ID: uc010bez.1_intron_1_0_chr15_51675651_f
GENE: GLDN(2)
chr15:51675601-51676031+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(24)
B-CELL 		(4)
BRAIN 		(7)
BREAST 		(26)
CELL-LINE 		(6)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(1)
KIDNEY 		(3)
LIVER 		(3)
OTHER 		(19)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GGTTTCTCAACTAAATTTTTTTTCCGTTGTAGGACCTTCTGGACCACCAGGTAAGAGCCCATGGATTTTCTAGTTCAAGGGGAGGCTGTGGGTGGCCAGACCCTAGGATCTCCCTGTTGGGACAGATGCGGGGAGGGCAAGAGCCTGGAGGCAGTCCTGGCTGTGTGTCTCCTTCTTTGTGCCCCTCACCTGAGGCTCTGCCATCACCATCCCCCCACTTGGCACTGCTTCAGCCAGAGAAGGAAGGAAAGAAGTGGGAAAGGATGTGGAAAAGGAATTGATGCCTGCTCAGTTTCACTGGTAAAGGAAATGACAGTAACTTCAGTGAATAATTTTTTTTTTTTTTTTGGTTAATGTCCCTGTTTCTGTGTTTTGATGCAGGACCTCCGGGAGCCGGCGGGTTGCCAGGACACAACGGATTGGATGGACAG
...........................................................................................................................................................................................................((..(((((.(((((((....((.((((.......))))..)).....)))))))...)))))..)).................................................................................................................................................................
.......................................................................................................................................................................................................200........................................................................275..........................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189784SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR343337SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR343336SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR189787SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR343335SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR343334SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189783SRR553574(SRX182780)
source: Heart. (Heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR040032(GSM532917)
G603N. (cervix)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM532885(GSM532885)
G850N. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAG................................................................................................................................................................20127.0016.002.001.006.004.001.001.00-------3.00--2.00-------------1.001.00--------1.00------2.00---------------1.00---------------------1.00--------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGAG................................................................................................................................................................19120.0010.002.00-----9.00-3.00------1.00---3.00-------------1.00----------------------1.00-------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAGT...............................................................................................................................................................21120.0016.001.004.004.00--------1.00-------2.00--2.00--------1.00-1.00----1.00-1.00----------------1.00-----------------1.00------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAA................................................................................................................................................................20118.0018.001.00-------4.00-3.00-------3.00-2.00------2.00--1.001.00-------1.00------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGA.................................................................................................................................................................19116.0016.003.00-------2.00----------2.00----1.001.00-------------1.00-----1.001.00-1.001.00-1.00--------1.00---------------------------------------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGAAATCCC...........................................................................................................................................................23114.003.0010.002.00-1.00---1.00--------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAAA...............................................................................................................................................................21114.0014.003.00---4.004.00------------------1.002.00--------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................GAAAGGATGTGGAAATCCC...........................................................................................................................................................1914.000.007.00--3.00---3.00--------------------------------------------------------------------1.00-----------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGAGTT..............................................................................................................................................................21113.0010.00-7.00----4.00----2.00----------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................GGGAAAGGATGTGGAAATCCC...........................................................................................................................................................2113.000.0012.00------------------------------------------------------------------------------1.00--------------------------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGAAATCCC...........................................................................................................................................................22212.502.004.50--3.00---1.00-2.50-----0.50----------------------------------0.50----------------------------------------0.50--------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGG..................................................................................................................................................................18111.0011.00----------2.00------8.00--1.00-------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGA.................................................................................................................................................................18110.0010.005.00------2.00--------------1.00---1.00------------------1.00------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGGA................................................................................................................................................................20110.0011.00--3.00-1.001.00-----1.00---------3.00----------------------------------------1.00-------------------------------------------
................................................................................................................................................................................................................................................................GGAAAGGATGTGGAAATCCC...........................................................................................................................................................2010.000.005.00------1.00-------3.00------------1.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGA..................................................................................................................................................................1818.004.00----2.002.00-----------------1.00-----2.00-----------------------------------------------------1.00----------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGAAATC.............................................................................................................................................................2217.003.006.00----------------------1.00----------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGAGT...............................................................................................................................................................2017.0010.001.00----------2.00-2.00------------------------------------1.00-------------1.00-----------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAAATCCC...........................................................................................................................................................2517.0014.001.00--------5.00------1.00-----------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGAAAT..............................................................................................................................................................2116.003.004.00---1.001.00----------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGAGGA...............................................................................................................................................................2116.004.00--3.00-------3.00-----------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAAGCG.............................................................................................................................................................2316.0018.00----3.003.00----------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGAAATCC............................................................................................................................................................2215.003.003.00--1.00---1.00--------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGAGTTG.............................................................................................................................................................2215.0010.00-4.00-------1.00------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGAA................................................................................................................................................................1915.005.002.00---------------------------1.00--------2.00--------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAGTT..............................................................................................................................................................2215.0016.001.001.00------1.001.00--------------------1.00---------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGGAT...............................................................................................................................................................2115.0011.00-------------3.00-------2.00------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGG.................................................................