ID: uc010bfn.2_intron_7_0_chr15_56471502_r.5p
GENE: (1)
chr15:56535123-56535372-


(2)
AGO2.ip
(4)
B-CELL
(7)
BRAIN
(3)
BREAST
(15)
CELL-LINE
(14)
CERVIX
(1)
HEART
(7)
LIVER
(4)
OTHER
(15)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
CCAGGGACAGAGGCCAGCGCGCTGCAACACAAGATCAAGAACTCCATCTGGTAAGAGGATCCTCCATCGCTCGCGTGAAAAAGCCCAGGCACATTTCTGCTGCAAAGTGGGTGGGGGGCGGCGGGCGGGGGGAGCGGAGGAGGAGGCTGATGCATTCATTGAATGTGGCTTTCCCCAGTCGGGTGCACATTTGTAGGATCTCTGGAGGTGTGCGGACTTTGCATCAATCAGCCCCTGTCTTCTTAGCTAA
.....................................................................................................................(((...(((((((..(((...((......))...((((((...)))))).)))..)))).)))...)))................................................................
................................................................................................................113....................................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040007(GSM532892)
G601T. (cervix)
GSM532876(GSM532876)
G547T. (cervix)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
GSM956925PAZD5GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM532884(GSM532884)
G871T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR040014(GSM532899)
G623N. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR040024(GSM532909)
G613N. (cervix)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
.....................................................................................................................GCGGCGGGCGGGGGGGGGG..................................................................................................................19019.003.004.001.003.00---2.00-1.00--1.00-----1.00---1.00----------1.00---1.00-1.00-------1.00------------------1.00------
....................................................................................................................GGCGGCGGGCGGGGGGGGGG..................................................................................................................206.000.001.00---------------1.00-1.00-------1.001.00--------------------1.00-----------------------
.................................................................................................................................................................................GTCGGGTGCACATTTGTAGGA....................................................2115.005.00---5.00--------------------------------------------------------------------
.....................................................................................................................GCGGCGGGCGGGGGG......................................................................................................................1503.003.00-----1.00------2.00-----------------------------------------------------------
.....................................................................................................................GCGGCGGGCGGGGGGGCGG..................................................................................................................1903.003.001.00----------1.00------------------------------1.00-----------------------------
.....................................................................................................................GCGGCGGGCGGGGGGGGGC..................................................................................................................1903.003.00--1.00------------1.00------------------------------------------1.00-------------
...............................................................................................................TGGGGGGCGGCGGGCGTGA........................................................................................................................192.000.00------------------------------1.00------------------------------------1.00----
....................................................................................................................GGCGGCGGGCGGGGGGGCGG..................................................................................................................202.000.00-1.00---------------------------------------------1.00------------------------
.....................................................................................................................GCGGCGGGCGGGGGGGGG...................................................................................................................1802.003.00----------1.00-----------------1.00-------------------------------------------
....................................................................................................................GGCGGCGGGCGGGGGGGGG...................................................................................................................192.000.00-1.00---------------1.00------------------------------------------------------
................................................................................................................................................................................................GTAGGATCTCTGGAGGTG........................................1812.002.00----------1.00-----------------------------------------------------1.00-------
....................................................................................................................GGCGGCGGGCGGGGGGGGGC..................................................................................................................202.000.00--------1.00------------------------------------------1.00--------------------
.............................................................................................................................................................................CCCAGTCGGGTGCACATTTG.........................................................2011.001.00--------------------------------------------------1.00---------------------
..................................................................................................................................................................ATGTGGCTTTCCCCAGTCGGG...................................................................2111.001.00-------------------------------1.00----------------------------------------
......................................................................................................................................CGGAGGAGGAGGCTGGTGA.................................................................................................191.000.00------------------1.00-----------------------------------------------------
...............................................................................................................TGGGGGGCGGCGGGCGAGT........................................................................................................................191.000.00---------------------------------------------------------------1.00--------
....................................................................................................................GGCGGCGGGCGGGGGGGCG...................................................................................................................191.000.00-1.00----------------------------------------------------------------------
...............................................................................................................................GGGGGAGCGGAGGAGGAGGCTGA....................................................................................................2311.001.00-------------------------------------------1.00----------------------------
........AGAGGCCAGCGCGCTT..................................................................................................................................................................................................................................161.000.00------------------------------------------------------------------1.00-----
.....................................................................................................................GCGGCGGGCGGGGGGAGGGGA................................................................................................................211.000.00--1.00---------------------------------------------------------------------
......................................................................................................................................CGGAGGAGGAGGCTGCGGA.................................................................................................191.000.00-------------------------------------------------------1.00----------------
