ID: uc010aal.2_intron_0_0_chr13_27333980_r.5p
GENE: (1)
chr13:27334516-27334765-


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(1)
AGO2.ip
(2)
BRAIN
(10)
BREAST
(11)
CELL-LINE
(12)
CERVIX
(1)
HELA
(1)
LIVER
(1)
OTHER
(19)
SKIN
(1)
TESTES

Sense strand
CACGCGCTTCGGAAGCACCGGAGGAGCCCCCTCGGCCTGGGCGAGCCAAGGTGACCCCCTCGATGACCCCCCCGCCCCCGCGGGCCGCCTGTCCCCGCACCCTGTCTGTCCCCCTCGCGTCCGACTCCCGTCCCCGCCGCCAGGGAATCGGCAGCAGTGCATGGGCATCTGTCTGTCTGTCTGTCTCGGTACTTCCATTGCACACACCTCCCTCTCGTGGCCCTCCCGACTGCCCCGTGCGCACGGGGGG
................................................................(((...(((((....))))).....(((((..((((.(((.(((...((((.(((...(((....))).....))).))))...))))))..))))..)))))...))).............................................................................
..............................................................63...............................................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
SRR189782SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040034(GSM532919)
G001N. (cervix)
SRR040018(GSM532903)
G701N. (cervix)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
GSM532883(GSM532883)
G871N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040025(GSM532910)
G613T. (cervix)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR040024(GSM532909)
G613N. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR191490(GSM715600)
15genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................................................GCAGTGCATGGGCATATAC..............................................................................1918.000.0016.00-------------------------------1.00----------------1.00---------
.........................................................................................................................................................GCAGTGCATGGGCATATAG..............................................................................195.000.004.00-----1.00----------------------------------------------------
.........................................................................................................................................................GCAGTGCATGGGCATATAA..............................................................................194.000.004.00----------------------------------------------------------
...................................................................CCCCCCGCCCCCGCGTC......................................................................................................................................................................174.000.00----1.00----------------1.00---1.00---------------1.00-----------------
.........................................................................................................................................................GCAGTGCATGGGCATATAT..............................................................................194.000.003.00--------------------------------------------1.00-------------
...................................................................CCCCCCGCCCCCGCGTCC.....................................................................................................................................................................183.000.00--------------1.00-------------1.00----1.00-------------------------
...................................................................................GCCGCCTGTCCCCGCCGG.....................................................................................................................................................182.000.00-----2.00-----------------------------------------------------
.....................................................................................................................................................................CATCTGTCTGTCTGTCTGTACCC..............................................................231.000.00----------------------------------1.00------------------------
..........................................................................CCCCCGCGGGCCGCCGCGG.............................................................................................................................................................191.000.00----1.00------------------------------------------------------
..................................................................CCCCCCCGCCCCCGCGTCC.....................................................................................................................................................................191.000.00----------------------------------------------1.00------------
...................................................................CCCCCCGCCCCCGCGTCCC....................................................................................................................................................................191.000.00----1.00------------------------------------------------------
..................................................................CCCCCCCGCCCCCGCGGTT.....................................................................................................................................................................191.000.00--1.00--------------------------------------------------------
....................................................................................................................................................CGGCAGCAGTGCATGGATTG..................................................................................201.000.00------1.00----------------------------------------------------
.....................................................................CCCCGCCCCCGCGGGAG....................................................................................................................................................................171.000.00--1.00--------------------------------------------------------
.........................................................................................................................................................GCAGTGCATGGGCATTGAC..............................................................................191.000.00------1.00----------------------------------------------------
...................................................................CCCCCCGCCCCCGCGGACGC...................................................................................................................................................................201.000.00-------1.00---------------------------------------------------
.........................................................................................................................................................GCAGTGCATGGGCATATTA..............................................................................191.000.001.00----------------------------------------------------------
................................................................GACCCCCCCGCCCCCGGGC.......................................................................................................................................................................191.000.00----------1.00------------------------------------------------
.........................................................................................................................................................GCAGTGCATGGGCATATTT..............................................................................191.000.00---------------------------1.00-------------------------------
...................................................................................GCCGCCTGTCCCCGCCCC.....................................................................................................................................................181.000.00-------------1.00---------------------------------------------
.........................................................................................................................................................GCAGTGCATGGGCATATA...............................................................................181.000.001.00----------------------------------------------------------
................................................................................CGGGCCGCCTGTCCCCGCCGG.....................................................................................................................................................211.000.00------------------1.00----------------------------------------
..........................................................................................................................................................................................CGGTACTTCCATTGCACACACCTCC.......................................2511.001.00------------------------------------------1.00----------------
............................................................CGATGACCCCCCCGCGG.............................................................................................................................................................................171.000.00-----------------1.00-----------------------------------------
...................................................................CCCCCCGCCCCCGCGGGG.....................................................................................................................................................................181.000.00-------------------1.00---------------------------------------
.....................................................................................................................................................................CATCTGTCTGTCTGTCGAA..................................................................191.000.00--------------------------1.00--------------------------------
.........................................................................................................................................................GCAGTGCATGGGCATATC...............................................................................181.000.00-------------------------------------1.00---------------------
.....................................................................CCCCGCCCCCGCGGGCGCG..................................................................................................................................................................191.000.00--1.00--------------------------------------------------------
..................................................................CCCCCCCGCCCCCGCGGGGG....................................................................................................................................................................201.000.00--1.00--------------------------------------------------------
..........................................................................................................................................................CAGTGCATGGGCATCTACAC............................................................................201.000.00----------------------------------------1.00------------------
............................................................................................CCCCGCACCCTGTCT...............................................................................................................................................1530.330.33-----------------------------------------------------0.33-----
....................................................................................................................................................................................................................TCTCGTGGCCCTCCC.......................1540.250.25-------------------------------------------------------0.25---