................................................................................................1915.0011.002.00---1.001.00--------------------1.00-------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGGAA...............................................................................................................................................................2115.0011.002.00------------1.00----1.00-----------------------------------------------1.00---------------------------------------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGGGTC..............................................................................................................................................................195.000.00--------------5.00-------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAGTTG.............................................................................................................................................................2315.0016.00-1.00----------------------1.00--------1.00---------------------1.00-------------------------------1.00------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAAG...............................................................................................................................................................2114.0018.00----1.001.00------------1.00-1.00-------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGGAC...............................................................................................................................................................194.000.00---2.00---2.00--------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAAATC.............................................................................................................................................................2314.0014.00----------2.00---------1.00------1.00------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGAAATCCC...........................................................................................................................................................2414.003.004.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTG...................................................................................................................................................................1714.004.00-------2.00--------------2.00-----------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGAAATCC............................................................................................................................................................2313.003.002.00--------1.00------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGAAGC..............................................................................................................................................................2113.005.00--------------3.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGAGT...............................................................................................................................................................1943.001.750.25-----------------------0.25-----------2.00-------------------------------------------------------------0.25--0.25----
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGAAA...............................................................................................................................................................1913.003.002.00---------------------------------------------------------------------------------1.00-----------------------
...............................................................................................................................................................................................................................................................GGGAAAGGATGTGGAAATCC............................................................................................................................................................203.000.00---1.00-------------------------------------2.00----------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGGGCC..............................................................................................................................................................2213.0011.00--------------------------------3.00-------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGAGG................................................................................................................................................................2013.004.00----1.001.00--1.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAAGC..............................................................................................................................................................2213.0018.00-----------------------2.00-----1.00----------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGAAA...............................................................................................................................................................2013.003.002.00-----------------------1.00---------------------------------------------------------------------------------
............................................................................................................................................................................................................CACCATCCCCCCACTACC.................................................................................................................................................................................................................183.000.00---------------2.00------------1.00-----------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTAGTA................................................................................................................................................................193.000.003.00---------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGGACT..............................................................................................................................................................193.000.002.00-------------------------------------1.00-------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAAATCC............................................................................................................................................................2412.0014.002.00---------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGAAATC.............................................................................................................................................................2112.003.002.00---------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGAAAT..............................................................................................................................................................2012.003.002.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAAAT..............................................................................................................................................................2212.0014.00--1.00------------------------1.00------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................GGAAAGGATGTGGAAATCC............................................................................................................................................................192.000.002.00---------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................AATTTTTTTTTTTTTTTTGGGGC..............................................................................232.000.00------------2.00---------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAGTC..............................................................................................................................................................2212.0016.00-------------------------1.00-----------------1.00--------------------------------------------------------------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGAAA...............................................................................................................................................................1822.002.000.50-----------------------------------------------------------------------------------------0.50-0.500.50------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGGAC...............................................................................................................................................................2112.0011.00------------------1.00-------1.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGGACT..............................................................................................................................................................202.000.002.00---------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGGA................................................................................................................................................................1922.000.50----0.500.50---0.50------------------------------------------------------------------------------0.50-----------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGA.................................................................................................................................................................1741.751.75---0.50---0.75-------------------------------------------0.25-----------------------------------------------0.25------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGAAATCC............................................................................................................................................................2121.502.001.00----------0.50----------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGAGTTG.............................................................................................................................................................2141.251.750.250.50---------0.50----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGAGT...............................................................................................................................................................1891.110.11------0.560.22-------0.11-------------------------------------0.11-------------------------------------------0.11--------
