ID: uc010apd.1_intron_3_0_chr14_58759857_r.3p
GENE: (1)
chr14:58759807-58760056-


(2)
B-CELL
(2)
BRAIN
(1)
BREAST
(12)
CELL-LINE
(2)
CERVIX
(3)
LIVER
(5)
OTHER
(5)
SKIN

Sense strand
TTAAACCTGGAAGATGGAGGTTGCGGTAAGCTGAGATCGTGGAATTGCACTTCACCCTAGGCAACAGGAGCAAAACTGTCTCAAAAAAAAAAAAAATAATCGCAGTCTTTAAGTTACACATACCATAAAATATATGAGAATTTTTCTTGGACCCTAGGAGTGATTTTTTTTTTCCACTTTTTTTTTTTTTTTCACTTTAGGTGAGCATTTGTACAGTGAAACATTTTGCTACACAAAAGTGATGTTTAGG
..................................................................................((((((((((((((........((((..(((((...((((..........))))..))))).....))))....((((.((.....)).))))...))))))))))))))..........................................................
.............................................................................78........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR040007(GSM532892)
G601T. (cervix)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189787SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTTTGG..................................................2515.002.002.00-3.00-----------------------------
............................................................................................................................................................................TCCACTTTTTTTTTTTTTTATG........................................................223.000.00-1.00-1.001.00---------------------------
..................................................................................AAAAAAAAAAAAAATAATCGTG..................................................................................................................................................222.000.00--------------1.00--------1.00--------
..................................................................................................................................................................ATTTTTTTTTTCCACTTTTTTTTTTTC.............................................................272.000.00---2.00----------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTTTG...................................................2412.002.001.00-1.00-----------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTCACTTCCCC.................................................232.000.002.00-------------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTTT....................................................2312.002.001.00--1.00----------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCAAACG....................................................232.000.00-1.00---1.00--------------------------
.....................................................................................................................................................................TTTTTTTTCCACTTTTTTTTTTTTTTTCAAG......................................................312.000.00---2.00----------------------------
...........................................................................................................................................................AGGAGTGATTTTTTTTTTTCTT.........................................................................222.000.00--2.00-----------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTTTAAG.................................................262.000.00-2.00------------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCACTTTCTTG................................................262.000.00-2.00------------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTTTTTG.................................................2612.002.00----1.00----------------1.00----------
...........................................................................................................................................................................TTCCACTTTTTTTTTTTTTTTGT........................................................231.000.001.00-------------------------------
..................................................................................................................................................................ATTTTTTTTTTCCACTTTTATC..................................................................221.000.00------1.00-------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCACTTCAG..................................................241.000.00-1.00------------------------------
..........................................................................................................................................................................TTTCCACTTTTTTTTTTTTTTCAG........................................................241.000.00---1.00----------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCACTTTTAG.................................................251.000.00-1.00------------------------------
......CTGGAAGATGGAGGTTGCGG................................................................................................................................................................................................................................2011.001.00--------------------1.00-----------
.........................................................................................................................................................................TTTTCCACTTTTTTTTTTGTGC...........................................................221.000.00--------1.00-----------------------
................................................ACTTCACCCTAGGCAACAGGAGCAAAACT.............................................................................................................................................................................2911.001.00-----------------1.00--------------
.........................................................................................................................................................................TTTTCCACTTTTTTTTTTTTTTAG.........................................................241.000.001.00-------------------------------
..........................................................................................................................................................................TTTCCACTTTTTTTTTTTTAG...........................................................211.000.00-----1.00--------------------------
...........................................................................................................................................................................TTCCACTTTTTTTTTTTTAG...........................................................201.000.00----1.00---------------------------
...........................................................................................................................................................................TTCCACTTTTTTTTTTTTTTTCATTA.....................................................261.000.00-1.00------------------------------
............................................................................................................................................................................TCCACTTTTTTTTTTTTTTTCG........................................................221.000.00-1.00------------------------------
.......................................................................................AAAAAAAAATAATCGTGC.................................................................................................................................................181.000.00----------------------------1.00---
...........................................................................................................................................................................TTCCACTTTTTTTTTTTTAGAC.........................................................221.000.00---------1.00----------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCACTCAAG..................................................241.000.00-----1.00--------------------------
...........................................................................................................................................................................TTCCACTTTTTTTTTTTTTTCTG........................................................231.000.00---1.00----------------------------
.........................................................................................................................................................................TTTTCCACTTTTTTTTTTTTTTCACT.......................................................261.000.001.00-------------------------------
...........................................................................................AAAAATAATCGCAGTCTTTAAG.........................................................................................................................................2211.001.00-------------------------1.00------
.............................................................................................................................................................................CCACTTTTTTTTTTTTTTTCCGAG.....................................................241.000.001.00-------------------------------
