ID: uc010aev.2_intron_39_0_chr13_77736091_r.5p
GENE: (43)
chr13:77738389-77738638-


(1)
B-CELL 		(2)
BRAIN 		(2)
BREAST 		(9)
CELL-LINE 		(1)
HEART 		(1)
LIVER 		(1)
OTHER 		(19)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TGGGGTTTGTGCAGCAGCTCTGATGAAGAAGGACCTAGCACTTCCTATTGGTAAGTGTGGCCAATACTGGATGTTTTTTGATAGGGTTTTGTTTTGTTTTGTATGTATTATAAAAGGGCCAAAAATAGATTTGCAAAATGAATTTTGTAATCTCATATATTCATGAGCAATAACTGCTTCATGTACTGGTAATTTGAGTTTGTTTAGAGACTGAAGGGTATCCTCTGACCTTTTTTAATTTACACACGCA
.....................................................................................(((((...((.(((((((.....))))))).))...)))))....((((((((....)))))))).(((((((...((((((((.....)))).)))).....)))...))))....................................................
...........................................................................76..........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189783SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................ATAGGGTTTTGTTTTGTTTTTTTC..................................................................................................................................................249.000.007.002.00----------------------------------------
..................................................................................AGGGTTTTGTTTTGTTTCTTG...................................................................................................................................................215.000.002.003.00----------------------------------------
................................................................................ATAGGGTTTTGTTTTGTTTTTCTT..................................................................................................................................................245.000.004.001.00----------------------------------------
................................................................................ATAGGGTTTTGTTTTGTTTTCTTT..................................................................................................................................................244.000.003.001.00----------------------------------------
..................................................................................AGGGTTTTGTTTTGTTTCTGC...................................................................................................................................................213.000.002.001.00----------------------------------------
....................TGATGAAGAAGGACCTAGCA..................................................................................................................................................................................................................2012.002.00-------2.00----------------------------------
.................................................................................TAGGGTTTTGTTTTGTTTTTCT...................................................................................................................................................222.000.002.00-----------------------------------------
...........CAGCAGCTCTGATGAAGAAGGACCTA.....................................................................................................................................................................................................................2612.002.00--------2.00---------------------------------
.................................................................................TAGGGTTTTGTTTTGTTTTTCTT..................................................................................................................................................232.000.002.00-----------------------------------------
......................................................................................TTTTGTTTTGTTTTGTATGGG...............................................................................................................................................212.000.002.00-----------------------------------------
.......................TGAAGAAGGACCTAGCACT................................................................................................................................................................................................................1912.002.00-----2.00------------------------------------
................................................................................ATAGGGTTTTGTTTTGTTTCTTT...................................................................................................................................................232.000.002.00-----------------------------------------
...........................................................................................................................................................................................................................ATCCTCTGACCTTTTGG..............172.000.00--------------1.00---------------------1.00-----
.........................................................................TTTTTTGATAGGGTTTTGTTTCGTC........................................................................................................................................................252.000.00--2.00---------------------------------------
..................TCTGATGAAGAAGGACCTAGCACTTCCTATT.........................................................................................................................................................................................................3111.001.00---------------------------1.00--------------
.................CTCTGATGAAGAAGGACCTAGCACT................................................................................................................................................................................................................2511.001.00----------------------------------1.00-------
.................................................................................TAGGGTTTTGTTTTGTTTTGTCTC.................................................................................................................................................241.000.001.00-----------------------------------------
..............CAGCTCTGATGAAGAAGGAC........................................................................................................................................................................................................................2011.001.00-----------------------1.00------------------
..................................................................CTGGATGTTTTTTGATAGGGTTT.................................................................................................................................................................2311.001.00---------------1.00--------------------------
...........................................................................................TTTTGTTTTGTATGTATTATAAAAGGGC...................................................................................................................................2811.001.00-----------------1.00------------------------
.................................................................................TAGGGTTTTGTTTTGTTTTTTCT..................................................................................................................................................231.000.00-1.00----------------------------------------
............AGCAGCTCTGATGAAGAAGGACCTC.....................................................................................................................................................................................................................251.000.00---------------------------------1.00--------
................................................................................ATAGGGTTTTGTTTTGTTTCTT....................................................................................................................................................221.000.001.00-----------------------------------------
.......................................................................................TTTGTTTTGTTTTGTATGACC..............................................................................................................................................211.000.00-1.00----------------------------------------
................................................................................ATAGGGTTTTGTTTTGTTTCGTC...................................................................................................................................................231.000.001.00-----------------------------------------
