ID: uc010bse.1_intron_6_0_chr16_2143740_r
GENE: PKD1(14)
chr16:2143690-2143861-


(3)
AGO2.ip 		(3)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(17)
CELL-LINE 		(6)
HEART 		(1)
HELA 		(1)
OTHER 		(15)
SKIN 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
CCAGCAGCGCCAGCTTCCTGGCCTCATTCCTCGGCTGGGAGCCACTGAAGGTGAGGGGGCTGCCAGGGGTAGGCTACAGGCCTCCATCACGGGGGACCCCTCTGAAGCCACCCCCTCCCCAGGTCTTGCTGGAAGCCCTGTACTTCTCACTGGTGGCCAAGCGGCTGCACCC
.......................................................((((.....(((((..((((.(((((((((.....))))).....)))).))))..)))))))))....................................................
..................................................51.....................................................................122................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189785SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038860(GSM458543)
MM426. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189787SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
.......................................................................................................................................CCCTGTACTTCTCACTGG...................1817.007.007.00----------------------------------------------------
...................................................TGAGGGGGCTGCCAGGGGTAGGC..................................................................................................2314.004.00----4.00------------------------------------------------
...................................................TGAGGGGGCTGCCAGGGGTAGGCTACAG.............................................................................................2813.003.00-------2.00-----1.00---------------------------------------
...................................................TGAGGGGGCTGCCAGGGGTAGGCT.................................................................................................2413.003.00--2.00--------------------------1.00-----------------------
....................................................................................................TCTGAAGCCACCCCCTCCCCAGAATC..............................................263.000.00------3.00----------------------------------------------
...................................................TGAGGGGGCTGCCAGGGGTAG....................................................................................................2112.002.00-1.00--------------------1.00------------------------------
................................................................................................CCCCTCTGAAGCCACCCCCTCC......................................................2212.002.00--2.00--------------------------------------------------
..................................................GTGAGGGGGCTGCCAGGGGTAGGCT.................................................................................................2512.002.00----------2.00------------------------------------------
..............................................................................................................................................CTTCTCACTGGTGGCCAGA...........192.000.00---------------2.00-------------------------------------
...................................................TGAGGGGGCTGCCAGGGGTA.....................................................................................................2012.002.00-1.00-----------------------------------1.00---------------
............................CCTCGGCTGGGAGCCACTGAAGGT........................................................................................................................2412.002.00------------------------1.00------------------1.00---------
..................................................GTGAGGGGGCTGCCAGTTTT......................................................................................................202.000.00-----------2.00-----------------------------------------
...................................................TGAGGGGGCTGCCAGGGGT......................................................................................................1912.002.00---------1.00------------------------1.00------------------
............................CCTCGGCTGGGAGCCACTGAAG..........................................................................................................................2212.002.00------------2.00----------------------------------------
...................................................TGAGGGGGCTGCCAGGGGCAG....................................................................................................211.000.00-----------------1.00-----------------------------------
.............................................................................................................................................................CAAGCGGCTGCACCCCA171.000.00--------------------------------------1.00--------------
..................................................GTGAGGGGGCTGCCAGGGGTAGGCTA................................................................................................2611.001.00---1.00-------------------------------------------------
...................................................TGAGGGGGCTGCCAGGGGTAGG...................................................................................................2211.001.00----------------------------------------------1.00------
...................................................TGAGGGGGCTGCCAGGGGTAGGCTA................................................................................................2511.001.00--------------------------1.00--------------------------
.........................................................................................................................................CTGTACTTCTCACTGGTGGCCAAGCGG........2711.001.00--------------------1.00--------------------------------
..................................................GTGAGGGGGCTGCCAGGGGTA.....................................................................................................2111.001.00------------------1.00----------------------------------
..............................................................................................................................................CTTCTCACTGGTGGCCAAGCGG........2211.001.00-----------------------------------------------1.00-----
...................................................TGAGGGGGCTGCCAGGGGTAGC...................................................................................................2211.002.00----------------1.00------------------------------------
............................................................................................GGGACCCCTCTGAAGCCACC............................................................2011.001.00---------1.00-------------------------------------------
.....................CCTCATTCCTCGGCTGGGAGCCACTGAAGG.........................................................................................................................3011.001.00-----1.00-----------------------------------------------
..................................................GTGAGGGGGCTGCCAGGGGTAGGCTACAGGCCTCC.......................................................................................3511.001.00------------------------------------------------1.00----
................................................................................................CCCCTCTGAAGCCACCCCCTCCATAA..................................................2611.002.00-------------1.00---------------------------------------
..................................................GTGAGGGGGCTGCCAGGGGTAGGA..................................................................................................241.000.00---1.00-------------------------------------------------
...................................................TGAGGGGGCTGCCAGGGGTAGGCTAC...............................................................................................2611.001.00----------------------------------------1.00------------
...................................................TGAGGGGGCTGCCAGGGGTAAT...................................................................................................2211.002.00---1.00-------------------------------------------------
......................CTCATTCCTCGGCTGGGAGCCACTGAAGGT........................................................................................................................3011.001.00--------------------------------------------1.00--------
