ID: uc010abf.2_intron_25_0_chr13_33330095_f.3p
GENE: (26)
chr13:33332025-33332274+


(1)
BRAIN
(1)
BREAST
(12)
CELL-LINE
(2)
CERVIX
(1)
LIVER
(1)
OTHER
(2)
RRP40.ip
(3)
SKIN

Sense strand
TATCTGCATTGTTGACCTGTTTTTATATGTTTGTATGACATATTCTTTTTCCCTGCTGGTTTGTAACTGTTTCTTTTTTTTTTTTCTTCCTGGAGTTATATTATCTAGGTTTGTTATATTTATATTTAGAATTATTGTATCTATATTTAACAAAGGATGATTTTCTTCTATATTTCTTTTTTCCTTTTTTTTTTTTTTAGATGTCTTTGGTTTGTTCTGGAAATATTAATGGCTAAAAATGAAAATAACA
.............................................................((((((.....................((((((.........))))))...))))))...................((((((.....((.((((((........................)))))).)).......))))))...............................................
............................................................61...............................................................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................................................................TTTTTCCTTTTTTTTTTTTTTACTTG...............................................2611.000.00-1.001.006.00-3.00---------------
..................................................................................................................................................................................TTTTCCTTTTTTTTTTTTTTATAG................................................246.000.00-1.003.002.00-----------------
.................................................................ACTGTTTCTTTTTTTTTTTTCTTCCCGG.............................................................................................................................................................284.000.004.00--------------------
..................................................................................................................................................................................TTTTCCTTTTTTTTTTTTTTATG.................................................233.000.00---2.00--1.00--------------
.......................................................................................................................................................................CTATATTTCTTTTTTCCTTTAAG............................................................233.000.00-2.001.00------------------
........................................................................................................................................................................TATATTTCTTTTTTCCTTTTTTTTTTTTTTTTG.................................................333.000.00---2.00-1.00---------------
......................................................................................................................................................................TCTATATTTCTTTTTTCTCAG...............................................................213.000.00-1.002.00------------------
.................................................................ACTGTTTCTTTTTTTTTTTAG....................................................................................................................................................................213.000.003.00--------------------
.....................................................................TTTCTTTTTTTTTTTTCTTCGAG..............................................................................................................................................................233.000.003.00--------------------
.......................................................................TCTTTTTTTTTTTTCTTCCTTAG............................................................................................................................................................232.000.00--2.00------------------
.................................................................................................................................................................................TTTTTCCTTTTTTTTTAAGC.....................................................202.000.00------2.00--------------
..............................................................................................................................................................................TCTTTTTTCCTTTTTTTTTTTGGC....................................................242.000.001.00---1.00----------------
.................................................................ACTGTTTCTTTTTTTTTTTTGGG..................................................................................................................................................................232.000.002.00--------------------
.....................................................................TTTCTTTTTTTTTTTTCTTCCTTTAG...........................................................................................................................................................262.000.001.00---1.00----------------
..............................................................................................................................................................................TCTTTTTTCCTTTTTTTTTAG.......................................................212.000.00-1.001.00------------------
..................................................................CTGTTTCTTTTTTTTTTTTCTCTC................................................................................................................................................................242.000.001.00---1.00----------------
.......................................................................TCTTTTTTTTTTTTCTTCCTTTAG...........................................................................................................................................................242.000.00--1.001.00-----------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTTTTCACC...................................................272.000.00----2.00----------------
..........................................................................................................................................................................TATTTCTTTTTTCCTTTTTTTTTTTTTTG...................................................292.000.00-1.00-1.00-----------------
.......................................................................TCTTTTTTTTTTTTCTTCCCTC.............................................................................................................................................................222.000.002.00--------------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTTTTTAAAT.................................................282.000.00---2.00-----------------
.................................................................ACTGTTTCTTTTTTTTTTCAG....................................................................................................................................................................212.000.002.00--------------------
........................................................................................................................................................................TATATTTCTTTTTTCCTTTTTTTTTTTTTG....................................................302.000.00---1.00-1.00---------------
........................................................................................................................................................................................................ATGTCTTTGGTTTGTTCTGGAAA...........................2312.002.00-------2.00-------------
.....................................................................TTTCTTTTTTTTTTTTCTTCCTTTA............................................................................................................................................................252.000.00----2.00----------------
........................................................................CTTTTTTTTTTTTCTTCCCCAG............................................................................................................................................................222.000.00-1.001.00------------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTTTTTCG....................................................262.000.00-1.001.00------------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTTTTTTTAAG.................................................292.000.00-1.001.00------------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTTTTTGATG..................................................282.000.002.00--------------------