..........................................................................................................................................GGAGGAGGCTGATGCATTCATTG.........................................................................................2311.001.00-----------------------------------------------------------1.00------------
....................................................................................................................GGCGGCGGGCGGGGGGGGTA..................................................................................................................201.000.00----------------------1.00-------------------------------------------------
...............................................................................................................TGGGGGGCGGCGGGCGGGGGTCTA...................................................................................................................241.000.00---------------1.00--------------------------------------------------------
.....................................................................................................................................................................TGGCTTTCCCCAGTCGGGTGCACA.............................................................2411.001.00----------------------------------------------------1.00-------------------
.....................................................................................................................GCGGCGGGCGGGGGGGGTG..................................................................................................................1901.003.00-------------1.00----------------------------------------------------------
........................................................................................................................................................................................GCACATTTGTAGGATCTCTGGAGGTG........................................2611.001.00------------------------------------------------------1.00-----------------
.................................ATCAAGAACTCCATCTGCAA.....................................................................................................................................................................................................201.000.00----------------1.00-------------------------------------------------------
..............................AAGATCAAGAACTCCATCT.........................................................................................................................................................................................................1911.001.00--------------------------------------------------------------1.00---------
....................GCTGCAACACAAGATCAAGAACTCCA............................................................................................................................................................................................................2611.001.001.00-----------------------------------------------------------------------
.......................GCAACACAAGATCAAGAACTCCATC..........................................................................................................................................................................................................2511.001.00--------------------------------------------------------1.00---------------
.............................CAAGATCAAGAACTCCATCTGC.......................................................................................................................................................................................................221.000.00---------------------------------1.00--------------------------------------
..........................................................................................................................................................................................................TGGAGGTGTGCGGACTTT..............................1811.001.00---------------------------------------------1.00--------------------------
.....................................................................................................................................................................................GGTGCACATTTGTAGGATCTCTG..............................................2311.001.00-----------------------1.00------------------------------------------------
.................................................................................................................................................................................................................GTGCGGACTTTGCATCAAT......................1911.001.00------------------------------------------------------------1.00-----------
.....................................................................................................................GCGGCGGGCGGGGGGAGAGGG................................................................................................................211.000.00-----1.00------------------------------------------------------------------
.....................................................................................................................GCGGCGGGCGGGGGGGCGC..................................................................................................................1901.003.001.00-----------------------------------------------------------------------
............................................................................................................................GCGGGGGGAGCGGAGGGGCG..........................................................................................................201.000.00-1.00----------------------------------------------------------------------
....................................................................................................................................................................................................GATCTCTGGAGGTGTGCG....................................1811.001.00-------------1.00----------------------------------------------------------
....................................................................................................................................................................................................................CGGACTTTGCATCAATCAGCCCCTGTCTTCTT......3211.001.00-----------------------------------------------------1.00------------------
................................................................................................................GGGGGGCGGCGGGCGTG.........................................................................................................................171.000.00-------1.00----------------------------------------------------------------
........................................................................................................................................................................CTTTCCCCAGTCGGGTGCA...............................................................1911.001.00----------------------------------------1.00-------------------------------
.................................................................................................................................................................................GTCGGGTGCACATTTGTAGG.....................................................2011.001.00------------------------1.00-----------------------------------------------
..............................................................................................................................GGGGGGAGCGGAGGAGGGGCC.......................................................................................................211.000.00---------------------------------------------------------1.00--------------
.......................................................................................................................................................................................................CTCTGGAGGTGTGCGGACTTTGCA...........................2411.001.00-----------------------------------------1.00------------------------------
..................................................................................................................................................................................................AGGATCTCTGGAGGTGTGCGG...................................2111.001.00----1.00-------------------------------------------------------------------
.................................................................................................................GGGGGCGGCGGGCGGGAA.......................................................................................................................181.000.00-------1.00----------------------------------------------------------------
