ID: uc010bkb.1_intron_2_0_chr15_75090654_f
GENE: CSK(3)
chr15:75090604-75091005+


(2)
AGO2.ip 		(8)
B-CELL 		(7)
BRAIN 		(4)
BREAST 		(10)
CELL-LINE 		(1)
HEART 		(4)
LIVER 		(1)
OTHER 		(9)
SKIN 		(1)
XRN.ip

Sense strand
TACTGTGACTCGGGGACGCCAGAGCTCCTGAGAAGATGTCAGCAATACAGGTACCACAGGGGTGAGGGTCTGGGACATGCAAGCATTCCCACCAGCCCCAGCGGGGTGCTTAGCAGAGGAGAGAGGATGCAGCTTAGATCAACCCACTCCCCTTTTTCCCAGCACTCAGTCAGGTACAGGCCTGGGGAAGTGGGGGAGTCTCAACAGGAAGGGACCCAGGGCTCGTTCTCCGGGCAGAGCACCTCACCCAGGCTCACAGAGGCCAGCTCAGAGGCTGTGACCACGAGGGTGCGCCAGCAGGTGGCTGGAGGGGGCCCAGGCTGCACCCGCCCACGTGTCACCTGCCTTGCAGGCCGCCTGGCCATCCGGTACAGAATGTATTGCCAAGTACAACTTCCACGG
............................................................................................................................................................................(((...((((((((((.(((..((.(((((........)))))))...(((((.....)))))....))).)).)))))))).......))).((...(((((.((((.((((.((((((.(((((.....)))))....(((....))))))))).....))))))))..)))))))....................................................
.......................................................................................................................................................................168.....................................................................................................................................................................................352................................................
SizePerfect hitTotal NormPerfect NormSRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
............................................................................................................................................................................GGTACAGGCCTGGGGGACC...................................................................................................................................................................................................................1913.000.0013.00----------------------------------------------
............................................................................................................................................................................GGTACAGGCCTGGGGGACT...................................................................................................................................................................................................................1911.000.0011.00----------------------------------------------
............................................................................................................................................................................GGTACAGGCCTGGGGGCCA...................................................................................................................................................................................................................198.000.008.00----------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................CACGTGTCACCTGCCTTGCAGT.................................................227.000.00--5.00------------------------1.00---1.00---------------
............................................................................................................................................................................GGTACAGGCCTGGGGGAAA...................................................................................................................................................................................................................197.000.007.00----------------------------------------------
.......ACTCGGGGACGCCAGAGCTC.......................................................................................................................................................................................................................................................................................................................................................................................2014.004.00------4.00----------------------------------------
............................................................................................................................................................................GGTACAGGCCTGGGGGCC....................................................................................................................................................................................................................183.000.003.00----------------------------------------------
............................................................................................................................................................................GGTACAGGCCTGGGGGAT....................................................................................................................................................................................................................183.000.003.00----------------------------------------------
....GTGACTCGGGGACGCCAGAGCTCCTG....................................................................................................................................................................................................................................................................................................................................................................................2612.002.00--------2.00--------------------------------------
.............GGACGCCAGAGCTCCTGAGAAGATGT...........................................................................................................................................................................................................................................................................................................................................................................2612.002.00-2.00---------------------------------------------
............................................................................................................................................................................GGTACAGGCCTGGGGGAA....................................................................................................................................................................................................................182.000.002.00----------------------------------------------
.ACTGTGACTCGGGGACGCCAGAGCTCCTG....................................................................................................................................................................................................................................................................................................................................................................................2912.002.00---2.00-------------------------------------------
.............GGACGCCAGAGCTCCTGAGAAGATGTCAGC.......................................................................................................................................................................................................................................................................................................................................................................3012.002.00----1.00-----------------------------------1.00------
........CTCGGGGACGCCAGAGCTCCTGAGAAGATG............................................................................................................................................................................................................................................................................................................................................................................3012.002.00---2.00-------------------------------------------
..........................................................................................................................................................................CAGGTACAGGCCTGGGGGACA...................................................................................................................................................................................................................212.000.001.00-----------------------------1.00----------------
....................AGAGCTCCTGAGAAGATGT...........................................................................................................................................................................................................................................................................................................................................................................1912.002.00-2.00---------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................TACAGAATGTATTGCCAAGCACA..........232.000.00----------2.00------------------------------------
.................GCCAGAGCTCCTGAGAAGATGT...........................................................................................................................................................................................................................................................................................................................................................................2212.002.00-2.00---------------------------------------------
.....TGACTCGGGGACGCCAGAGCCCTG.....................................................................................................................................................................................................................................................................................................................................................................................242.000.00-----2.00-----------------------------------------
............................................................................................................................................................................GGTACAGGCCTGGGGGCAA...................................................................................................................................................................................................................192.000.002.00----------------------------------------------
..........................................................................................................................................................................CAGGTACAGGCCTGGGGGAC....................................................................................................................................................................................................................201.000.00---------------------1.00-------------------------
..............................AGAAGATGTCAGCAATAC..................................................................................................................................................................................................................................................................................................................................................................1811.001.00---------1.00-------------------------------------
............GGGACGCCAGAGCTCCTGAGAAGATG............................................................................................................................................................................................................................................................................................................................................................................2611.001.00-----------1.00-----------------------------------