.................................................................................TTTTCTTCCTGGAGTTATTTTC...................................................................................................................................................222.000.002.00--------------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTCCCG.......................................................222.000.00-1.001.00------------------
.......................................................................TCTTTTTTTTTTTTCTTCCCCAG............................................................................................................................................................232.000.00--2.00------------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTTAAAT....................................................232.000.00---1.00-1.00---------------
..........................................................................TTTTTTTTTTTCTTCCGGCC............................................................................................................................................................201.000.00----1.00----------------
.......................................................................TCTTTTTTTTTTTTCTTCCGGTA............................................................................................................................................................231.000.001.00--------------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTTTTACG...................................................261.000.00-1.00-------------------
........................................................................................................................................................................TATATTTCTTTTTTCCTTTTTTTTTTTTTTTTTG................................................341.000.00---1.00-----------------
.......................................................................TCTTTTTTTTTTTTCTTCCCG..............................................................................................................................................................211.000.001.00--------------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTTTTTTCGAG................................................291.000.001.00--------------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTTTTTTTTTAAGG.................................................301.000.00-1.00-------------------
..............................................................................................................................................................................TCTTTTTTCCTTTTTTTTTGGTT.....................................................231.000.001.00--------------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTTAAAG.....................................................251.000.00-1.00-------------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTTTTTTCAAG................................................271.000.00---1.00-----------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTTTTTTTTTTCAG.................................................301.000.00--1.00------------------
...................................................................................................................................................................TCTTCTATATTTCTTTTTTCCTTTTTTTTTTTTA.....................................................341.000.00-----1.00---------------
..................................................................CTGTTTCTTTTTTTTTTTTCTTCTC...............................................................................................................................................................251.000.001.00--------------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTTTTTTTTAC....................................................271.000.00----1.00----------------
.................................................................ACTGTTTCTTTTTTTTTTTTCCC..................................................................................................................................................................231.000.001.00--------------------
.................................................................ACTGTTTCTTTTTTTTTTTTCTGA.................................................................................................................................................................241.000.001.00--------------------
..............................................................................................................................................................................TCTTTTTTCCTTTTTTTTTCG.......................................................211.000.00-1.00-------------------
................................................................................................................................................................................TTTTTTCCTTTTTTTTTTTTTTAGAAG...............................................271.000.001.00--------------------
........................................................................CTTTTTTTTTTTTCTTCCTTATG...........................................................................................................................................................231.000.00--1.00------------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTACG......................................................211.000.00------1.00--------------
.....................................................................................................................................................................................TCCTTTTTTTTTTTTTTAGAGAGC.............................................241.000.001.00--------------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTCACC.....................................................221.000.00----1.00----------------
..............................................................................................................................................................................TCTTTTTTCCTTTTTTTTTTTTTAAGC.................................................271.000.001.00--------------------
.......................................................................TCTTTTTTTTTTTTCTTCGGTA.............................................................................................................................................................221.000.001.00--------------------
..................................................................................................................................................................................TTTTCCTTTTTTTTTTTTTTACG.................................................231.000.00-1.00-------------------
.......................................................................TCTTTTTTTTTTTTCTTCCCCG.............................................................................................................................................................221.000.00--1.00------------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTTTTTTCTAG....................................................271.000.00-1.00-------------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTTGGC......................................................241.000.001.00--------------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTTTTTATTT.................................................281.000.00-----1.00---------------
........................................................................................................................................................................TATATTTCTTTTTTCCTTTTTTTTTTTTTTG...................................................311.000.00---1.00-----------------
.....................................................................TTTCTTTTTTTTTTTTCTTAGCG..............................................................................................................................................................231.000.00----1.00----------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTTTTTAAT...................................................271.000.00---1.00-----------------
.......................................................................................................................................................................CTATATTTCTTTTTTCCTTTTTTTTTTCTAG....................................................311.000.00--1.00------------------