.............................................................................................................................CGGGGGGAGCGGAGGAGGAGGC.......................................................................................................2211.001.00--------------------------------------------1.00---------------------------
....................................................................................................................GGCGGCGGGCGGGGGGAGGGTT................................................................................................................221.000.001.00-----------------------------------------------------------------------
...............................................................................................................TGGGGGGCGGCGGGCGACT........................................................................................................................191.000.00-----------------------------1.00------------------------------------------
........................CAACACAAGATCAAGAACTCCATCTG........................................................................................................................................................................................................2611.001.00----------------------------------1.00-------------------------------------
.....................................................................................................................GCGGCGGGCGGGGGGAGCGGGG...............................................................................................................221.000.00-----1.00------------------------------------------------------------------
........................................................................................................................................................................................GCACATTTGTAGGATCTCTGGAG...........................................2311.001.00-------------------------1.00----------------------------------------------
........................CAACACAAGATCAAGAACTCC.............................................................................................................................................................................................................2111.001.00-------------------------------------------------------------1.00----------
...............................................................................................................................................AGGCTGATGCATTCATTGAA.......................................................................................2011.001.00--------------------1.00---------------------------------------------------
................................................................................................................GGGGGGCGGCGGGCGGGGG.......................................................................................................................1940.500.50-0.50----------------------------------------------------------------------
......................................................................................................................CGGCGGGCGGGGGGAGC...................................................................................................................1730.330.33---------------------------------------------------------------------0.33--
.................................................................................................................GGGGGCGGCGGGCGGGGGGA.....................................................................................................................2030.330.33-------------------0.33----------------------------------------------------
...................................................................................................................GGGCGGCGGGCGGGGGGA.....................................................................................................................1840.250.25------0.25-----------------------------------------------------------------
.................................................................................................................GGGGGCGGCGGGCGGGGG.......................................................................................................................1880.250.25-------0.12--------------------------------------------------------------0.12-
......................................................................................................................CGGCGGGCGGGGGGAG....................................................................................................................1690.110.11-----------------------------------------------------------------------0.11

Antisense strand
CCAGGGACAGAGGCCAGCGCGCTGCAACACAAGATCAAGAACTCCATCTGGTAAGAGGATCCTCCATCGCTCGCGTGAAAAAGCCCAGGCACATTTCTGCTGCAAAGTGGGTGGGGGGCGGCGGGCGGGGGGAGCGGAGGAGGAGGCTGATGCATTCATTGAATGTGGCTTTCCCCAGTCGGGTGCACATTTGTAGGATCTCTGGAGGTGTGCGGACTTTGCATCAATCAGCCCCTGTCTTCTTAGCTAA
.....................................................................................................................(((...(((((((..(((...((......))...((((((...)))))).)))..)))).)))...)))................................................................
................................................................................................................113....................................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040007(GSM532892)
G601T. (cervix)
GSM532876(GSM532876)
G547T. (cervix)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
GSM956925PAZD5GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM532884(GSM532884)
G871T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR040014(GSM532899)
G623N. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR040024(GSM532909)
G613N. (cervix)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
..............................................................................................................................GGGGGGAGCGGAGGAGGTCG........................................................................................................ 204.000.00---------1.00----2.00------------------------1.00--------------------------------
..........................................................CACGCGAGCGATGGAGGAT............................................................................................................................................................................. 1912.002.00----2.00-------------------------------------------------------------------
..............................................................................................................................GGGGGGAGCGGAGGATCGA......................................................................................................... 191.000.00---------1.00--------------------------------------------------------------
............................................................................................................GGGTGGGGGGCGGCGGGGGGC......................................................................................................................... 211.000.00-------------------1.00----------------------------------------------------
..................CTTGATCTTGTGTTGCAGCGC................................................................................................................................................................................................................... 2111.001.00-------------------------------------------------1.00----------------------
.............................TTACCAGATGGAGTTCTTGATCTTG.................................................................................................................................................................................................... 2511.001.00-----------------------------------1.00------------------------------------
.............................................................................................................................................................................................................................GACAGGGGCTGATTGATG........... 1811.001.00-------------------------------------1.00----------------------------------
........................................................................................................................CGCTCCCCCCGCCCGC.................................................................................................................. 1620.500.50--------------------------------------------------------------------0.50---