.................................................................................TAGGGTTTTGTTTTGTTTCGTT...................................................................................................................................................221.000.00-1.00----------------------------------------
................................................................................ATAGGGTTTTGTTTTGTTGTTC....................................................................................................................................................221.000.00-1.00----------------------------------------
................................................................................ATAGGGTTTTGTTTTGTTTTTCT...................................................................................................................................................231.000.001.00-----------------------------------------
................................................................................ATAGGGTTTTGTTTTGTTTTCTT...................................................................................................................................................231.000.001.00-----------------------------------------
......TTGTGCAGCAGCTCTGATGAAGAAGGAC........................................................................................................................................................................................................................2811.001.00----------------------------1.00-------------
................................................................................ATAGGGTTTTGTTTTGTTTTTTC...................................................................................................................................................231.000.001.00-----------------------------------------
.................................................................................TAGGGTTTTGTTTTGTTTTCTTC..................................................................................................................................................231.000.001.00-----------------------------------------
...GGTTTGTGCAGCAGCTCTGATGAAGA.............................................................................................................................................................................................................................2611.001.00------------------1.00-----------------------
....................................................................................................................................................................................ATGTACTGGTAATTTCT.....................................................171.000.00--1.00---------------------------------------
.................................................................................TAGGGTTTTGTTTTGTTTTAAT...................................................................................................................................................221.000.00-1.00----------------------------------------
.....................GATGAAGAAGGACCTAGCAC.................................................................................................................................................................................................................2011.001.00-------------------------1.00----------------
...........................GAAGGACCTAGCACTTCC.............................................................................................................................................................................................................1811.001.00--------------------------------1.00---------
.........TGCAGCAGCTCTGATGAAGAAGGA.........................................................................................................................................................................................................................2411.001.00----1.00-------------------------------------
............................................................................................................................................................................ACTGCTTCATGTACTGACTG..........................................................201.000.00--------------------1.00---------------------
.................................................................................................................................................................................................TTGAGTTTGTTTAGAGACTGAAGGGT...............................2611.001.00----------------------1.00-------------------
................................................................................ATAGGGTTTTGTTTTGTTTTTGGC..................................................................................................................................................241.000.00-1.00----------------------------------------
...............AGCTCTGATGAAGAAGGACC.......................................................................................................................................................................................................................2011.001.00-------------1.00----------------------------
.....TTTGTGCAGCAGCTCTGATG.................................................................................................................................................................................................................................2011.001.00----------1.00-------------------------------
................................................................................ATAGGGTTTTGTTTTGTTTTGCTCT.................................................................................................................................................251.000.001.00-----------------------------------------
.............GCAGCTCTGATGAAGAAGGAC........................................................................................................................................................................................................................2111.001.00-----------1.00------------------------------
................................................................................ATAGGGTTTTGTTTTGTTCTTT....................................................................................................................................................221.000.00-----------------------------1.00------------
......TTGTGCAGCAGCTCTGA...................................................................................................................................................................................................................................1711.001.00---------1.00--------------------------------
.....TTTGTGCAGCAGCTCTGATGAAGAA............................................................................................................................................................................................................................2511.001.00------------1.00-----------------------------
....GTTTGTGCAGCAGCTCTGATGAAGAAGGAC........................................................................................................................................................................................................................3011.001.00-------------------1.00----------------------
.........................................................................TTTTTTGATAGGGTTTTTTC.............................................................................................................................................................201.000.00--1.00---------------------------------------
..............CAGCTCTGATGAAGAAGG..........................................................................................................................................................................................................................1811.001.00-----------------------------------1.00------
..........GCAGCAGCTCTGATGAAGAAGG..........................................................................................................................................................................................................................2211.001.00----1.00-------------------------------------