.............................................................................................................................................TATATTTAACAAAGGATGA..........................................................................................1911.001.00-----------------1.00---
.................................................................................................................................................................................TTTTTCCTTTTTTTTTATGT.....................................................201.000.00------1.00--------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTTTCCAG...................................................241.000.00-1.00-------------------
......................................................................TTCTTTTTTTTTTTTCTTCCGAAG............................................................................................................................................................241.000.001.00--------------------
...................................................................TGTTTCTTTTTTTTTTTTCTCG.................................................................................................................................................................221.000.001.00--------------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTTTTTTTAAAG................................................301.000.00---1.00-----------------
........................................................................CTTTTTTTTTTTTCTTCCTTGGG...........................................................................................................................................................231.000.001.00--------------------
.....................................................................TTTCTTTTTTTTTTTTCTTCGGTC.............................................................................................................................................................241.000.00----1.00----------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTTAAAT....................................................251.000.00---1.00-----------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTTTTTCTCG..................................................281.000.00-1.00-------------------
........................................................................................................................................................................TATATTTCTTTTTTCCTTTTTTTTTTTTTTCTTG................................................341.000.00-----1.00---------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTTTAACT....................................................261.000.001.00--------------------
..................................................................CTGTTTCTTTTTTTTTTTGTAG..................................................................................................................................................................221.000.001.00--------------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTTTTCTTG......................................................251.000.00--1.00------------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTTTTTTAGG.................................................2611.001.00-----1.00---------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTTTTTTAGACAT..............................................291.000.00-----1.00---------------
...............................................................................................................................................................ATTTTCTTCTATATTTCTTTTTTTAG.................................................................261.000.00--1.00------------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTTTTTTAAAG.................................................291.000.00-----1.00---------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTTTTTTACGG................................................291.000.00------1.00--------------
......................................................................TTCTTTTTTTTTTTTCTTCCCTGG............................................................................................................................................................241.000.001.00--------------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTGTC..........................................................211.000.00----1.00----------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTTTTTAAAG.................................................281.000.00---1.00-----------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTTTTTTAATG................................................291.000.00------1.00--------------
........................................................................................................................................................................TATATTTCTTTTTTCCTTTTTTTTTTTTTTTG..................................................321.000.00---1.00-----------------
..........................................................................................................................................................................TATTTCTTTTTTCCTTTTTTATG.........................................................231.000.00---1.00-----------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTCAAG......................................................211.000.00-1.00-------------------
......................................................................TTCTTTTTTTTTTTTCTTCCTGGAAG..........................................................................................................................................................261.000.001.00--------------------
..............................................................................................................................................................................TCTTTTTTCCTTTTTTTTTTTTTACC..................................................261.000.001.00--------------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTTTTTTTTTTTTA.................................................301.000.00-1.00-------------------
......................................................................TTCTTTTTTTTTTTTCTTCAGGC.............................................................................................................................................................231.000.00----1.00----------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTTTTTTTTTTCTTG................................................311.000.00--1.00------------------
.....................................................................TTTCTTTTTTTTTTTTCTTCCTGGAGT..........................................................................................................................................................2711.001.001.00--------------------
....................................................................................................................................TATTGTATCTATATTGTC....................................................................................................181.000.00-1.00-------------------
..........................................................................................................................................................................TATTTCTTTTTTCCTTTTTTTTCGGG......................................................261.000.001.00--------------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTTTTTTAAACG...............................................281.000.00-1.00-------------------
.................................................................ACTGTTTCTTTTTTTTTAAAG....................................................................................................................................................................211.000.001.00--------------------
.........................................................................................................................................................................ATATTTCTTTTTTCCTTTTTTTTTTCTAG....................................................291.000.00--1.00------------------
