ID: uc010bff.2_intron_29_0_chr15_52545655_r.5p
GENE: (11)
chr15:52548636-52548885-


(1)
AGO2.ip 		(1)
BRAIN 		(4)
BREAST 		(11)
CELL-LINE 		(2)
CERVIX 		(2)
OTHER 		(13)
SKIN

Sense strand
AATTTTGCATCAATTACGCTAATGAAAAACTGCAACAACAGTTTAACATGGTAGGTGACCTTTCTGCCTTCTTGACTAGTTCTCAGCCGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTTCGTGGAAAGAGGCATTCTTCTTTCTTGAGGTTGCAAATTTTTATGCAAGGAGCCTCACGCTGGGTCACTGCACCACCTTGTGGCCAAATCTTGAAATCACACCCTCTCATCTATTTCATCTTT
.................................................................................((((((((((((((((((((......)))))))))))))).........(((((((((....)))))))))((((((((((........))))....)))))).))))))...........................................................
.................................................................................82..............................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532876(GSM532876)
G547T. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
........................................................................................GCGCGCGCGCGCGTG...................................................................................................................................................15053.0053.00-15.0016.008.009.005.00------------------------------
......................................................................................CCGCGCGCGCGCGCGTG...................................................................................................................................................17318.0018.0018.00-----------------------------------
........................................................................................GCGCGCGCGCGCGTGTG.................................................................................................................................................17010.0010.00-3.002.003.001.001.00------------------------------
.......................................................................................CGCGCGCGCGCGCGTG...................................................................................................................................................1608.008.00-5.002.00-1.00-------------------------------
......................................................................................CCGCGCGCGCGCGCGTGTG.................................................................................................................................................1937.007.007.00-----------------------------------
......................................................................................CCGCGCGCGCGCGCGGGA..................................................................................................................................................185.000.00------------2.00---2.00--1.00----------------
.......................................................................................CGCGCGCGCGCGCGTGTG.................................................................................................................................................1804.004.00-2.001.001.00--------------------------------
.........................................................................................CGCGCGCGCGCGTGTG.................................................................................................................................................1602.002.00-1.00-1.00--------------------------------
.......................................................................................CGCGCGCGCGCGCGTGGTG................................................................................................................................................1902.008.00---------------------1.00----1.00---------
......................................................................................CCGCGCGCGCGCGCGTGT..................................................................................................................................................1831.331.331.33-----------------------------------
............................................................................................................................................................................CAAGGAGCCTCACGCCTA............................................................181.000.00----------------------1.00-------------
...................................................................................................CGTGTGTGTGTGTGTGTGTGTGTCCGT............................................................................................................................271.000.00-------------1.00----------------------
.......................................................................................CGCGCGCGCGCGCGTGTCGG...............................................................................................................................................201.000.00---------------1.00--------------------
......................................................................................CCGCGCGCGCGCGCGTGCGGT...............................................................................................................................................2131.0018.001.00-----------------------------------
.......................................................................................CGCGCGCGCGCGCGTGAT.................................................................................................................................................1801.008.00----------1.00-------------------------
....................................AACAGTTTAACATGGGTC....................................................................................................................................................................................................181.000.00---------------------------------1.00--
........................................................................................GCGCGCGCGCGCGTGTTGT...............................................................................................................................................191.000.00------1.00-----------------------------
......................................................................................CCGCGCGCGCGCGCGTGGCC................................................................................................................................................2031.0018.001.00-----------------------------------
........................................................................................GCGCGCGCGCGCGTGTGTGTGCG...........................................................................................................................................231.000.00----------------------------1.00-------
.........................................................................................CGCGCGCGCGCGTGTGAT...............................................................................................................................................1801.002.00-------------1.00----------------------
.......................................................................................CGCGCGCGCGCGCGTGGGGT...............................................................................................................................................2001.008.00------------------1.00-----------------
..........................................................................................GCGCGCGCGCGTGTGTGTGTCGG.........................................................................................................................................231.000.00---------------------------1.00--------
..........................................................................................GCGCGCGCGCGTGTGTCGA.............................................................................................................................................191.000.00------1.00-----------------------------
.........................................................................................CGCGCGCGCGCGTGTGTGTGTGTGGGGC.....................................................................................................................................281.000.00---------1.00--------------------------
.......................................................................................CGCGCGCGCGCGCGTGGGG................................................................................................................................................1901.008.00------------------------------1.00-----
...........................................................................................................TGTGTGTGTGTGTGTGTGTTCGTCTC.....................................................................................................................261.000.00-------------------------1.00----------
........................................................................................GCGCGCGCGCGCGTGTGTGTGTGTG.........................................................................................................................................2501.001.00--1.00---------------------------------
..........................................................................................GCGCGCGCGCGTGTGTGGCG............................................................................................................................................201.000.00----------1.00-------------------------
........................................................................................GCGCGCGCGCGCGTGTCGG...............................................................................................................................................191.000.00---------------1.00--------------------
......................................................................................CCGCGCGCGCGCGCGTGG..................................................................................................................................................1831.0018.00------------------------1.00-----------
.........................................................................................CGCGCGCGCGCGTGTTGTG..............................................................................................................................................191.000.00-------1.00----------------------------
........................................................................................GCGCGCGCGCGCGTGTCG................................................................................................................................................181.000.00-----------1.00------------------------
..........................................................................................GCGCGCGCGCGTGTGTCGT.............................................................................................................................................191.000.00------1.00-----------------------------
........................................................................................................................................................TGAGGTTGCAAATTTTATAG..............................................................................201.000.00--------1.00---------------------------
.....................................................................................GCCGCGCGCGCGCGCGCGAG.................................................................................................................................................201.000.00-------1.00----------------------------
.......................................................................................CGCGCGCGCGCGCGTGTGTTG..............................................................................................................................................211.000.00-----------1.00------------------------
.......................................................................................CGCGCGCGCGCGCGT....................................................................................................................................................1501.001.00-1.00----------------------------------
...................................................................................................................................................................................................TGCACCACCTTGTGGGG......................................171.000.00--------------------------------1.00---
............................................................................................GCGCGCGCGTGTGTGTGTGTG.........................................................................................................................................2101.001.00---1.00--------------------------------
...........................................................................................................TGTGTGTGTGTGTGTGTGTTCGTAGTC....................................................................................................................271.000.00---------1.00--------------------------
........................................................................................GCGCGCGCGCGCGTGTGAAA..............................................................................................................................................2001.0010.00--------------------1.00---------------
...........................................................................................CGCGCGCGCGTGTGTTGGG............................................................................................................................................191.000.00-------------------------------1.00----
.....................................................................................GCCGCGCGCGCGCGCGCGCG.................................................................................................................................................201.000.00-----------------------1.00------------
......................................................................................CCGCGCGCGCGCGCGT....................................................................................................................................................1660.330.330.33-----------------------------------