...............GGAGGTTGCGGTAAGCTGAGATCGTGG................................................................................................................................................................................................................2711.001.00--1.00-----------------------------
...................................................................................................................................................................................TTTTTTTTTTTTTCACTTCAGC.................................................221.000.001.00-------------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTCACTTCAGC.................................................231.000.00--1.00-----------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCACCTTA...................................................231.000.00-----1.00--------------------------
.............................................................................................................................................................................CCACTTTTTTTTTTTTTTTCACTCTAG..................................................271.000.00---1.00----------------------------
..AAACCTGGAAGATGGAGGG.....................................................................................................................................................................................................................................191.000.00-------------------1.00------------
..............................................................................................................................................................................CACTTTTTTTTTTTTTTTCGT.......................................................211.000.001.00-------------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTTTAGGCG...............................................281.000.001.00-------------------------------
..........................................................................................................................................................................TTTCCACTTTTTTTTTTTAGAG..........................................................221.000.00--1.00-----------------------------
................................................................................................................................................TCTTGGACCCTAGGAGTGATTTTTTTT...............................................................................2711.001.001.00-------------------------------
...................................................................................................................................................................TTTTTTTTTTCCACTTTTTTTTTCC..............................................................251.000.00-------1.00------------------------
..........................................................................................................................................................................TTTCCACTTTTTTTTTTTCGC...........................................................211.000.001.00-------------------------------
...................................................................................................................................................TGGACCCTAGGAGTGATTTTTTTTTCC............................................................................271.000.00--1.00-----------------------------
.........................................................................................................................................................................TTTTCCACTTTTTTTTTTTTAATT.........................................................241.000.00----1.00---------------------------
..............................................................................................................................................................................CACTTTTTTTTTTTTTTTCCGG......................................................221.000.00-----1.00--------------------------
..............................................................................................................................................TTTCTTGGACCCTAGGAGTG........................................................................................2011.001.00--1.00-----------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACGGAG...................................................241.000.001.00-------------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTGC....................................................231.000.00--1.00-----------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCAACT.....................................................221.000.00---1.00----------------------------
............................................................................................................................................................................TCCACTTTTTTTTTTTTTTTCAGGG.....................................................251.000.001.00-------------------------------
..............TGGAGGTTGCGGTAAGCTGAGATCGCGG................................................................................................................................................................................................................281.000.001.00-------------------------------
.............................................................................................................................................................................CCACTTTTTTTTTTTTTTTCAATT.....................................................241.000.00----1.00---------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTTTGAG.................................................2611.002.001.00-------------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCACTATTG..................................................241.000.00----1.00---------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCATTTG....................................................231.000.00-----1.00--------------------------
.........................................................................................................................................................................TTTTCCACTTTTTTTTTTTTTAATT........................................................251.000.00----1.00---------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTTTTTT.................................................2611.002.00-----1.00--------------------------
.................................................................................................................................................................................TTTTTTTTTTTTTTTCACTTTATTT................................................251.000.00--1.00-----------------------------
...........................................................................................................................................................................TTCCACTTTTTTTTTTTACAG..........................................................211.000.00---1.00----------------------------
...................................................................................................................................................................................................TTTAGGTGAGCATTTGTA.....................................1811.001.00----------------1.00---------------
............................................................................................................................................................................TCCACTTTTTTTTTTTTTTTCTAG......................................................241.000.001.00-------------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCAAAAG....................................................231.000.00-1.00------------------------------
..................................................................................................................................................................ATTTTTTTTTTCCACTTTTTTTTTTTTTTTCG........................................................321.000.00----1.00---------------------------
..................................................................................AAAAAAAAAAAAAATAATCCCGT.................................................................................................................................................231.000.00-------1.00------------------------
...........................................................................CTGTCTCAAAAAAAAAAAAAATAACTAG...................................................................................................................................................281.000.00----1.00---------------------------
............................................................................................................................................................................TCCACTTTTTTTTTTTACC...........................................................191.000.001.00-------------------------------
...................................................................................................................................................TGGACCCTAGGAGTGATTTTT..................................................................................2111.001.00---------------1.00----------------