................................................................................................................................................................................................................................................................GGAAAGGATGTGGAAATCCT...........................................................................................................................................................201.000.001.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGC..................................................................................................................................................................1811.004.001.00---------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTGGTTAACG...........................................................................241.000.00----------------1.00-----------------------------------------------------------------------------------------
..........CTAAATTTTTTTTCCATC...................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00----------------------------------1.00-----------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGAGTC..............................................................................................................................................................2111.0010.001.00---------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................AATAATTTTTTTTTTTTTAATG..................................................................................221.000.00--------------------------------------------------------------------------------------1.00-------------------
.................................................................................................................................................................................................................................................................GAAAGGATGTGGAAACCC............................................................................................................................................................181.000.00-----------------------------------1.00----------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................AATTTTTTTTTTTTTTTTGGGGTG.............................................................................241.000.00----------------1.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAGC...............................................................................................................................................................2111.0016.00--------------------------------------------------------------------------1.00-------------------------------
...............................................................................................................................................................................................................................................................GGGAAAGGATGTGGAAAACCCA..........................................................................................................................................................221.000.001.00---------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................TCTCCTTCTTTGTGCCCCTCAC..................................................................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------1.00----------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................GTGTTTTGATGCAGGGTA..............................................181.000.00--------------------------1.00-------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTGGGGGC.............................................................................231.000.00------------1.00---------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................AATTTTTTTTTTTTTTTTGGGC...............................................................................221.000.00------------1.00---------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................AATTTTTTTTTTTTTTTTGGCTGA.............................................................................241.000.00----------------------------------1.00-----------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGTGA................................................................................................................................................................2011.004.00--------------------1.00-------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGAAG...............................................................................................................................................................2011.005.00--------1.00-------------------------------------------------------------------------------------------------
.............AATTTTTTTTCCGTTCCC................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00----------------------------------1.00-----------------------------------------------------------------------
..........................................................................................................................................................................................................................................CAGAGAAGGAAGGAAAGAAGCG...............................................................................................................................................................................221.000.00----------------------------------------------------------------------1.00-----------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAGA...............................................................................................................................................................2111.0016.00-----------1.00----------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAAATCCA...........................................................................................................................................................2511.0014.00---------1.00------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGAAATCAC...........................................................................................................................................................2311.003.00-1.00--------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGCAA................................................................................................................................................................181.000.001.00---------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGAAGCGC............................................................................................................................................................2311.005.00------------------------------------------------1.00---------------------------------------------------------
................................................................................................................................................................................................................................................................GGAAAGGATGTGGAAATCCA...........................................................................................................................................................201.000.001.00---------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................GAAAGGATGTGGAAATCTC...........................................................................................................................................................191.000.00----------1.00-----------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGGAAT..............................................................................................................................................................201.000.00-----------1.00----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTGGTTAATGCGGC.......................................................................261.000.00------------1.00---------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGGATTGGATGGACA.1511.001.00-----------------------------------------------------------1.00----------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................TAATTTTTTTTTTTTTTTTGGGC...............................................................................231.000.00------------1.00---------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGAAATCCT...........................................................................................................................................................2221.002.001.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGCGTT..............................................................................................................................................................2211.0011.00-1.00--------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGGAAA..............................................................................................................................................................2211.0011.00--------------------------------------------------------------------------------1.00-------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGGACCTCCGGGAGCCTC..................................181.000.00----------------------------------------------------1.00-----------------------------------------------------