............................................................................................................................................................................................................................................................................................................GTGGCTGGAGGGGGCAAG....................................................................................181.000.00----------------------1.00------------------------
............................................................................................................................................................................GGTACAGGCCTGGGGGGAA...................................................................................................................................................................................................................191.000.001.00----------------------------------------------
................CGCCAGAGCTCCTGAGAAGATGT...........................................................................................................................................................................................................................................................................................................................................................................2311.001.00-------------------1.00---------------------------
............................................................................................................................................................................GGTACAGGCCTGGGGGATA...................................................................................................................................................................................................................191.000.001.00----------------------------------------------
.................................................................................................................CAGAGGAGAGAGGATAGGC..............................................................................................................................................................................................................................................................................191.000.00---------------1.00-------------------------------
...........GGGGACGCCAGAGCTCCTGAGAAGATG............................................................................................................................................................................................................................................................................................................................................................................2711.001.00-------------------------1.00---------------------
.........TCGGGGACGCCAGAGCTCCTGAGAAGATGCC..........................................................................................................................................................................................................................................................................................................................................................................311.000.00-----1.00-----------------------------------------
.............................................................................................................................................................................................................................................................................AGAGGCTGTGACCACGAGGGGG...............................................................................................................221.000.00------------1.00----------------------------------
...................CAGAGCTCCTGAGAAGATGT...........................................................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------------1.00--------------------
................................................................AGGGTCTGGGACATGGATG...............................................................................................................................................................................................................................................................................................................................191.000.00--------------------------------1.00--------------
.................GCCAGAGCTCCTGAGAAGATG............................................................................................................................................................................................................................................................................................................................................................................2111.001.00----------------1.00------------------------------
.........TCGGGGACGCCAGAGCTCCTGC...................................................................................................................................................................................................................................................................................................................................................................................221.000.00-------------------------------------1.00---------
............................................................................................................................................................................GGTACAGGCCTGGGGGACG...................................................................................................................................................................................................................191.000.001.00----------------------------------------------
.....TGACTCGGGGACGCCAGAGCT........................................................................................................................................................................................................................................................................................................................................................................................2111.001.00---------------------------------1.00-------------
.....................GAGCTCCTGAGAAGATGTCAGCAATACAGGCC.............................................................................................................................................................................................................................................................................................................................................................321.000.00-------1.00---------------------------------------
..........................................................................ACATGCAAGCATTCCCG.......................................................................................................................................................................................................................................................................................................................171.000.00---------------1.00-------------------------------
..........CGGGGACGCCAGAGCTCCTGAGAAGATGTCAGCA......................................................................................................................................................................................................................................................................................................................................................................3411.001.00----1.00------------------------------------------
............GGGACGCCAGAGCTCCTGAGAAGATGT...........................................................................................................................................................................................................................................................................................................................................................................2711.001.00-------------1.00---------------------------------
............GGGACGCCAGAGCTCCTGAGAAGAT.............................................................................................................................................................................................................................................................................................................................................................................2511.001.00---------------------------------------1.00-------
............GGGACGCCAGAGCTCCTGAGAAGATGTC..........................................................................................................................................................................................................................................................................................................................................................................2811.001.00-------------1.00---------------------------------
...................CAGAGCTCCTGAGAAGATAA...........................................................................................................................................................................................................................................................................................................................................................................201.000.00--------------------1.00--------------------------
...........................................................................................................................AGGATGCAGCTTAGATCAACCCACTCCC...........................................................................................................................................................................................................................................................2811.001.00---1.00-------------------------------------------
.....TGACTCGGGGACGCCAGAGCTCCGAG...................................................................................................................................................................................................................................................................................................................................................................................261.000.00-----1.00-----------------------------------------
...............................................................GAGGGTCTGGGACATGCAAGCATTC..........................................................................................................................................................................................................................................................................................................................2511.001.00-----------------1.00-----------------------------
...........................................................................................................................................................................................................................................................................................................................................CACGTGTCACCTGCCTTG.....................................................1811.001.00----------------------------1.00------------------
...........GGGGACGCCAGAGCTCCTGAGAAGATGTCAGC.......................................................................................................................................................................................................................................................................................................................................................................3211.001.00----1.00------------------------------------------