.......TGGAAGATGGAGGTTGCGGTAAGC...........................................................................................................................................................................................................................2411.001.00---------1.00----------------------
............................................................................................................................................................................TCCACTTTTTTTTTTTTCTTG.........................................................211.000.00------1.00-------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACAAAT...................................................241.000.00------1.00-------------------------
...........................................................................................................................................ATTTTTCTTGGACCCTAGGAG..........................................................................................2111.001.00--1.00-----------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCACTTTCTTT................................................261.000.00-1.00------------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTCG....................................................231.000.00-1.00------------------------------
.................................................CTTCACCCTAGGCAACAGGAGCAAAACTGT...........................................................................................................................................................................3011.001.00-----------1.00--------------------
..................................................................................AAAAAAAAAAAAAATAATCACG..................................................................................................................................................221.000.00----------------------1.00---------
.................................................................................................................................................................................TTTTTTTTTTTTTTTCACTTTAGTTT...............................................261.000.001.00-------------------------------
...........................AAGCTGAGATCGTGGAAT.............................................................................................................................................................................................................1811.001.00------------------------1.00-------
.............................................................................................................................................................................CCACTTTTTTTTTTTTTTTCAATAG....................................................251.000.00-1.00------------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCAACTG....................................................231.000.00-1.00------------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCAACG.....................................................221.000.00--------1.00-----------------------
.................................................................................................................................................................................TTTTTTTTTTTTTTTCACTTCAAT.................................................241.000.00------1.00-------------------------
....................................................................................................................................................................................TTTTTTTTTTTTCACTTTACTT................................................221.000.00-1.00------------------------------
.........................GTAAGCTGAGATCGTGGAATTGCAC........................................................................................................................................................................................................2511.001.00----------1.00---------------------
.............................................................................................................................................................................CCACTTTTTTTTTTTTTTTCAAAAG....................................................251.000.00------1.00-------------------------
...........................................................................................................................................................................TTCCACTTTTTTTTTTTTTTCCTG.......................................................241.000.001.00-------------------------------
...........................................................................................................................................................................TTCCACTTTTTTTTTTTTAAAG.........................................................221.000.00----1.00---------------------------
..........................................................................................................................................................................TTTCCACTTTTTTTTTTTTTTTCTC.......................................................2521.000.501.00-------------------------------
......................................................................................................................................................................TTTTTTTCCACTTTTTTTTTTTTTAAAG........................................................281.000.00------1.00-------------------------
....................................................................................................................................................................TTTTTTTTTCCACTTTTTTTTTTTTTTTCAG.......................................................311.000.00-1.00------------------------------
..................................................................................................................................................................ATTTTTTTTTTCCACTTTTTTTTCCGC.............................................................271.000.001.00-------------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCACTTAATG.................................................251.000.00---1.00----------------------------
...........................................................................................................................................................................TTCCACTTTTTTTTTTTCG............................................................191.000.001.00-------------------------------
....................................................................................................................................................................................TTTTTTTTTTTTCACTTTAGGGGTT.............................................251.000.001.00-------------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCATAT.....................................................221.000.00-----1.00--------------------------
...AACCTGGAAGATGGAATGC....................................................................................................................................................................................................................................191.000.00--------------------------1.00-----
..............................................................................................................................................................................CACTTTTTTTTTTTTTTTCACTTTAG..................................................2611.001.001.00-------------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTTTAG..................................................2511.001.00---1.00----------------------------
...............................................................................................................................................TTCTTGGACCCTAGGAGTGATTTTTTTTTTCC...........................................................................3211.001.00--1.00-----------------------------
..........................................AATTGCACTTCACCCTTCTG............................................................................................................................................................................................201.000.00------------------1.00-------------
..........................................................................................................................................................................TTTCCACTTTTTTTTTTTTTTAGAG.......................................................251.000.001.00-------------------------------
....ACCTGGAAGATGGAGGTTGCGGTAAGCTGAGA......................................................................................................................................................................................................................3211.001.00-----------------------------1.00--
............................................................................................................................................................................TCCACTTTTTTTTTTTCCG...........................................................191.000.00---1.00----------------------------