.................................................................................................................................................................................................................................................................GAAAGGATGTGGAAACTC............................................................................................................................................................181.000.00-----------------------------------1.00----------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGAGA................................................................................................................................................................2011.004.00-------------------------------------------1.00--------------------------------------------------------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGGGTT..............................................................................................................................................................201.000.00--------1.00-------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................AATTTTTTTTTTTTTTTTGGTATTC............................................................................251.000.00------------1.00---------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................AATTTTTTTTTTTTTTTTGGTTGAG............................................................................251.000.00------------1.00---------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGGCA...............................................................................................................................................................2111.0011.00------------------1.00---------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGGGAT..............................................................................................................................................................2211.0011.001.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGGGA...............................................................................................................................................................2111.0011.001.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTGGGGCC.............................................................................231.000.00------------1.00---------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................AATTTTTTTTTTTTTTTTGGTATC.............................................................................241.000.00----------------1.00-----------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................TAATTTTTTTTTTTTTTTTGGGGT..............................................................................241.000.00----------------1.00-----------------------------------------------------------------------------------------
................................................................................GGAGGCTGTGGGTGGTATC............................................................................................................................................................................................................................................................................................................................................191.000.00-------------------------------------------------------------1.00--------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................AATTTTTTTTTTTTTTTTGGCGCC.............................................................................241.000.00------------1.00---------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAAATTC............................................................................................................................................................2411.0014.001.00---------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................AATAATTTTTTTTTTTTTTTCTTG................................................................................241.000.00---------------------------------------------------------------------------------1.00------------------------
.....................................................................................................................TGGGACAGATGCGGGGAGGGC.....................................................................................................................................................................................................................................................................................................2111.001.00-----------------------------------------------------------------1.00----------------------------------------
......................................................................................................................................................GCAGTCCTGGCTGTGTGGTGA....................................................................................................................................................................................................................................................................211.000.00-----------------------------------------------------------------------------1.00----------------------------
.............................................................................................................................................................................................................................................................................................................................................................GTTAATGTCCCTGTTCG.................................................................171.000.00------------------------------------------------------------------------1.00---------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGGACT..............................................................................................................................................................2121.000.500.50--------------0.50------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................GTTAATGTCCCTGTTCTGG...............................................................191.000.00------------------------------------------------------1.00---------------------------------------------------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGAAAT..............................................................................................................................................................1921.002.000.50----------------------0.50----------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGGACCTCCGGGAGCCGGC.................................1911.001.00-----------------------------------------------------1.00----------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGAGCT..............................................................................................................................................................2111.0010.00------1.00---------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................GGGAAAGGATGTGGAGTTG.............................................................................................................................................................191.000.00---------------1.00------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTGGAGGTG.............................................................................................................................................................2311.0016.00-------------------------------------------------------------------------1.00--------------------------------
...........................................................................................................................................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTGGTTAGGAG..........................................................................261.000.00----------------1.00-----------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGAGTTG.............................................................................................................................................................2090.890.110.11-------------0.67-------------------------------------------------------------------------0.11-----------------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGAA................................................................................................................................................................1730.670.670.33---------------------------------------------------------------------------------------------0.33-----------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGCAGT...............................................................................................................................................................2070.570.29---0.43---0.14--------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGAGTCG.............................................................................................................................................................2090.560.110.22--0.22---0.11--------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGGGTT..............................................................................................................................................................2120.500.50------0.50---------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGAA................................................................................................................................................................1820.500.50-----------------------------------------------------------------------------------------0.50----------------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGAAATCTC...........................................................................................................................................................2220.502.00---------0.50------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGAAACCC............................................................................................................................................................2120.502.000.50---------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGGGCA...............................................................................................................................................................2020.500.500.50---------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGG..................................................................................................................................................................1720.500.50-------------------------------------------------0.50--------------------------------------------------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGAAGCGC............................................................................................................................................................2220.500.50------------------0.50---------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGAATC..............................................................................................................................................................1930.330.67-----------------------------------------------------------------------------------------------0.33----------
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGTAGG.................................................................................................................................................................1960.330.17--0.33-------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGAAGCGC............................................................................................................................................................2130.330.67------------------------------------------------------------------------------------------------0.33---------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTG...................................................................................................................................................................1670.290.29-------------------------------------------------0.14------------------------------------------------------0.14-