.......................................................................................................................AGAGAGGATGCAGCTTAGATA......................................................................................................................................................................................................................................................................211.000.00------------1.00----------------------------------
....................AGAGCTCCTGAGAAGATGTCAGCA......................................................................................................................................................................................................................................................................................................................................................................2411.001.00-----------1.00-----------------------------------
............................................................GGTGAGGGTCTGGGACATGCA.................................................................................................................................................................................................................................................................................................................................2111.001.00-------1.00---------------------------------------
...................................................TACCACAGGGGTGAGGCT.............................................................................................................................................................................................................................................................................................................................................181.000.00-----------------------1.00-----------------------
...................................................................................................AGCGGGGTGCTTAGCAGAGGAGAG.......................................................................................................................................................................................................................................................................................2411.001.00-1.00---------------------------------------------
...........................................................................CATGCAAGCATTCCCGTTC....................................................................................................................................................................................................................................................................................................................191.000.00--------------------------------------1.00--------
............................................................................................................................................................................GGTACAGGCCTGGGGGAGA...................................................................................................................................................................................................................191.000.001.00----------------------------------------------
..................CCAGAGCTCCTGAGAAGATGTCAGCAA.....................................................................................................................................................................................................................................................................................................................................................................2711.001.00---------1.00-------------------------------------
....................AGAGCTCCTGAGAAGATGTC..........................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------------------1.00-----------------
............................................................................................................................................................................................................................................................CTCACAGAGGCCAGCTCAGAGGCTG.............................................................................................................................2511.001.00------------------------------------------1.00----
..................CCAGAGCTCCTGAGAAGATGTCA.........................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------------1.00--------------------------------
................CGCCAGAGCTCCTGAGAAGA..............................................................................................................................................................................................................................................................................................................................................................................2011.001.00-------1.00---------------------------------------
..............GACGCCAGAGCTCCTGAGA.................................................................................................................................................................................................................................................................................................................................................................................1911.001.00----1.00------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................TCCGGTACAGAATGTATT....................1811.001.00-----------------------------------------1.00-----
...........................................................................................................................................................................AGGTACAGGCCTGGGGGACA...................................................................................................................................................................................................................201.000.001.00----------------------------------------------
...TGTGACTCGGGGACGCCAGA...........................................................................................................................................................................................................................................................................................................................................................................................2011.001.00------------------1.00----------------------------
..........................CCTGAGAAGATGTCAGC.......................................................................................................................................................................................................................................................................................................................................................................1711.001.00----------------------------------1.00------------
...................................................................................................................................................................................................................................................................................................................................................................................CAGAATGTATTGCCAAG..............1720.500.50-------------------------------------------0.50---
....................................................................................................................................................................................................................................................................................................................AGGGGGCCCAGGCTGC..............................................................................1670.140.14--------------------------------------------0.14--
.................................................................GGGTCTGGGACATGC..................................................................................................................................................................................................................................................................................................................................1580.120.12----------------------------------------------0.12
..........................................................................................................................GAGGATGCAGCTTAG.........................................................................................................................................................................................................................................................................1580.120.12---------------------------------------------0.12-

Antisense strand
TACTGTGACTCGGGGACGCCAGAGCTCCTGAGAAGATGTCAGCAATACAGGTACCACAGGGGTGAGGGTCTGGGACATGCAAGCATTCCCACCAGCCCCAGCGGGGTGCTTAGCAGAGGAGAGAGGATGCAGCTTAGATCAACCCACTCCCCTTTTTCCCAGCACTCAGTCAGGTACAGGCCTGGGGAAGTGGGGGAGTCTCAACAGGAAGGGACCCAGGGCTCGTTCTCCGGGCAGAGCACCTCACCCAGGCTCACAGAGGCCAGCTCAGAGGCTGTGACCACGAGGGTGCGCCAGCAGGTGGCTGGAGGGGGCCCAGGCTGCACCCGCCCACGTGTCACCTGCCTTGCAGGCCGCCTGGCCATCCGGTACAGAATGTATTGCCAAGTACAACTTCCACGG
............................................................................................................................................................................(((...((((((((((.(((..((.(((((........)))))))...(((((.....)))))....))).)).)))))))).......))).((...(((((.((((.((((.((((((.(((((.....)))))....(((....))))))))).....))))))))..)))))))....................................................
.......................................................................................................................................................................168.....................................................................................................................................................................................352................................................
SizePerfect hitTotal NormPerfect NormSRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
...........................................................................................................................................CAACCCACTCCCCTTTACA.................................................................................................................................................................................................................................................... 191.000.00--------------1.00--------------------------------
...........................................................................................................................................CAACCCACTCCCCTTTC...................................................................................................................................................................................................................................................... 171.000.00------------------------------------1.00----------
...........................................................ATGTCCCAGACCCTCACCC.................................................................................................................................................................................................................................................................................................................................... 1911.001.00-----------------------------------1.00-----------
................................................................................................................................................................................................................................................................................................................................CTGCACCCGCCCACGACGA............................................................... 191.000.00------------------------1.00----------------------