ID: uc010avp.2_intron_3_0_chr14_96991729_f.5p
GENE: (4)
chr14:96991679-96991928+


(1)
AGO2.ip 		(1)
B-CELL 		(3)
BREAST 		(6)
CELL-LINE 		(1)
FIBROBLAST 		(2)
HEART 		(2)
HELA 		(4)
LIVER 		(7)
OTHER 		(3)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AGGAAAAATTTTTACATTTGGATCTTACAGATTAGGAGTGCATACAAAAGGTAAGTATTATTTCATTTTTCTTAGAAAGGGACCCTTTAGTTCTTAAAAATTATGACATACCCGTCTCAGTTACTTGTGTATCATATAGCTTAGGCTTGCATGGAAGAGAGAGTGCTTTGAGGAGTCTAAATTTTTCAGTAAGAAAGATGTAAAATAATGCTGACTTCTATATCGCCACTGTCCAAAAGTATTATTAAGA
.................................................................................................................((((.(((((..((.....))..))))).)))).....(((((((...((.((((....))))))...)))))))..............................................................
..........................................................................................................107................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM956925PAZD5SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189785SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM359205(GSM359205)
HepG2_nucl_up. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343337
...............................................................................................................CCGTCTCAGTTACTTATAG........................................................................................................................19429.000.00358.0069.002.00---------------------------
..............................................................................................................CCCGTCTCAGTTACTTATAG........................................................................................................................2077.000.0071.004.002.00---------------------------
...............................................................................................................CCGTCTCAGTTACTTATAA........................................................................................................................195.000.005.00-----------------------------
..............................................................................................................CCCGTCTCAGTTACTTACAG........................................................................................................................204.000.004.00-----------------------------
...............................................................................................................CCGTCTCAGTTACTTATA.........................................................................................................................184.000.004.00-----------------------------
..............................................................................................................CCCGTCTCAGTTACTTAGAG........................................................................................................................204.000.004.00-----------------------------
..............................................................................................................CCCGTCTCAGTTACTTTATA........................................................................................................................203.000.003.00-----------------------------
.......................................................................................................................................................................TTGAGGAGTCTAAATTAGA................................................................192.000.00---2.00--------------------------
..............................................................................................................CCCGTCTCAGTTACTTTTAG........................................................................................................................202.000.002.00-----------------------------
.................TTGGATCTTACAGATTAGGAGTGCATACAAAAG........................................................................................................................................................................................................3312.002.00----2.00-------------------------
..............................................................................................................CCCGTCTCAGTTACTTATAC........................................................................................................................202.000.002.00-----------------------------
................................TAGGAGTGCATACAAAAG........................................................................................................................................................................................................1812.002.00------2.00-----------------------
..............................................................................................................CCCGTCTCAGTTACTTTA..........................................................................................................................182.000.002.00-----------------------------
.................TTGGATCTTACAGATTAGGAGT...................................................................................................................................................................................................................2211.001.00----------------1.00-------------
.........................TACAGATTAGGAGTGCATACAA...........................................................................................................................................................................................................2211.001.00-----1.00------------------------
......AATTTTTACATTTGGATCTTACAGATTAG.......................................................................................................................................................................................................................2911.001.00--------------------1.00---------
...............................................................................................................CCGTCTCAGTTACTTCTAG........................................................................................................................191.000.00-1.00----------------------------
..............................................................................................................CCCGTCTCAGTTACTTCCAG........................................................................................................................201.000.001.00-----------------------------
..............................................................................................................CCCGTCTCAGTTACTTATAA........................................................................................................................201.000.001.00-----------------------------
.......................................................................................................................................................TGGAAGAGAGAGTGCAGG.................................................................................181.000.00-----1.00------------------------
.............................GATTAGGAGTGCATAC.............................................................................................................................................................................................................1611.001.00------------1.00-----------------
...........................................ACAAAAGGTAAGTATTAT.............................................................................................................................................................................................1811.001.00--------------------------1.00---
.......................CTTACAGATTAGGAGTGCATACAAAAGGT......................................................................................................................................................................................................2911.001.00---------------1.00--------------
...............................................................................................................CCGTCTCAGTTACTTATGG........................................................................................................................191.000.001.00-----------------------------
.......ATTTTTACATTTGGATCTTACAGAT..........................................................................................................................................................................................................................2511.001.00------------------------1.00-----
..............................................................................................................CCCGTCTCAGTTACTTATA.........................................................................................................................191.000.001.00-----------------------------
.............................................................................................................ACCCGTCTCAGTTACTTATAG........................................................................................................................211.000.001.00-----------------------------
...............................................................................................................CCGTCTCAGTTACTTTTAT........................................................................................................................191.000.001.00-----------------------------
.................TTGGATCTTACAGATTAG.......................................................................................................................................................................................................................1811.001.00----------------------------1.00-