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGCA.................................................................................................................................................................1870.290.29---0.14---0.14--------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................GTGGGAAAGGATGTGGAGTAA.............................................................................................................................................................2140.251.75----------------------------------------------------------------------------------------------------0.25-----
...........................................................................................................................................................................................................................................................................................................................................................................................AGGACCTCCGGGAGCTGGC.................................1950.200.200.20---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGGACCTCCGGGAGCA....................................1650.200.20-------------------------------------------------------------------------------------------------0.20--------
...........................................................................................................................................................................................................................................................................................................................................................................................AGGACCTCCGGGAGC.....................................1550.200.20-------------------------------------------------0.20--------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGGACCTCCGGGAGCGTC..................................1850.200.20----------------------------------------------------0.20-----------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................TGTGTTTTGATGCAGG.................................................1650.200.20------------------------------------------------------------------------------------------------------0.20---
...........................................................................................................................................................................................................................................................AAGTGGGAAAGGATGT....................................................................................................................................................................1660.170.17-------------------------------------------------------------------------------------------------------0.17--
.................................................................................................................................................................TGTGTGTCTCCTTCTTT.............................................................................................................................................................................................................................................................1770.140.14---------------------------------------------------------------------------------------------------------0.14
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGATA................................................................................................................................................................1970.140.290.14---------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGTGGGAAAGGATGTGAGAA...............................................................................................................................................................2070.140.290.14---------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................TGGGAAAGGATGTGGA.................................................................................................................................................................1690.110.11-0.11--------------------------------------------------------------------------------------------------------

Antisense strand
GGTTTCTCAACTAAATTTTTTTTCCGTTGTAGGACCTTCTGGACCACCAGGTAAGAGCCCATGGATTTTCTAGTTCAAGGGGAGGCTGTGGGTGGCCAGACCCTAGGATCTCCCTGTTGGGACAGATGCGGGGAGGGCAAGAGCCTGGAGGCAGTCCTGGCTGTGTGTCTCCTTCTTTGTGCCCCTCACCTGAGGCTCTGCCATCACCATCCCCCCACTTGGCACTGCTTCAGCCAGAGAAGGAAGGAAAGAAGTGGGAAAGGATGTGGAAAAGGAATTGATGCCTGCTCAGTTTCACTGGTAAAGGAAATGACAGTAACTTCAGTGAATAATTTTTTTTTTTTTTTTGGTTAATGTCCCTGTTTCTGTGTTTTGATGCAGGACCTCCGGGAGCCGGCGGGTTGCCAGGACACAACGGATTGGATGGACAG
...........................................................................................................................................................................................................((..(((((.(((((((....((.((((.......))))..)).....)))))))...)))))..)).................................................................................................................................................................
.......................................................................................................................................................................................................200........................................................................275..........................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189784SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR343337SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR343336SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR189787SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR343335SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR343334SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189783SRR553574(SRX182780)
source: Heart. (Heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR040032(GSM532917)
G603N. (cervix)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM532885(GSM532885)
G850N. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
............AAATTTTTTTTCCGTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................ 192.000.00-1.00--------------------------------------------1.00-----------------------------------------------------------
......................................CTGGACCACCAGGTATGG....................................................................................................................................................................................................................................................................................................................................................................................... 182.000.00------------------------------------------1.00-1.00-------------------------------------------------------------
......................................CTGGACCACCAGGTATTG....................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00--------------------------------------------1.00-------------------------------------------------------------
............................................................................................................................................................................................................................GGCACTGCTTCAGCCAGT................................................................................................................................................................................................. 181.000.00------------------------------------------------------------------------------------1.00---------------------
...........................................................................................................................................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTGGTTAAATG.......................................................................... 261.000.00---------------------------------------------------------------------1.00------------------------------------
.........................................................................................................................................................GTCCTGGCTGTGTGTCATT................................................................................................................................................................................................................................................................... 191.000.00------------------------------------------------------------------------------1.00---------------------------
......................................CTGGACCACCAGGTATTT....................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-----------1.00----------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................TCCCTGTTTCTGTGTTTGT........................................................ 191.000.00--------------------------------------------------------------------1.00-------------------------------------
......................................CTGGACCACCAGGTATTGT...................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-------------------------------------------------------------------1.00--------------------------------------
.....................................TCTGGACCACCAGGTATGTT...................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00----------------------------------------------------------1.00-----------------------------------------------
.................................................................................................................................................................................................GGCTCTGCCATCACCCG............................................................................................................................................................................................................................. 171.000.00------------------------------------------1.00---------------------------------------------------------------