ID: uc010alh.1_intron_0_0_chr14_24624902_f.3p
GENE: RNF31(1)
chr14:24626325-24626574+


(2)
AGO2.ip 		(3)
B-CELL 		(3)
BRAIN 		(10)
BREAST 		(15)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(6)
HEART 		(1)
HELA 		(7)
LIVER 		(2)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GTAGGAGAAAATGAAAGGACCAAGGATGGCCTCTCATTTTGAGATCTGAGCAAATGGTAGGTGGCAGTGACATAAACCAAGCTGGGGAACCACTGGATGTGAGTGGAGGGGCCAGCAAGAAAGGCCAGGGGATGGGATAGAGCTCCCATGTGAAGCCTACTTTCCCTCTGGCAGTGGGAGGAGCAGCACCGAGGTCGGAGCTGTGAGGACTTCCAGAACTGGAAACGCATGAACGACCCAGAATACCAGG
...........................................................................................................................((((((((((((((......))))))..((((....)))).))))))))..............................................................................
....................................................................................................................117...........................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM416733(GSM416733)
HEK293. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR037931(GSM510469)
293GFP. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038858(GSM458541)
MEL202. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................AGGCCAGGGGATGGGATAGAGCTCC........................................................................................................25114.0014.009.00----1.00------------1.00------------------1.00--1.001.00------------------
.........................................................................................................................................................AGCCTACTTTCCCTCTGGCAGT...........................................................................22111.0011.00---6.00---1.00---3.00----------1.00-------------------------------------
.........................................................................................................................AGGCCAGGGGATGGGATAGAGCTC.........................................................................................................2416.006.006.00-----------------------------------------------------------
.........................................................................................................................................................................................................TGTGAGGACTTCCAGAACTGGAAACGCAT....................2913.003.00--3.00---------------------------------------------------------
.........................................................................................................................AGGCCAGGGGATGGGATAGAGCTCT........................................................................................................2513.006.00---------------------------------1.00-1.00----------1.00-------------
......................................................................................................................................................................................................................AGAACTGGAAACGCATGAA.................1913.003.00-----1.00----1.00--1.00----------------------------------------------
..............................................................................................................................................................................................GAGGTCGGAGCTGTGAGG..........................................1813.003.00-1.00------------------------1.00-----1.00---------------------------
...........................................................................................................................................................................................................TGAGGACTTCCAGAACTGGAAACGCATGA..................2913.003.00-------3.00----------------------------------------------------
...............................................................................................................................................................................................................................AACGCATGAACGACCCAGAATA.....2212.002.00----------2.00-------------------------------------------------
.......................................................................................................................................................................................................................GAACTGGAAACGCATGAACGACC............2312.002.00--1.00-1.00-------------------------------------------------------
......................................................................................................................................................................................................................AGAACTGGAAACGCATGAACGA..............2212.002.00-------------------1.00-------------------------1.00--------------
.........................................................................................................................................................AGCCTACTTTCCCTCTGGCAGA...........................................................................222.000.00------------------1.00------------------------------1.00----------
................................................................................................................................GGGATGGGATAGAGCTCCCATGTGAAGCC.............................................................................................2912.002.00--------2.00---------------------------------------------------
.................................................................................................................................................................................................................................CGCATGAACGACCCA..........1512.002.00---------------2.00--------------------------------------------
..............................................................................................................................................................................................GAGGTCGGAGCTGTGAGGACTTCCAGA.................................2712.002.00-1.00-------1.00--------------------------------------------------
.....................................................................................................................................................................................................................................TGAACGACCCAGAATACC...1812.002.00------1.00--1.00--------------------------------------------------
.....................................................................................................................................................................................................................CAGAACTGGAAACGCATGAAC................2112.002.00-----------------2.00------------------------------------------
............................................................................................................................................................................................................GAGGACTTCCAGAACTGGAAACGCATGAAC................3012.002.00--2.00---------------------------------------------------------
............................................................................................................................................................................................CCGAGGTCGGAGCTGTGAGGACTT......................................2411.001.00-1.00----------------------------------------------------------
............................................................................................................................................................................................CCGAGGTCGGAGCTGTGAGGA.........................................2111.001.00-1.00----------------------------------------------------------
......................................................................................................................................................................................................................AGAACTGGAAACGCATGA..................1811.001.00------------1.00-----------------------------------------------
..................ACCAAGGATGGCCTCTCATTTT..................................................................................................................................................................................................................2211.001.00-----------------------------------------------------1.00------
..........................................................................................................................................................................................................GTGAGGACTTCCAGAACTGGAAACGC......................2611.001.00-------------------1.00----------------------------------------
..............................................................................................................................................................................................GAGGTCGGAGCTGTGAGGACTTCCAGAACTGG............................3211.001.00--------------1.00---------------------------------------------