..................................................................................................................................................................................TTTTCCTTTTTTTTTTTTTTATAAG...............................................251.000.00---1.00-----------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTTTTTTAAATG...............................................301.000.00--1.00------------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTCGTC.......................................................231.000.00----1.00----------------
..............................................................................................................................................................................TCTTTTTTCCTTTTTTTTTTAGCG....................................................241.000.001.00--------------------
....................................................................................................................................................................................TTCCTTTTTTTTTTTTTTAGATTTAT............................................261.000.00------1.00--------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTTTTTCACC..................................................281.000.00----1.00----------------
.....................................................................TTTCTTTTTTTTTTTTCTTCTTTA.............................................................................................................................................................241.000.001.00--------------------
.....................................................................TTTCTTTTTTTTTTTTCTTCTAAG.............................................................................................................................................................241.000.00--1.00------------------
......................................................................TTCTTTTTTTTTTTTCTTCCCGGA............................................................................................................................................................241.000.00----1.00----------------
..................................................................................................................................................................................TTTTCCTTTTTTTTTTTTTTACTTA...............................................251.000.00---1.00-----------------
................................................................................................................................................................................TTTTTTCCTTTTTTTTTTTTTTATAG................................................261.000.00---1.00-----------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTTCATC....................................................231.000.00----1.00----------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTTTTGT....................................................231.000.00------1.00--------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTTTACG........................................................231.000.00-1.00-------------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTTTTGGGC..................................................271.000.001.00--------------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTTTTTTCG..................................................271.000.00-1.00-------------------
.................................................................ACTGTTTCTTTTTTTTTTTTCAG..................................................................................................................................................................231.000.00----1.00----------------
.................................................................ACTGTTTCTTTTTTTTTTTTCCCT.................................................................................................................................................................241.000.001.00--------------------
..............................................................................................................................................................................TCTTTTTTCCTTTTTTTTTTTTTTCGAG................................................281.000.001.00--------------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTTTTTTCG...................................................271.000.00-1.00-------------------
.......................................................................TCTTTTTTTTTTTTCTTCCTCC.............................................................................................................................................................221.000.00----1.00----------------
....................................................................................................................................................................CTTCTATATTTCTTTTTTCCTTTTTTTTTTTTAG....................................................341.000.00---1.00-----------------
....................................................................................................................................................................CTTCTATATTTCTTTTTTTTTG................................................................221.000.00--1.00------------------
..........................................................................................................................................................................................TTTTTTTTTTTTAGATGCTGC...........................................211.000.00--------------1.00------
....................................................................................................................................................................................TTCCTTTTTTTTTTTTTTATGTG...............................................231.000.00-----1.00---------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTCCAG.......................................................231.000.00--1.00------------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTAAAT.....................................................221.000.00---1.00-----------------
........................................................................CTTTTTTTTTTTTCTTCCTGGAG...........................................................................................................................................................2311.001.00----1.00----------------
..........................................................................................................................................................................TATTTCTTTTTTCCTTTTTTTTTGAG......................................................261.000.001.00--------------------
.................................................................ACTGTTTCTTTTTTTTTTGGG....................................................................................................................................................................211.000.001.00--------------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTTTTTTAG..................................................2511.001.00--1.00------------------
.........................................................................................................................................................................ATATTTCTTTTTTCCTTTTTTTTTTTTCTAG..................................................311.000.00------1.00--------------
.......................................................................TCTTTTTTTTTTTTCTTCCTTAAT...........................................................................................................................................................241.000.00--1.00------------------
.....................................................................TTTCTTTTTTTTTTTTCTTCTAG..............................................................................................................................................................231.000.00--1.00------------------
.................................................................ACTGTTTCTTTTTTTTCGAG.....................................................................................................................................................................201.000.001.00--------------------
...................................................................................................................................................................TCTTCTATATTTCTTTTTTTTTG................................................................231.000.00--1.00------------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTCACG.....................................................221.000.001.00--------------------
