGCGACAGGCACTGGTCAGGCTGT...................................................... 2411.001.00----------------------------------1.00----
..............................................................................................................................................................AACACTGCGGAACCG........... 1511.001.00-------------1.00-------------------------
...................................................................................................................................................ACACTGCGGAACCGCTCCTGACCAG............ 2511.001.00-------------------1.00-------------------
...................................................................................................................................................ACTGCGGAACCGCTCCTGACCAG.............. 2311.001.00--------------1.00------------------------
.....................................................................................................TGGTCAGGCTGTCCAGC.................................................................. 1720.500.50--------------------------------------0.50