............................................................................................................................................................................................................................GGAAACGCATGAACGACCCAGAACACC...271.000.00---------1.00--------------------------------------------------
................................................................................................................................................................................................GGTCGGAGCTGTGAGGACTTCCAGAAC...............................2711.001.00------------1.00-----------------------------------------------
........................................................................................................................................................................................AGCACCGAGGTCGGAGCTGTGAGGACT.......................................2711.001.00-1.00----------------------------------------------------------
..........................................................................................................................................................................................................GTGAGGACTTCCAGAACTGGAAACGCATG...................2911.001.00------------------------------------------------------1.00-----
..........................................................................................................................................................................................CACCGAGGTCGGAGCTGTGAGGACT.......................................2511.001.00--------------1.00---------------------------------------------
.....................................................................................................................................................................................................GAGCTGTGAGGACTTCCAGAACTGGAAACGCATTTT.................361.000.00--------------------------------------------------1.00---------
..................................................................................................................................................................................................................TTCCAGAACTGGAAACGCATGAACGAC.............2711.001.00--1.00---------------------------------------------------------
....................................................................................................................................................................................................................CCAGAACTGGAAACGCATGAAC................2211.001.00------1.00-----------------------------------------------------
......................................................................................................................................................................................................................AGAACTGGAAACGCATGAACGAC.............2311.001.00----1.00-------------------------------------------------------
...................................................................................................................................................................................................................TCCAGAACTGGAAACGCATGAACGACCC...........2811.001.00----1.00-------------------------------------------------------
.........................................................................................................................AGGCCAGGGGATGGGATAGAGCT..........................................................................................................2311.001.00-----1.00------------------------------------------------------
......................................................................................................................................................................................................................AGAACTGGAAACGCATGAACGACCC...........2511.001.00-1.00----------------------------------------------------------
...............................................................................................................................................................................................AGGTCGGAGCTGTGAGGACT.......................................2011.001.00----1.00-------------------------------------------------------
...................................ATTTTGAGATCTGAGGGC.....................................................................................................................................................................................................181.000.00-------------1.00----------------------------------------------
.....AGAAAATGAAAGGACTTGA..................................................................................................................................................................................................................................191.000.00-----------------------1.00------------------------------------
.........................................................................AAACCAAGCTGGGGAACTAA.............................................................................................................................................................201.000.00-------------------------------------------------------1.00----
...........................................................................................................................................................................................ACCGAGGTCGGAGCTGTGAGGACTTCCA...................................2811.001.00------------1.00-----------------------------------------------
............................................................................................................................................................................................CCGAGGTCGGAGCTGTGAGGAC........................................2211.001.00--------------------1.00---------------------------------------
..............................................................................................................................................................................................................................AAACGCATGAACGACCCAGAATA.....2311.001.00-----1.00------------------------------------------------------
.....................................................................................................................................................................................................................CAGAACTGGAAACGCATGAACGACC............2511.001.00-------------------------------------------1.00----------------
.....................................................................................................................................................................................................................CAGAACTGGAAACGCATGAA.................2011.001.00-------------1.00----------------------------------------------
..............................................................................................................................................................................................GAGGTCGGAGCTGTGAGGACTTCCAGAACTGT............................321.000.00-1.00----------------------------------------------------------
........................................................................................................................................................................................................................AACTGGAAACGCATGAACG...............1911.001.00-----------------------------1.00------------------------------
..................................................CAAATGGTAGGTGGCAGTGACA..................................................................................................................................................................................2211.001.00----1.00-------------------------------------------------------
...........................................................................................................................................................CCTACTTTCCCTCTGGCAGA...........................................................................201.000.00------------------------------------1.00-----------------------
....................................................................................................................................................................................................................CCAGAACTGGAAACGCATGAACGACCC...........2711.001.00------1.00-----------------------------------------------------
.........................................................................................................................................................................................................................ACTGGAAACGCATGAACG...............1811.001.00---------------------------1.00--------------------------------
....................................................................................................................................................................................GAGCAGCACCGAGGTATTG...................................................191.000.00----------------1.00-------------------------------------------