.................................................................ACTGTTTCTTTTTTTTTTTTCTGAG................................................................................................................................................................251.000.001.00--------------------
................................................................................................................................................................................................................................ATTAATGGCTAAAAATGAA.......1911.001.00----------------1.00----
........................................................................CTTTTTTTTTTTTCTTCCTTCG............................................................................................................................................................221.000.00-1.00-------------------
...................................................................................................................................................................TCTTCTATATTTCTTTTTG....................................................................191.000.00--1.00------------------
.....................................................................................................................................................................................TCCTTTTTTTTTTTTTTAGGCTC..............................................231.000.001.00--------------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTCCAG......................................................241.000.00-1.00-------------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTTTTTTAGC.....................................................261.000.001.00--------------------
......................................................................................................................................................................................CCTTTTTTTTTTTTTTAGGGTT..............................................221.000.001.00--------------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTTTTGGC....................................................261.000.001.00--------------------
........................................................................CTTTTTTTTTTTTCTTCCTTATT...........................................................................................................................................................231.000.00--1.00------------------
...................................................................................................................................................................TCTTCTATATTTCTTTTTTTTA.................................................................221.000.00--1.00------------------
.................................................................ACTGTTTCTTTTTTTTCAC......................................................................................................................................................................191.000.001.00--------------------
.....................................................................TTTCTTTTTTTTTTTTCTTATCG..............................................................................................................................................................231.000.00---1.00-----------------
..........................................................................................................................................................................TATTTCTTTTTTCCTTTTTTTTTTTTTG....................................................281.000.00-1.00-------------------
.......................................................................TCTTTTTTTTTTTTCTTCCTTGGA...........................................................................................................................................................241.000.00----1.00----------------
....................................................................................................................................................................CTTCTATATTTCTTTTTTATT.................................................................211.000.00-1.00-------------------
.........................................................................................................................................................................ATATTTCTTTTTTCCTTTTTTTTAAG.......................................................261.000.00-1.00-------------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTTTTTTACTG....................................................271.000.00---1.00-----------------
......................................................................TTCTTTTTTTTTTTTCTTCCCG..............................................................................................................................................................221.000.00--1.00------------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTGGC......................................................231.000.001.00--------------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTTTTTTCC......................................................251.000.001.00--------------------
........................................TATTCTTTTTCCCTGGGT................................................................................................................................................................................................181.000.00---------1.00-----------
................................................................................................................................................................................TTTTTTCCTTTTTTTTTTTTTTACAG................................................261.000.00-1.00-------------------
.........................................................................................................................................................................ATATTTCTTTTTTCCTTTTTTTTTTTTTTTTTG................................................331.000.00------1.00--------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTTTTTTG.......................................................241.000.00--1.00------------------
...................................................................TGTTTCTTTTTTTTTTTTCTTCCTG..............................................................................................................................................................2511.001.00----1.00----------------
.........................................................................................................................................................................ATATTTCTTTTTTCCTTTTTTTTTTTTTTTTTC................................................331.000.00-----1.00---------------
.....................................................................................................................................................................................TCCTTTTTTTTTTTTTTAGAAGGG.............................................241.000.001.00--------------------
..................................................................CTGTTTCTTTTTTTTTTTTCTCTTG...............................................................................................................................................................251.000.00------1.00--------------
..............................................................................................................................................................................TCTTTTTTCCTTTTTTTTTTTTAATT..................................................261.000.00-1.00-------------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTTTTTCTG......................................................251.000.00-1.00-------------------
.................................................................ACTGTTTCTTTTTTTTTTTTCTGAGG...............................................................................................................................................................261.000.00----1.00----------------
.................................................................ACTGTTTCTTTTTTTTTTTTGTAG.................................................................................................................................................................241.000.00----1.00----------------