............................................................................................................................................................GAGAGAGTGCTTTGAGGAGTCTAAATTTTTC...............................................................3111.001.00-------------------------1.00----
.................TTGGATCTTACAGATTAGGAGTG..................................................................................................................................................................................................................2311.001.00--------------1.00---------------
................................................................................................................CGTCTCAGTTACTTGATAG.......................................................................................................................191.000.001.00-----------------------------
...............................................................................................................CCGTCTCAGTTACTTAAAG........................................................................................................................191.000.001.00-----------------------------
..............................................................................................................CCCGTCTCAGTTACTATAG.........................................................................................................................1921.000.50--1.00---------------------------
..............................................................................................................CCCGTCTCAGTTACTAAAG.........................................................................................................................1921.000.50--1.00---------------------------
.........................TACAGATTAGGAGTGCATACAAAAGGTG.....................................................................................................................................................................................................281.000.00--------1.00---------------------
..............................................................................................................CCCGTCTCAGTTACTTATCG........................................................................................................................201.000.001.00-----------------------------
...........................................................................................................................................................AGAGAGAGTGCTTTGAGGAGCCT........................................................................231.000.00---1.00--------------------------
...............ATTTGGATCTTACAGATTAGGAG....................................................................................................................................................................................................................2311.001.00---1.00--------------------------
...........TTACATTTGGATCTTACAGATTAGGAG....................................................................................................................................................................................................................2711.001.00-------------------1.00----------
..............................................................................................................CCCGTCTCAGTTACTTTCT.........................................................................................................................191.000.001.00-----------------------------
..............................................................................................................CCCGTCTCAGTTACTTGTAG........................................................................................................................201.000.001.00-----------------------------
................TTTGGATCTTACAGATTAGGAGTGC.................................................................................................................................................................................................................2511.001.00-------1.00----------------------
.........................TACAGATTAGGAGTGCATA..............................................................................................................................................................................................................1911.001.00-----------1.00------------------
............TACATTTGGATCTTACAGATTAGGAGT...................................................................................................................................................................................................................2711.001.00-------1.00----------------------
..............................................................................................................CCCGTCTCAGTTACTTCATA........................................................................................................................201.000.001.00-----------------------------
..........TTTACATTTGGATCTTACAGATTAGGAGTGCATACA............................................................................................................................................................................................................3611.001.00----------------------1.00-------
..............................................................................................................CCCGTCTCAGTTACTTTAT.........................................................................................................................191.000.00----------1.00-------------------
..........................................................................................................................................................AAGAGAGAGTGCTTTGCG..............................................................................181.000.00------------------1.00-----------
............................AGATTAGGAGTGCATACAAAAGG.......................................................................................................................................................................................................2311.001.00---------1.00--------------------
..................TGGATCTTACAGATTAGGAGTGCACAC.............................................................................................................................................................................................................271.000.00---1.00--------------------------
.............................GATTAGGAGTGCATACAAAAGGT......................................................................................................................................................................................................2311.001.00--------1.00---------------------
...............................................................................................................CCGTCTCAGTTACTTAT..........................................................................................................................171.000.001.00-----------------------------
..............................................................................................................CCCGTCTCAGTTACT.............................................................................................................................1520.500.500.50-----------------------------

Antisense strand
AGGAAAAATTTTTACATTTGGATCTTACAGATTAGGAGTGCATACAAAAGGTAAGTATTATTTCATTTTTCTTAGAAAGGGACCCTTTAGTTCTTAAAAATTATGACATACCCGTCTCAGTTACTTGTGTATCATATAGCTTAGGCTTGCATGGAAGAGAGAGTGCTTTGAGGAGTCTAAATTTTTCAGTAAGAAAGATGTAAAATAATGCTGACTTCTATATCGCCACTGTCCAAAAGTATTATTAAGA
.................................................................................................................((((.(((((..((.....))..))))).)))).....(((((((...((.((((....))))))...)))))))..............................................................
..........................................................................................................107................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM956925PAZD5SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189785SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM359205(GSM359205)
HepG2_nucl_up. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343337
...........................................................................................................................................CTTAGGCTTGCATGGTACA............................................................................................ 193.000.00-------------1.00---1.00-----------1.00
........................................................ATTATTTCATTTTTCTTCGTC............................................................................................................................................................................. 211.000.00---------------------------1.00--
...........................................................................................................................................CTTAGGCTTGCATGGAGT............................................................................................. 181.000.00-----------------------1.00------
..............................................................................................................................................................................GTCTAAATTTTTCAGTGGGC........................................................ 201.000.00---------------------1.00--------