ID: uc010bih.1_intron_12_0_chr15_69727902_f
GENE: (13)
chr15:69727852-69728040+


(1)
BRAIN 		(1)
BREAST 		(8)
CELL-LINE 		(6)
HELA 		(2)
OTHER 		(2)
SKIN 		(1)
XRN.ip

Sense strand
GAACATGTATGGATGTCCTAAGAGAGAACCAAATGTATGGAACTAACAAGGTAAGCAGCAGCCTTCTCTGTTCTTTTGTATAGTTTCATTTGTGTGCATTTTTTTTGCGTAACACATTTGGATATGAATGTCTTTGTAGATGGTTCCATATCGAGATTCAAAGTTAACCCATCTGTTCAAGAACTACTT
....................................................................................((((..((((((((.......)))...)))))..)))).......((((....))))................................................
...................................................................................84...........................................................145..........................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR029124(GSM416753)
HeLa. (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................GTAAGCAGCAGCCTTCTCTGTTCTTTTGTATAGTTTCATTTGTGTGCATTTTTTTTGCGTAACACATTTGGATATGAATGTCTTTGTAG..................................................89148.0048.0035.0011.00----2.00-------------
.....................................................................GTTCTTTTGTATAGTTTCATTTGTGTGCATTTTTTTTGCGTAACACATTTGGATATGAATGTCTTTGTAG..................................................7017.007.00-7.00------------------
..................................................GTAAGCAGCAGCCTTCTCTGTTCTTTTGTATAGTTTCATTTGTGTGCATTTTTTTTGCGTAACACATTTGGATATGAATGTCTTTGTAGT.................................................9016.0048.00-6.00------------------
..................................................GTAAGCAGCAGCCTTCTCTGTTCTTTTGTATAGTTTCATTTGTGTGCATTTTTTTTGCGTAACACATTTGGATATGAATGTCTTTGTAGTT................................................9113.0048.00-3.00------------------
..........................AACCAAATGTATGGAACTAACAAGACG........................................................................................................................................273.000.00---3.00----------------
.......TATGGATGTCCTAAGAGAGAACCAA.............................................................................................................................................................2513.003.00-----3.00--------------
................................ATGTATGGAACTAACAAGATGG.......................................................................................................................................2212.002.00--2.00-----------------
..................................GTATGGAACTAACAAG...........................................................................................................................................1612.002.00------------1.00-----1.00-
................................ATGTATGGAACTAACAAG...........................................................................................................................................1812.002.00--1.00------------1.00----
...........................................................................................................................................................................TCTGTTCAAGAACTAGCA182.000.00----1.00------------1.00--
.AACATGTATGGATGTCCTAAGAGAGAACCA..............................................................................................................................................................3012.002.00-------2.00------------
................................ATGTATGGAACTAACAAGGTAAGC.....................................................................................................................................2411.001.00--------1.00-----------
...........................................................................................................................................................................TCTGTTCAAGAACTAGC.171.000.00-----------1.00--------
...........................................................................................................................................................................TCTGTTCAAGAACTAGCAA191.000.00----1.00---------------
.....................................................................................................................TTGGATATGAATGTCTTTGTAGAA................................................241.000.00--1.00-----------------
.AACATGTATGGATGTCCTAAGAG.....................................................................................................................................................................2311.001.00---------1.00----------
..................................GTATGGAACTAACAAGATGG.......................................................................................................................................2011.002.00--1.00-----------------
..................................................GTAAGCAGCAGCCTTCTCTGTTCTTTTGTATAGTTTCATTTGTGTGCATTTTTTTTGCGTAACACATTTGGATATGAATGTCTTTGTAGAT................................................9111.001.00-1.00------------------
........................................................................................TTTGTGTGCATTTTTGACC..................................................................................191.000.00----1.00---------------
...................................................TAAGCAGCAGCCTTCTCTGTTCTTTTGTATAGTTTCATTTGTGTGCATTTTTTTTGCGTAACACATTTGGATATGAATGTCTTTGTAG..................................................8811.001.00-1.00------------------
......................................................................................................................TGGATATGAATGTCTTTGTAG..................................................2111.001.001.00-------------------
.............................................................................................GTGCATTTTTTTTGCCTTA.............................................................................191.000.00----------1.00---------

Antisense strand
GAACATGTATGGATGTCCTAAGAGAGAACCAAATGTATGGAACTAACAAGGTAAGCAGCAGCCTTCTCTGTTCTTTTGTATAGTTTCATTTGTGTGCATTTTTTTTGCGTAACACATTTGGATATGAATGTCTTTGTAGATGGTTCCATATCGAGATTCAAAGTTAACCCATCTGTTCAAGAACTACTT
....................................................................................((((..((((((((.......)))...)))))..)))).......((((....))))................................................
...................................................................................84...........................................................145..........................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR029124(GSM416753)
HeLa. (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...............................................................TTCTCTGTTCTTTTGTAGT........................................................................................................... 191.000.00-------------1.00------
............................................................CTATACAAAAGAACAGAGAAGGC.......................................................................................................... 2311.001.00----------------1.00---
.......................................................CAGCAGCCTTCTCTGAAC.................................................................................................................... 181.000.00--------------1.00-----
.........................................................................................................................ATATGAATGTCTTTGTAAT................................................. 191.000.00-------------------1.00