..................................................................................................................................................................................TTTTCCTTTTTTTTTTTTTTATAGG...............................................251.000.00-1.00-------------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTTTTTTAG..................................................2711.001.00--1.00------------------
.....................................................................TTTCTTTTTTTTTTTTCTTCCTCCC............................................................................................................................................................251.000.001.00--------------------
....................................................................................................................................................................................TTCCTTTTTTTTTTTTTTATATG...............................................231.000.00-----1.00---------------
.................................................................................................................................................................................TTTTTCCTTTTTTTTTTTTTTACTAA...............................................261.000.00-----1.00---------------
.........................................................................................................................................................................ATATTTCTTTTTTCCTTTTTTTTTAG.......................................................261.000.00----1.00----------------
...................................................................TGTTTCTTTTTTTTTTTTCTGTC................................................................................................................................................................231.000.00----1.00----------------
...................................................................................................................................................................................TTTCCTTTTTTTTTTTTTTAGGGT...............................................241.000.00----1.00----------------
...................................................................TGTTTCTTTTTTTTTTTTCTTGGT...............................................................................................................................................................241.000.00----1.00----------------
.................................................................................................................................................................................TTTTTCCTTTTTTTTTTTTTTATTAG...............................................261.000.00-----1.00---------------
.....................................................................TTTCTTTTTTTTTTTTCTTCGCC..............................................................................................................................................................231.000.001.00--------------------
..............................................................................................................................................................................TCTTTTTTCCTTTTTTTTTTTTTTAAAA................................................281.000.00-1.00-------------------
..........................................................................................................................................................................TATTTCTTTTTTCCTTTTTTTTTTTTTTCTTG................................................321.000.00-1.00-------------------
..................................................................................................................................................................................TTTTCCTTTTTTTTTTTTTTACTTG...............................................251.000.00--1.00------------------
..............................................................................................................................................................................TCTTTTTTCCTTTTTTTTTTTCTAT...................................................251.000.00------1.00--------------
.........................................................................TTTTTTTTTTTTCTTCCGGC.............................................................................................................................................................201.000.00----1.00----------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTTTTTTAACTT...............................................301.000.00----1.00----------------
..................................................................................................................................................................................TTTTCCTTTTTTTTTTTTTTATTTG...............................................251.000.00---1.00-----------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTAG.......................................................201.000.00-1.00-------------------
...................................................................................................................................................................................TTTCCTTTTTTTTTTTTTTATTGG...............................................241.000.00---1.00-----------------
.....................................................................TTTCTTTTTTTTTTTTCTTCTCAG.............................................................................................................................................................241.000.00--1.00------------------
........................................................................CTTTTTTTTTTTTCTTCCGGAG............................................................................................................................................................221.000.001.00--------------------
.........................................................................................................................................................................ATATTTCTTTTTTCCTTTTTTTTTTTTTAG...................................................301.000.00-1.00-------------------
........................................................................................................................................................................TATATTTCTTTTTTCCTTTTTTTTAAG.......................................................271.000.00------1.00--------------
.......................................................................TCTTTTTTTTTTTTCTTCCTTTA............................................................................................................................................................231.000.00----1.00----------------
.....................................................................TTTCTTTTTTTTTTTTCTTCCTTAG............................................................................................................................................................251.000.00--1.00------------------
.....................................................................TTTCTTTTTTTTTTTTCTTCCCTCC............................................................................................................................................................251.000.001.00--------------------
...................................................................TGTTTCTTTTTTTTTTTTCGGAG................................................................................................................................................................231.000.00----1.00----------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTTTTTTTTCTG...................................................281.000.00-----1.00---------------
...........................................................................................................................................................................ATTTCTTTTTTCCTTTTTTTTTTTCTG....................................................271.000.00-1.00-------------------
...................................................................................................................................................................................TTTCCTTTTTTTTTTTTTTAGGGTG..............................................251.000.00------1.00--------------