.............................................................................................................................................................................CCACTTTTTTTTTTTTTTTCACTTTAAG.................................................281.000.00-1.00------------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACACAG...................................................241.000.00---1.00----------------------------
..................................................................................................................................................................ATTTTTTTTTTCCACTTTAG....................................................................201.000.00-1.00------------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTTTTG..................................................2511.002.00-1.00------------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCACTTTCTT.................................................251.000.00--1.00-----------------------------
.......................................................................................AAAAAAAAATAATCGTTCT................................................................................................................................................191.000.00---------------------------1.00----
............................................................................................................................................................................TCCACTTTTTTTTTTTTTTTCTAAG.....................................................251.000.00---1.00----------------------------
...................................................................................................................................................................TTTTTTTTTTCCACTTTTTTTTGAAG.............................................................261.000.00--1.00-----------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTTTTGAG................................................2711.002.001.00-------------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTTATAG.................................................2630.670.33-0.67------------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTTCTTG.................................................2630.670.33-0.67------------------------------
..........................................................................................................................................................................TTTCCACTTTTTTTTTTTTTTTC.........................................................2320.500.50------0.50-------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTCACTTTAG..................................................2220.500.50-----0.50--------------------------
...................................................................................................................................................................................TTTTTTTTTTTTTCACTTTAG..................................................2130.330.33---0.33----------------------------
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTT.....................................................2230.330.33------0.33-------------------------
..........................................AATTGCACTTCACCCGGCC.............................................................................................................................................................................................1930.330.33------------------------------0.33-
...............................................................................................................................................................................ACTTTTTTTTTTTTTTTCACTTCAGC.................................................2630.330.330.33-------------------------------
..........................................AATTGCACTTCACCC.................................................................................................................................................................................................1530.330.33------------------------------0.33-
................................................ACTTCACCCTAGGCAACA........................................................................................................................................................................................1840.250.25----------0.25---------------------

Antisense strand
TTAAACCTGGAAGATGGAGGTTGCGGTAAGCTGAGATCGTGGAATTGCACTTCACCCTAGGCAACAGGAGCAAAACTGTCTCAAAAAAAAAAAAAATAATCGCAGTCTTTAAGTTACACATACCATAAAATATATGAGAATTTTTCTTGGACCCTAGGAGTGATTTTTTTTTTCCACTTTTTTTTTTTTTTTCACTTTAGGTGAGCATTTGTACAGTGAAACATTTTGCTACACAAAAGTGATGTTTAGG
..................................................................................((((((((((((((........((((..(((((...((((..........))))..))))).....))))....((((.((.....)).))))...))))))))))))))..........................................................
.............................................................................78........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR040007(GSM532892)
G601T. (cervix)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189787SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
...........................AAGCTGAGATCGTGGTCTC............................................................................................................................................................................................................ 191.000.001.00-------------------------------
..................................................................................AAAAAAAAAAAAAATAATCGTG.................................................................................................................................................. 221.000.00----1.00---------------------------
.................................................................................CAAAAAAAAAAAAAATAATGTCT.................................................................................................................................................. 231.000.00------1.00-------------------------
................................................................................TCAAAAAAAAAAAAAATAACCGG................................................................................................................................................... 231.000.001.00-------------------------------
.................................................................................................................................................................................AGTGAAAAAAAAAAAAAAA...................................................... 1901.001.00-------------1.00------------------
..................GGTTGCGGTAAGCTGCGTC..................................................................................................................................................................................................................... 191.000.00-------1.00------------------------
...............................................................................CTCAAAAAAAAAAAAAATCCG...................................................................................................................................................... 211.000.00--1.00-----------------------------
.................................................................................CAAAAAAAAAAAAAATAATGGAC.................................................................................................................................................. 231.000.001.00-------------------------------
.............................................................................................AAATAATCGCAGTCTTTAAGG........................................................................................................................................ 211.000.00--------1.00-----------------------
..........TCAGCTTACCGCAACCTCCATCTT........................................................................................................................................................................................................................ 2411.001.00------------1.00-------------------
..................................................................................AAAAAAAAAAAAAATAATCGTTTG................................................................................................................................................ 241.000.00----1.00---------------------------
..............TGGAGGTTGCGGTAAGCTGAGAACC................................................................................................................................................................................................................... 251.000.001.00-------------------------------
.....................................................................................................................................................................AAAAAAAAAAGTGGAAAAAAAA............................................................... 2280.120.12-------------------------------0.12