..................................................GTGAGGGGGCTGCCAGTAGA......................................................................................................201.000.00---------------------------------1.00-------------------
..............................................................................................GACCCCTCTGAAGCCACCCCCTC.......................................................2311.001.00-----------------1.00-----------------------------------
..............................................................................................GACCCCTCTGAAGCCACCCCCTCCCAAT..................................................281.000.00-------------------------1.00---------------------------
..................................................GTGAGGGGGCTGCCAGGGGTAGGCTAC...............................................................................................2711.001.00---1.00-------------------------------------------------
...................................................................................CCATCACGGGGGACCCCTCTGAAGC................................................................2511.001.00---------------------------------------------1.00-------
..............................................................................................................................................CTTCTCACTGGTGGCCAAGC..........2011.001.00-------------------------------1.00---------------------
...........................................................................................GGGGACCCCTCTGAAGCTACC............................................................211.000.00---------------------1.00-------------------------------
..............................................................................................GACCCCTCTGAAGCCACCCCCT........................................................2211.001.00----------------1.00------------------------------------
...................................................TGAGGGGGCTGCCAGGGGTAGGCTACAGGC...........................................................................................3011.001.00-----1.00-----------------------------------------------
...........................................................................................GGGGACCCCTCTGAAGCCACCCCCTCT......................................................271.000.00---------------------------1.00-------------------------
..............................TCGGCTGGGAGCCACTGAAGGTC.......................................................................................................................231.000.00--------1.00--------------------------------------------
..................................................GTGAGGGGGCTGCCAGGGG.......................................................................................................1921.001.00--------------------------------------------------0.500.50-
..........................................................................................GGGGGACCCCTCTGAAGC................................................................1811.001.00------------------------------------1.00----------------
...................................................TGAGGGGGCTGCCAGGGGTAGGCTACAGGCC..........................................................................................3111.001.00-----1.00-----------------------------------------------
.............................CTCGGCTGGGAGCCACTGAAGGTGAGG....................................................................................................................2711.001.00-----------------------1.00-----------------------------
...................GGCCTCATTCCTCGGCTGGGAGC..................................................................................................................................2311.001.00-------------------1.00---------------------------------
.......................................................................................................................................................GGTGGCCAAGCGGCTGGTCG.201.000.00-------1.00---------------------------------------------
..........................TTCCTCGGCTGGGAGCCACTGAAGGTCT......................................................................................................................281.000.00------------------------------------------1.00----------
.......................TCATTCCTCGGCTGGGA....................................................................................................................................1711.001.00----------------------------1.00------------------------
...................................................TGAGGGGGCTGCCAGGGGTAGA...................................................................................................2211.002.00-1.00---------------------------------------------------
...........................TCCTCGGCTGGGAGCCACTGAA...........................................................................................................................2211.001.00---------------------------------------1.00-------------
..............................................................................................GACCCCTCTGAAGCCACCCCCTCCCT....................................................261.000.00-1.00---------------------------------------------------
..................................................GTGAGGGGGCTGCCAGGGGCAG....................................................................................................2220.501.00-------------------------------------------------0.50---
......................CTCATTCCTCGGCTGG......................................................................................................................................1620.500.50------------------0.50----------------------------------
...................................................TGAGGGGGCTGCCAGGG........................................................................................................1730.330.33-0.33---------------------------------------------------
..........................TTCCTCGGCTGGGAGC..................................................................................................................................1640.250.25--------0.25--------------------------------------------
.............................................................................................................................................ACTTCTCACTGGTGGC...............1650.200.20----------------------------------------------------0.20

Antisense strand
CCAGCAGCGCCAGCTTCCTGGCCTCATTCCTCGGCTGGGAGCCACTGAAGGTGAGGGGGCTGCCAGGGGTAGGCTACAGGCCTCCATCACGGGGGACCCCTCTGAAGCCACCCCCTCCCCAGGTCTTGCTGGAAGCCCTGTACTTCTCACTGGTGGCCAAGCGGCTGCACCC
.......................................................((((.....(((((..((((.(((((((((.....))))).....)))).))))..)))))))))....................................................
..................................................51.....................................................................122................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189785SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038860(GSM458543)
MM426. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189787SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
....................................................................................................................................AAGCCCTGTACTTCTTGAG..................... 192.000.00--------------2.00--------------------------------------
........................................................................GCTACAGGCCTCCATCGGTG................................................................................ 201.000.00--------------------------------1.00--------------------
.....AGCGCCAGCTTCCTGCTC..................................................................................................................................................... 181.000.00-----------------------------------------1.00-----------
..AGCAGCGCCAGCTTCCTG........................................................................................................................................................ 181.000.00------------------------------1.00----------------------
........................................................................................................AAGCCACCCCCTCCCCAGGGG............................................... 211.000.00-----------------------------------1.00-----------------
......................................................................AGGCTACAGGCCTCCATCACGCTG.............................................................................. 241.000.00--------1.00--------------------------------------------