Antisense strand
AATTTTGCATCAATTACGCTAATGAAAAACTGCAACAACAGTTTAACATGGTAGGTGACCTTTCTGCCTTCTTGACTAGTTCTCAGCCGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTTCGTGGAAAGAGGCATTCTTCTTTCTTGAGGTTGCAAATTTTTATGCAAGGAGCCTCACGCTGGGTCACTGCACCACCTTGTGGCCAAATCTTGAAATCACACCCTCTCATCTATTTCATCTTT
.................................................................................((((((((((((((((((((......)))))))))))))).........(((((((((....)))))))))((((((((((........))))....)))))).))))))...........................................................
.................................................................................82..............................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532876(GSM532876)
G547T. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
.....................................................................................GCCGCGCGCGCGCGCGCCG.................................................................................................................................................. 192.000.00-----------------1.00----------------1.00-
.....................................................................................GCCGCGCGCGCGCGCGGCC.................................................................................................................................................. 192.000.00--------------2.00---------------------
......................................................................................CCGCGCGCGCGCGCGTCT.................................................................................................................................................. 181.000.00-------1.00----------------------------
.................................................................................CTCAGCCGCGCGCGCCC........................................................................................................................................................ 171.000.00-----------------------------1.00------
...................................................................................CAGCCGCGCGCGCGCGA...................................................................................................................................................... 171.000.00-----------------------------------1.00
..........................................................................................................................................GCATTCTTCTTTCTTGATAG............................................................................................ 201.000.00--------1.00---------------------------
.................................................................................................CGCGTGTGTGTGTGTGTGTGTGTGTGTACC........................................................................................................................... 301.000.00---------1.00--------------------------
..............................................................................................ACACACACACACACGCGCGC........................................................................................................................................ 2001.001.00--1.00---------------------------------
...............................................................................................ACACACACACACGCGCG.......................................................................................................................................... 1701.001.00----1.00-------------------------------
..............TACGCTAATGAAAAATTG.......................................................................................................................................................................................................................... 181.000.00--------1.00---------------------------
......................................................................................CACGCGCGCGCGCGCGG................................................................................................................................................... 1730.330.330.33-----------------------------------