| (1) AGO1.ip | (5) AGO2.ip | (1) BRAIN | (1) BREAST | (14) CELL-LINE | (1) FIBROBLAST | (2) HELA | (5) OTHER | (1) SKIN |
| GAATATCTGCTATTCCACTGGGAATTGTTGAGAGTGATTTGTGTGATATTAAATCCATAGAACTTGGGCCAGGTGCTGTGGCTCATGCCTGTAATCCTGCCAAGGTGGGAGGACTACTTGAGACCAGGAGTTTAAGACCAGCCTGGACAACATAGCAAGACCCCGTCTGTACAAAACAATTTTTTTTTTTAATTATCCAGGTGTGGTAACACATGCATGTAGTCCTAGCTGCTTGGGAGGCTGAGATGGG ..............................................................................................................................................(((((.......((.((((...))))))..((((.((....)).)))).....))))).................................................. ..............................................................................................................................................143......................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | GSM956925Ago2D5(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | GSM956925Ago2PAZ(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189784 | GSM956925Ago2(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | GSM956925PAZD5 | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | SRR189782 | GSM956925AGO2Paz8(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | GSM956925Paz8D5(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (cell line) | GSM1105748AGO1(GSM1105748) small RNA sequencing data. (ago1 hela) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR189787 | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR444049(SRX128897) Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR189786 | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | RoviraIPAgo2(Rovira) total RNA. (ago2 breast) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................................CAACATAGCAAGACCCCGT.................................................................................... | 19 | 0 | 19.00 | 19.00 | - | - | - | 6.00 | 5.00 | - | - | 3.00 | - | - | 2.00 | - | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................AATTTTTTTTTTTAATTAACAG................................................... | 22 | 14.00 | 0.00 | - | - | 7.00 | - | - | 5.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................AAGACCAGCCTGGACAACGGTG............................................................................................... | 22 | 3.00 | 0.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................TGCTGTGGCTCATGC.................................................................................................................................................................. | 15 | 0 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................ATGCATGTAGTCCTAGCCACT................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ..................................................................................................................................................ACAACATAGCAAGACCCCGT.................................................................................... | 20 | 0 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................GGGCCAGGTGCTGTGGCTGGTC................................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................TGGACAACATAGCAAGAC......................................................................................... | 18 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......................................................................................................................TGAGACCAGGAGTTTAAGACCAGCCGGGC....................................................................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................TAGCAAGACCCCGTCTGTTA.............................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................GCAAGACCCCGTCTGTTA.............................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................AGACCAGCCTGGACAACATAGCAAGACCCCCCCC.................................................................................. | 34 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................CCAGGAGTTTAAGACCAGCCGGGC....................................................................................................... | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................TAAGACCAGCCTGGACAACAGCG............................................................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................AGACCAGGAGTTTAAGACCAGCCGGGG....................................................................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................CAACATAGCAAGACCCCGTCTGTACAA............................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................ATAGAACTTGGGCCAAGGC............................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| .....................................................................................................................................AAGACCAGCCTGGACAACTAGC............................................................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................ACCAGCCTGGACAACATAGCA............................................................................................. | 21 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................TGTGGTAACACATGCTG................................ | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................GGGAGGCTGAGATGGTACA | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ......................................................................................................................................................CATAGCAAGACCCCG..................................................................................... | 15 | 0 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................TTTTTTTAATTATCCCAG................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................AAGACCAGCCTGGACAACATAG............................................................................................... | 22 | 0 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................CCAGGTGCTGTGGCTCATGC.................................................................................................................................................................. | 20 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................AGGTGGGAGGACTACTTGAGACCAGGAG........................................................................................................................ | 28 | 5 | 0.20 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................TTAAGACCAGCCTGGACAACATAGCAAGACCCC...................................................................................... | 33 | 5 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 |
| ...................................................................................................................................................................................TTTTTTTTTTTAATTATCCAG.................................................. | 21 | 7 | 0.14 | 0.14 | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GAATATCTGCTATTCCACTGGGAATTGTTGAGAGTGATTTGTGTGATATTAAATCCATAGAACTTGGGCCAGGTGCTGTGGCTCATGCCTGTAATCCTGCCAAGGTGGGAGGACTACTTGAGACCAGGAGTTTAAGACCAGCCTGGACAACATAGCAAGACCCCGTCTGTACAAAACAATTTTTTTTTTTAATTATCCAGGTGTGGTAACACATGCATGTAGTCCTAGCTGCTTGGGAGGCTGAGATGGG ..............................................................................................................................................(((((.......((.((((...))))))..((((.((....)).)))).....))))).................................................. ..............................................................................................................................................143......................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | GSM956925Ago2D5(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | GSM956925Ago2PAZ(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189784 | GSM956925Ago2(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | GSM956925PAZD5 | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | SRR189782 | GSM956925AGO2Paz8(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | GSM956925Paz8D5(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (cell line) | GSM1105748AGO1(GSM1105748) small RNA sequencing data. (ago1 hela) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR189787 | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR444049(SRX128897) Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR189786 | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | RoviraIPAgo2(Rovira) total RNA. (ago2 breast) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................TGATTTGTGTGATATTG....................................................................................................................................................................................................... | 17 | 3.00 | 0.00 | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................GGGCCAGGTGCTGTGGCTCATGCCTGTCTCC.......................................................................................................................................................... | 31 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................GGGCCAGGTGCTGTGGCTCATGCCTGTACC........................................................................................................................................................... | 30 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................TCATGCCTGTAATCCTGCCACCCA................................................................................................................................................ | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................TTAAATCCATAGAACACG........................................................................................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................AGACCAGCCTGGACAACATACC.............................................................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| .................................................................GGGCCAGGTGCTGTGGCTCATGCCTGTACTTG......................................................................................................................................................... | 32 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................CCAGCCTGGACAACATAGCAACCGC........................................................................................ | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................CATGCATGTAGTCCTAGCTAGCC................ | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ................................................................................................................................................................CCCCGTCTGTACAAAAACT....................................................................... | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................CCTGGACAACATAGCAAGACCCCGTT................................................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................GTAGTCCTAGCTGCTTGGGAGGCTCGG..... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................AGGATTACAGGCATGAGCCACAGCACCTGGCCC........................................................................................................................................................ | 33 | 4 | 0.25 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |