ID: uc010abe.1_intron_6_0_chr13_33096408_r.3p
GENE: N4BP2L2(3)
chr13:33096358-33096607-


(4)
B-CELL 		(5)
BRAIN 		(3)
BREAST 		(14)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(4)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
XRN.ip

Sense strand
AATGCACCTGGCATATGGTTGTGTCCTTTAATTCCCTTTCAATCTAGTGGAGTTCTTTTTTTCATGATACTGACTGAAGAGATTGCACAGTTTTGGTTTTAAGTACAGAGACGTAGTACATTTCTTAATAATAAATGTTTAACTTTTGTGTGTTTTAACCTAATTTGTTTTTTTATTTTTAAATTTATATTTTATTTCAGCAAAACAAGCTATCGATCAGGGAAGATCTCCAGTTATAATAGATAACACT
..............................................................................((((..(((.((((..((((..(((((((.(((.((...((((((.........))))))...)).))).))))))).)))).)))))))..))))............................................................................
...........................................................60...................................................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR343335GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR040018(GSM532903)
G701N. (cervix)
.......................................................................................................................................................................TTTTTTTATTTTTAAATTTATATTTTATTTCAG..................................................33124.0024.00-7.00--6.00-7.00-4.00------------------------------------
................................................................TGATACTGACTGAAGAGATTGCA...................................................................................................................................................................23116.0016.004.00--1.00-4.00-4.00---------2.00-----1.00---------------------
.................................................................GATACTGACTGAAGAGATTGC....................................................................................................................................................................21112.0012.00-----6.00-6.00-------------------------------------
.......................................................................................................................................................................TTTTTTTATTTTTAAATTTATATTTTATTCCAG..................................................3311.000.00-5.00--5.00---1.00------------------------------------
....................................................................ACTGACTGAAGAGATTGCA...................................................................................................................................................................1915.005.00---3.00---------2.00-------------------------------
.......................................................................................................................................................................TTTTTTTATTTTTAAATTTATA.............................................................2224.504.50--4.50------------------------------------------
...............................................................ATGATACTGACTGAAGAGATTGCA...................................................................................................................................................................2414.004.002.00--2.00-----------------------------------------
.......................................................................................................................................................................................................GCAAAACAAGCTATCGATCAGG.............................2214.004.00-----------3.00----------1.00----------------------
..................................................................ATACTGACTGAAGAGATTGCA...................................................................................................................................................................2114.004.00---------1.00----------1.00----1.00--------1.00----------
........................................................................................................................................................................TTTTTTATTTTTAAATTTATATTTTATTTCAG..................................................3213.003.00-2.00----1.00--------------------------------------
.................................................................GATACTGACTGAAGAGATTGCA...................................................................................................................................................................2213.003.001.00---------------1.00-1.00--------------------------
........................................................................................................................................................TTTTAACCTAATTTGTTT................................................................................1843.003.00--3.00------------------------------------------
........................................................................................................................................................TTTTAACCTAATTTGTTC................................................................................183.000.00--3.00------------------------------------------
.................................................................GATACTGACTGAAGAGATTGCAC..................................................................................................................................................................2312.002.00--------------------------1.00--------------1.00---
.........................................................................................................................................................................TTTTTATTTTTAAATTTATATTTTATTTCAG..................................................3112.002.00------1.00-1.00------------------------------------
...................................................................TACTGACTGAAGAGATTGCA...................................................................................................................................................................2012.002.002.00--------------------------------------------
.........................................................................................................................................................................TTTTTATTTTTAAATTTATATTTTATTCCAG..................................................312.000.00-1.00--1.00----------------------------------------
..........................................................................................................................................................................TTTTATTTTTAAATTTATATTTTATTTCAG..................................................3012.002.00----2.00----------------------------------------
.................................................................GATACTGACTGAAGAGATTGCACA.................................................................................................................................................................2412.002.00----------------------------1.00-----------1.00----
..........................................................................................................................................................................................................AAACAAGCTATCGATCAGGG............................2012.002.001.00-----------------------------1.00--------------
...............................................................ATGATACTGACTGAAGAGATTGCAC..................................................................................................................................................................2512.002.001.00----------------------------------1.00---------
..........................................................................................................AGAGACGTAGTACATTTA..............................................................................................................................181.000.001.00--------------------------------------------
.....................................................................................................AGTACAGAGACGTAGTACATT................................................................................................................................2111.001.00---1.00-----------------------------------------
....................................................................ACTGACTGAAGAGATTGC....................................................................................................................................................................1811.001.00----------------1.00----------------------------
.............................................................................................................................................................................................................................GAAGATCTCCAGTTATAATAGA.......2211.001.00---------------------1.00-----------------------
...........................................................................................................................................................TAACCTAATTTGTTTTTTTATTTTTAAAT..................................................................2911.001.00--1.00------------------------------------------
......................................................................TGACTGAAGAGATTGCACA.................................................................................................................................................................1911.001.00---------------------------1.00-----------------
......................................................................................................................................................................................................................GATCAGGGAAGATCTCCAGTTATA............2411.001.00-------------------------------------1.00-------
..........................................................................................................................................................................................................AAACAAGCTATCGATCAGGGAAG.........................2311.001.001.00--------------------------------------------
.......................................................................................................................................................................TTTTTTTATTTTTAAATTTATATTTTATTCCA...................................................321.000.00-1.00-------------------------------------------
..................................................................ATACTGACTGAAGAGATT......................................................................................................................................................................1811.001.001.00--------------------------------------------
.................................................................GATACTGACTGAAGAGATTG.....................................................................................................................................................................2011.001.00--------------------------------1.00------------
...........................................................TTTCATGATACTGACTGAAGAGA........................................................................................................................................................................2311.001.00-----------------------------1.00---------------
........................................................................................................ACAGAGACGTAGTACATTTC..............................................................................................................................2011.001.001.00--------------------------------------------
...................................................................TACTGACTGAAGAGATTGC....................................................................................................................................................................1911.001.00---1.00-----------------------------------------
........................................................................ACTGAAGAGATTGCACAGTTTTGGTT........................................................................................................................................................2611.001.00---1.00-----------------------------------------
....................................................................ACTGACTGAAGAGATTGCATC.................................................................................................................................................................2111.005.001.00--------------------------------------------
.......................................................................................................................................................................................................GCAAAACAAGCTATCGATC................................1911.001.00---------1.00-----------------------------------
................................................................TGATACTGACTGAAGAGA........................................................................................................................................................................1811.001.00------------------------------------1.00--------
.............................AATTCCCTTTCAATCAAC...........................................................................................................................................................................................................181.000.00---------------------------------------1.00-----
..................................................................................................................................................................ATTTGTTTTTTTATTGGAG.....................................................................191.000.00----------1.00----------------------------------
..........................................................................................................................................................................................ATATTTTATTTCAGCAAAACAAGCTATCG...................................2911.001.00--1.00------------------------------------------
.........GGCATATGGTTGTGTCCTTTAA...........................................................................................................................................................................................................................2211.001.001.00--------------------------------------------
...............................................................................................................................................................................................................AGCTATCGATCAGGGAAG.........................1811.001.001.00--------------------------------------------
...............................................................ATGATACTGACTGAAGAGATTGCACAGCT..............................................................................................................................................................291.000.00----------1.00----------------------------------
..................................................................ATACTGACTGAAGAGATTGC....................................................................................................................................................................2011.001.00---1.00-----------------------------------------
....................................................................................................................................................TGTGTTTTAACCTAATTTGTTT................................................................................2211.001.00----------1.00----------------------------------
..................................................................ATACTGACTGAAGAGATTGCATA.................................................................................................................................................................2311.004.00---1.00-----------------------------------------
....................................................................................................AAGTACAGAGACGTAGTACAT.................................................................................................................................2111.001.001.00--------------------------------------------
........................................................................................................ACAGAGACGTAGTACATTTCTT............................................................................................................................2211.001.00--------------------------------------1.00------
.......................................................................................................................................................................TTTTTTTATTTTTAAATTTATATAG..........................................................251.000.00------1.00--------------------------------------
....................................................................ACTGACTGAAGAGATTGCACAGTTTT............................................................................................................................................................2611.001.00------------------------------------------1.00--
....................................................................................................AAGTACAGAGACGTAGTACATTTCTTAATA........................................................................................................................3011.001.00---1.00-----------------------------------------
.......................................................................................CAGTTTTGGTTTTAAGTACAGAGACG.........................................................................................................................................2611.001.001.00--------------------------------------------
.........................................................................................................CAGAGACGTAGTACATTTCTTA...........................................................................................................................2211.001.00---1.00-----------------------------------------
........................................................................................................................................................................TTTTTTATTTTTAAATTTATATTTTATTCCAG..................................................321.000.00-1.00-------------------------------------------
.........................................................................................................................................................TTTAACCTAATTTGTTTTTTTATTTTTAAAT..................................................................3111.001.00--1.00------------------------------------------
......................................................................TGACTGAAGAGATTGCAC..................................................................................................................................................................1811.001.001.00--------------------------------------------
..............................................................................................................................................................................................................AAGCTATCGATCAGGGAAGATCTCC...................2511.001.00---------1.00-----------------------------------
..............................................................................................................................................................................ATTTTTAAATTTATATTTTATTTCAG..................................................2611.001.00-1.00-------------------------------------------
...........................................................................GAAGAGATTGCACAGTTTTG...........................................................................................................................................................2011.001.00---1.00-----------------------------------------
.........................................ATCTAGTGGAGTTCTTTTTCTTC..........................................................................................................................................................................................231.000.00---------------1.00-----------------------------
.......................................................................................CAGTTTTGGTTTTAAGTA.................................................................................................................................................1821.001.001.00--------------------------------------------
..........................................................................................................AGAGACGTAGTACATTTCT.............................................................................................................................1911.001.00---1.00-----------------------------------------
..........................................................................................................AGAGACGTAGTACATTTC..............................................................................................................................1811.001.001.00--------------------------------------------
.........................................................................................................CAGAGACGTAGTACATTTCTT............................................................................................................................2111.001.001.00--------------------------------------------
..............................................................CATGATACTGACTGAAGAGATTGCA...................................................................................................................................................................2511.001.00-------------------------------1.00-------------
............................................................................................................................TTAATAATAAATGTTTAACTTTT.......................................................................................................2311.001.00-------------------1.00-------------------------
................................................................................................................................................................................................................GCTATCGATCAGGGAAGATCT.....................2111.001.00--------------1.00------------------------------
..............................................................................................................................................................................................................AAGCTATCGATCAGGGAAGATCTCCAG.................2711.001.00---------------1.00-----------------------------
................................................................................................................................................................TAATTTGTTTTTTTATCTGT......................................................................201.000.00--1.00------------------------------------------
........TGGCATATGGTTGTGTCCT...............................................................................................................................................................................................................................1911.001.00---------------------------------1.00-----------
.......................................................................................................................................................................TTTTTTTATTTTTAAATTTATATTTTATTTCAT..................................................331.000.00-1.00-------------------------------------------
.......................................................................................................................................................................................................GCAAAACAAGCTATCGATCAGGG............................2311.001.00---1.00-----------------------------------------
....................................................................ACTGACTGAAGAGATTGCACA.................................................................................................................................................................2111.001.00---1.00-----------------------------------------
.......................................................................................................................................................................TTTTTTTATTTTTAAATTGATA.............................................................221.000.00--1.00------------------------------------------
........................................................................................................ACAGAGACGTAGTACAT.................................................................................................................................1711.001.00-------------------------------------------1.00-
...................................................................................................................................................................................TAAATTTATATTTTATTTCAGCAAAACAAGCTA......................................3311.001.00--1.00------------------------------------------
..........................................................................................................AGAGACGTAGTACATTTCTTA...........................................................................................................................2111.001.001.00--------------------------------------------
...............................................................................................................................................................................................................AGCTATCGATCAGGGAAGATC......................2111.001.00--------------1.00------------------------------
.............................................AGTGGAGTTCTTTTTTTC...........................................................................................................................................................................................1820.500.50--------------------------------------------0.50
................................................................TGATACTGACTGAAG...........................................................................................................................................................................1560.170.17---------0.17-----------------------------------
..................................................................ATACTGACTGAAGAG.........................................................................................................................................................................1570.140.14------------------0.14--------------------------
.....................................................................................................................................................................TGTTTTTTTATTTTTAAAT..................................................................1990.110.11----------0.11----------------------------------
...........................................................................................................................................................TAACCTAATTTGTTTT...............................................................................1690.110.11--0.11------------------------------------------

Antisense strand
AATGCACCTGGCATATGGTTGTGTCCTTTAATTCCCTTTCAATCTAGTGGAGTTCTTTTTTTCATGATACTGACTGAAGAGATTGCACAGTTTTGGTTTTAAGTACAGAGACGTAGTACATTTCTTAATAATAAATGTTTAACTTTTGTGTGTTTTAACCTAATTTGTTTTTTTATTTTTAAATTTATATTTTATTTCAGCAAAACAAGCTATCGATCAGGGAAGATCTCCAGTTATAATAGATAACACT
..............................................................................((((..(((.((((..((((..(((((((.(((.((...((((((.........))))))...)).))).))))))).)))).)))))))..))))............................................................................
...........................................................60...................................................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR343335GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR040018(GSM532903)
G701N. (cervix)
..........................................................................................................................................TTAACTTTTGTGTGTTTTCTG........................................................................................... 211.000.00------------1.00--------------------------------
............................................................................................................................................................AACCTAATTTGTTTTCTAA........................................................................... 191.000.00--1.00------------------------------------------
.................................................GAGTTCTTTTTTTCATGATG..................................................................................................................................................................................... 201.000.00---------1.00-----------------------------------
.....ACCTGGCATATGGTTGTCTG................................................................................................................................................................................................................................. 201.000.00------------1.00--------------------------------
.....................................................................................................................................................................TGTTTTTTTATTTTTAAAGAA................................................................ 211.000.00------------------------1.00--------------------