................................................................................ATAGGGTTTTGTTTTGTTTTCTTC..................................................................................................................................................241.000.001.00-----------------------------------------
.......................................................................................TTTGTTTTGTTTTGTATGATTT.............................................................................................................................................221.000.001.00-----------------------------------------
..................................................................................AGGGTTTTGTTTTGTTTAGG....................................................................................................................................................201.000.00-1.00----------------------------------------
.........TGCAGCAGCTCTGATGAAGAAGGACC.......................................................................................................................................................................................................................2611.001.00--------------------------1.00---------------
...................CTGATGAAGAAGGACCTAGCACTTC..............................................................................................................................................................................................................2511.001.00------------------------1.00-----------------
........GTGCAGCAGCTCTGATGAAGAA............................................................................................................................................................................................................................2211.001.00----------------1.00-------------------------
.....................................................................................................................................................................................TGTACTGGTAATTTGAAGAG.................................................201.000.00------1.00-----------------------------------
..................................................................................AGGGTTTTGTTTTGTTTTGGTCT.................................................................................................................................................231.000.00-1.00----------------------------------------
................................................................................ATAGGGTTTTGTTTTGTTTTTTCT..................................................................................................................................................241.000.001.00-----------------------------------------
................................................................................ATAGGGTTTTGTTTTGTTTTGTACG.................................................................................................................................................251.000.001.00-----------------------------------------
.......................................................................................................................................................................................................................GGGTATCCTCTGACCTC..................171.000.00------------------------------1.00-----------
................................................................................ATAGGGTTTTGTTTTGTTTTGTCTC.................................................................................................................................................251.000.001.00-----------------------------------------
................................................................................ATAGGGTTTTGTTTTGTTTCGTT...................................................................................................................................................231.000.001.00-----------------------------------------
......................ATGAAGAAGGACCTAG....................................................................................................................................................................................................................1630.670.67----------0.33---------------------------0.33---
..........................AGAAGGACCTAGCACT................................................................................................................................................................................................................1620.500.50-0.50----------------------------------------
..............................................................................TGATAGGGTTTTGTTTTGTT........................................................................................................................................................2020.500.50---------0.50--------------------------------
......................ATGAAGAAGGACCTAGCA..................................................................................................................................................................................................................1820.500.50-------------------------------------0.50----
.........TGCAGCAGCTCTGATGA................................................................................................................................................................................................................................1750.200.20-----------------------------------------0.20
........................GAAGAAGGACCTAGCA..................................................................................................................................................................................................................1650.200.20----------------------------------------0.20-

Antisense strand
TGGGGTTTGTGCAGCAGCTCTGATGAAGAAGGACCTAGCACTTCCTATTGGTAAGTGTGGCCAATACTGGATGTTTTTTGATAGGGTTTTGTTTTGTTTTGTATGTATTATAAAAGGGCCAAAAATAGATTTGCAAAATGAATTTTGTAATCTCATATATTCATGAGCAATAACTGCTTCATGTACTGGTAATTTGAGTTTGTTTAGAGACTGAAGGGTATCCTCTGACCTTTTTTAATTTACACACGCA
.....................................................................................(((((...((.(((((((.....))))))).))...)))))....((((((((....)))))))).(((((((...((((((((.....)))).)))).....)))...))))....................................................
...........................................................................76..........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189783SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
...........................................................................................TTTTGTTTTGTATGTATTTTG.......................................................................................................................................... 211.000.00---1.00--------------------------------------
...........................................................................................................................................................................................................................ATCCTCTGACCTTTTGAA............. 181.000.00---1.00--------------------------------------
........................................................................................TTGTTTTGTTTTGTATGGA............................................................................................................................................... 191.000.00---------------------1.00--------------------
...........................................................................................................TTATAAAAGGGCCAACC.............................................................................................................................. 171.000.00------1.00-----------------------------------
........................................................................................................................................................................................................................GTAAATTAAAAAAGGTCAGAGGATACC....... 2711.001.00-------------------------------1.00----------
...........................................................................................................................................................................................................................AAAAAAGGTCAGAGGAT.............. 1740.250.25---------------------------------------0.25--