.................................................................ACTGTTTCTTTTTTTTTTTTCA...................................................................................................................................................................221.000.001.00--------------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTTTTTACC..................................................251.000.001.00--------------------
..............................................................................................................................................................................TCTTTTTTCCTTTTTTTTTTTTTTAACAG...............................................291.000.00-1.00-------------------
...................................................................................................................................................................TCTTCTATATTTCTTTTTTTTTA................................................................231.000.00-1.00-------------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTTTTTTACC.................................................261.000.00----1.00----------------
..........................................................................................................................................................................TATTTCTTTTTTCCTTTTTATAT.........................................................231.000.00------1.00--------------
...........................................................................................................................................TCTATATTTAACAAACATG............................................................................................191.000.00-----------1.00---------
.................................................................................................................................................................................TTTTTCCTTTTTTTTTTTTTTACTGG...............................................261.000.00---1.00-----------------
....................................................................................................................................................................................TTCCTTTTTTTTTTTTTTATCC................................................221.000.00------1.00--------------
..............................................................................................................................................................................TCTTTTTTCCTTTTTTTTTTTTGCAG..................................................261.000.001.00--------------------
..................................................................................................................................................................................TTTTCCTTTTTTTTTTTTTTATATT...............................................251.000.00-----1.00---------------
..............................................................................................................................................................................TCTTTTTTCCTTTTTTTTTTTTGTC...................................................251.000.001.00--------------------
....................................................................................................................................................................CTTCTATATTTCTTTTTTCAG.................................................................211.000.00-1.00-------------------
.......................................................................TCTTTTTTTTTTTTCTTCCTTCAG...........................................................................................................................................................241.000.00-1.00-------------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTGGG......................................................231.000.001.00--------------------
.................................................................................................................................................................................TTTTTCCTTTTTTTTTTTTTTACCAT...............................................261.000.001.00--------------------
...................................................................................................................................................................................TTTCCTTTTTTTTTTTTTTACG.................................................221.000.00--1.00------------------
.................................................................ACTGTTTCTTTTTTTTTTTTAACC.................................................................................................................................................................241.000.001.00--------------------
............................................................................................................................................................................TTTCTTTTTTCCTTTTTTTTTTATG.....................................................251.000.00-1.00-------------------
...................................................................................................................................................................................TTTCCTTTTTTTTTTTTTTATGG................................................231.000.00-----1.00---------------
.............................................................................................................................................................................TTCTTTTTTCCTTTTTTTTTTTTGTTG..................................................271.000.001.00--------------------
..................................................................................................................................................................................TTTTCCTTTTTTTTTTTTTTAGTCC...............................................251.000.00------1.00--------------
.......................................................................TCTTTTTTTTTTTTCTTCCTTCT............................................................................................................................................................231.000.00------1.00--------------
.................................................................ACTGTTTCTTTTTTTTTCGAG....................................................................................................................................................................211.000.001.00--------------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTTCACG....................................................231.000.00--1.00------------------
..........................................................................................................................................................................TATTTCTTTTTTCCTTTTTTTTCTTG......................................................261.000.00-1.00-------------------
...................................................................................................................................................................TCTTCTATATTTCTTTTTTTTG.................................................................221.000.00---1.00-----------------
.................................................................ACTGTTTCTTTTTTTTTTTTCGAG.................................................................................................................................................................241.000.001.00--------------------
...............................................................................................................................................................................CTTTTTTCCTTTTTTTTTTTGTG....................................................231.000.001.00--------------------
......................................................................................................................................................................................CCTTTTTTTTTTTTTTAGGAGG..............................................221.000.00----1.00----------------
................................................................................................................................................................TTTTCTTCTATATTTCTTTTTTTTTA................................................................261.000.00-----1.00---------------