......................................................................................................................................................................................................................AGAACTGGAAACGCATGAACGACC............2411.001.00------------------------------1.00-----------------------------
.....................................................................................................................................................................................................GAGCTGTGAGGACTTATGT..................................191.000.00----------------1.00-------------------------------------------
..............AAGGACCAAGGATGGGCT..........................................................................................................................................................................................................................181.000.00--------------------------------------1.00---------------------
.........................................................................................CCACTGGATGTGAGTGGAGGGGCCAGC......................................................................................................................................2711.001.00--------1.00---------------------------------------------------
..............AAGGACCAAGGATGGCCTCTC.......................................................................................................................................................................................................................2111.001.00--------------------------------------------1.00---------------
.............................................................................................................................................................................................................AGGACTTCCAGAACTGGAA..........................1911.001.00------1.00-----------------------------------------------------
...................................................................................................................................................................................................................TCCAGAACTGGAAACGCATGAA.................2211.001.00---------------------------------------------------1.00--------
...................................ATTTTGAGATCTGAGGGCT....................................................................................................................................................................................................191.000.00---------------------1.00--------------------------------------
...............................................................................................................................................................................GGGAGGAGCAGCACCGCAAA.......................................................201.000.00-------------------------1.00----------------------------------
....................................................................................................................................TGGGATAGAGCTCCCATGTGAAG...............................................................................................2311.001.00-------------------------------1.00----------------------------
......................................................................................................GTGGAGGGGCCAGCAAGAAAGGCCAGG.........................................................................................................................2711.001.00------------------------------------------1.00-----------------
..............................................................................AAGCTGGGGAACCACTGGATGTGAGT..................................................................................................................................................2611.001.00----------------------------------------------------1.00-------
................................................................................................................................................................................GGAGGAGCAGCACCGAGGAAGA....................................................221.000.00-----------------------------------------------1.00------------
............................................................................................................................................................................................................GAGGACTTCCAGAACTTCGG..........................201.000.00------------------------------------------------1.00-----------
....................................................................................................................................TGGGATAGAGCTCCCATGTGAAGC..............................................................................................2411.001.00----------------------------1.00-------------------------------
...............................................................................................................................................................................................................................AACGCATGAACGACCCAGAAT......2111.001.00---------------------------------------1.00--------------------
.....................................................................................................................................................................................................................CAGAACTGGAAACGCATGA..................1911.001.00----------------------------------1.00-------------------------
......................................................................................................................................................................................................AGCTGTGAGGACTTCCAG..................................1820.500.50---------------------------------------------------------0.50--
.................................................................................................TGTGAGTGGAGGGGCC.........................................................................................................................................1620.500.50--------------------------------------------------------0.50---
..............................................................................................................................................................................................GAGGTCGGAGCTGTG.............................................1530.330.33-0.33----------------------------------------------------------
...............................................................................................................................................................................................AGGTCGGAGCTGTGA............................................1530.330.33-----------------------------------------------------------0.33
........................................................................................................................................................................TGGCAGTGGGAGGAGC..................................................................1690.110.11--------------------------------------------------------0.11---

Antisense strand
GTAGGAGAAAATGAAAGGACCAAGGATGGCCTCTCATTTTGAGATCTGAGCAAATGGTAGGTGGCAGTGACATAAACCAAGCTGGGGAACCACTGGATGTGAGTGGAGGGGCCAGCAAGAAAGGCCAGGGGATGGGATAGAGCTCCCATGTGAAGCCTACTTTCCCTCTGGCAGTGGGAGGAGCAGCACCGAGGTCGGAGCTGTGAGGACTTCCAGAACTGGAAACGCATGAACGACCCAGAATACCAGG
...........................................................................................................................((((((((((((((......))))))..((((....)))).))))))))..............................................................................
....................................................................................................................117...........................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM416733(GSM416733)
HEK293. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR037931(GSM510469)
293GFP. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038858(GSM458541)
MEL202. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................................................ATGTGAAGCCTACTTTC...................................................................................... 171.000.00------------------------1.00-----------------------------------
...............................................................................................................CTGGCCTTTCTTGCTGG.......................................................................................................................... 1720.500.50--------0.50---------------------------------------------------
......................................................................................................................ATCCCCTGGCCTTTC..................................................................................................................... 1580.120.12--------------------------------------------------------0.12---