.............................................TTTTTCCCTGCTGGTTTGT..........................................................................................................................................................................................1911.001.00-------------1.00-------
.........................................................................................................................................................................ATATTTCTTTTTTCCTTTTTTTTTTT.......................................................2630.670.670.330.33-------------------
......................................................................TTCTTTTTTTTTTTTCTTCCTG..............................................................................................................................................................2240.500.50-0.25---0.25---------------
......................................................................TTCTTTTTTTTTTTTCTTCCTGG.............................................................................................................................................................2320.500.50----0.50----------------
.................................................................ACTGTTTCTTTTTTTTTTTTCTTTTG...............................................................................................................................................................2640.500.25----0.50----------------
............................................................................................................................................................................................................CTTTGGTTTGTTCTGGA.............................1720.500.50--------------------0.50
................................................................................................................................................................................TTTTTTCCTTTTTTTTTTTTTTAG..................................................2480.380.38-0.12---0.25---------------
.........................................................................................................................................................................ATATTTCTTTTTTCCTTTTTTTTTTTAG.....................................................2830.330.670.33--------------------
...........................................................................TTTTTTTTTTCTTCCTGGAG...........................................................................................................................................................2030.330.330.33--------------------
.................................................................ACTGTTTCTTTTTTTTTTTTCTTG.................................................................................................................................................................2440.250.25------0.25--------------
......................................................................TTCTTTTTTTTTTTTCTTCCTGAT............................................................................................................................................................2440.250.50----0.25----------------
.................................................................ACTGTTTCTTTTTTTTTTTTCTT..................................................................................................................................................................2340.250.250.25--------------------
...............................................................................................................................................................................................TTTTTTTAGATGTCTTT..........................................1760.170.17------0.17--------------
............................................................................TTTTTTTTTCTTCCTGGAG...........................................................................................................................................................1960.170.17----0.17----------------
........................................................................................................................................................................TATATTTCTTTTTTCCTTTT..............................................................2060.170.17------0.17--------------
....................................................................................................................................................................................TTCCTTTTTTTTTTTTTTAGATG...............................................2370.140.14-----0.14---------------
.......................................................................TCTTTTTTTTTTTTCTTCCTGATGG..........................................................................................................................................................2570.140.140.14--------------------
.......................................................................TCTTTTTTTTTTTTCTTCCTG..............................................................................................................................................................2170.140.140.14--------------------

Antisense strand
TATCTGCATTGTTGACCTGTTTTTATATGTTTGTATGACATATTCTTTTTCCCTGCTGGTTTGTAACTGTTTCTTTTTTTTTTTTCTTCCTGGAGTTATATTATCTAGGTTTGTTATATTTATATTTAGAATTATTGTATCTATATTTAACAAAGGATGATTTTCTTCTATATTTCTTTTTTCCTTTTTTTTTTTTTTAGATGTCTTTGGTTTGTTCTGGAAATATTAATGGCTAAAAATGAAAATAACA
.............................................................((((((.....................((((((.........))))))...))))))...................((((((.....((.((((((........................)))))).)).......))))))...............................................
............................................................61...............................................................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................................CTTTTTTTTTTTTCTTCGATT............................................................................................................................................................. 211.000.00--------1.00------------
..................................................................................................................TATATTTATATTTAGAATTTAT.................................................................................................................. 221.000.00------------------1.00--
.........................................................................GGAAGAAAAAAAAAAAA................................................................................................................................................................ 1701.001.00------------1.00--------
.....................................................................TTTCTTTTTTTTTTTTCTTCCTA.............................................................................................................................................................. 231.000.00---------------1.00-----
..........................................TTCTTTTTCCCTGCTGGC.............................................................................................................................................................................................. 181.000.00-------------------1.00-
......................................................................................................................................................................................................................TTCTGGAAATATTAATTTT................. 191.000.00----------1.00----------
...............................................................................TTTTTTCTTCCTGGAGTCATA...................................................................................................................................................... 211.000.00--------1.00------------
...............................................TTTCCCTGCTGGTTTCCAG........................................................................................................................................................................................ 191.000.00------1.00--------------
..........................................................................................................................................................................AAAAAAAAAAAAAGGAAAAAAGAAATA..................................................... 2790.110.11---------0.11-----------