Antisense strand
CACGCGCTTCGGAAGCACCGGAGGAGCCCCCTCGGCCTGGGCGAGCCAAGGTGACCCCCTCGATGACCCCCCCGCCCCCGCGGGCCGCCTGTCCCCGCACCCTGTCTGTCCCCCTCGCGTCCGACTCCCGTCCCCGCCGCCAGGGAATCGGCAGCAGTGCATGGGCATCTGTCTGTCTGTCTGTCTCGGTACTTCCATTGCACACACCTCCCTCTCGTGGCCCTCCCGACTGCCCCGTGCGCACGGGGGG
................................................................(((...(((((....))))).....(((((..((((.(((.(((...((((.(((...(((....))).....))).))))...))))))..))))..)))))...))).............................................................................
..............................................................63...............................................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
SRR189782SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040034(GSM532919)
G001N. (cervix)
SRR040018(GSM532903)
G701N. (cervix)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
GSM532883(GSM532883)
G871N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040025(GSM532910)
G613T. (cervix)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR040024(GSM532909)
G613N. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR191490(GSM715600)
15genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................GCGGGGGCGGGGGGG......................................................................................................................................................................... 15013.0013.00-13.00---------------------------------------------------------
..................................................................CCCCCCCGCCCCCGCGGGG..................................................................................................................................................................... 194.000.00--1.00---------1.00-----------------1.00--------1.00-------------------
..................................................................CCCCCCCGCCCCCGCGGGGG.................................................................................................................................................................... 203.000.00-----------2.00-----------1.00-----------------------------------
......................................................................................................................................CGCCGCCAGGGAATCGCAC................................................................................................. 193.000.00---------1.00-------------------1.00-----------------1.00-----------
.................................................................................................................................GTCCCCGCCGCCAGGGACGG..................................................................................................... 202.000.00---1.00--------1.00----------------------------------------------
................................................................GACCCCCCCGCCCCCTGT........................................................................................................................................................................ 182.000.00----------------------1.00---------------1.00--------------------
.....................................................................CCCCGCCCCCGCGGGCTGC.................................................................................................................................................................. 192.000.00---2.00-------------------------------------------------------
...................................................................CCCCCCGCCCCCGCGGGA..................................................................................................................................................................... 182.000.00--1.00----1.00---------------------------------------------------
...........................................................................................................GTCCCCCTCGCGTCCTTT............................................................................................................................. 181.000.00---------1.00-------------------------------------------------
......................................................................CCCGCCCCCGCGGGCTGGA................................................................................................................................................................. 191.000.00-----1.00-----------------------------------------------------
.......................................................................................................................................................GATGCCCATGCACTGCTG................................................................................. 1811.001.00---------------------------------------------------1.00-------
...................................................................CCCCCCGCCCCCGCGGGTGGG.................................................................................................................................................................. 211.000.00--------------------------------------------------1.00--------
.................................................................GCGGGGGCGGGGGGGT......................................................................................................................................................................... 1601.001.00-1.00---------------------------------------------------------
..............................................................................................................................CCCGTCCCCGCCGCCAGGGACA...................................................................................................... 221.000.00-----------------------------------1.00-----------------------
......................................................................................................................................CGCCGCCAGGGAATCGCATA................................................................................................ 201.000.00-------------------------------1.00---------------------------
......................................................................................................................................CGCCGCCAGGGAATCCA................................................................................................... 171.000.00--------1.00--------------------------------------------------
..................................................................CCCCCCCGCCCCCGCGGGGGC................................................................................................................................................................... 211.000.00----------------------------------------------------1.00------
.....................................................................CCCCGCCCCCGCGGGTGG................................................................................................................................................................... 181.000.00------------------------------------------------1.00----------
...............................................................TGACCCCCCCGCCCCCGATG....................................................................................................................................................................... 201.000.00--------1.00--------------------------------------------------
...........................................................................................................................ACTCCCGTCCCCGCCTTTA............................................................................................................ 191.000.00--------------------1.00--------------------------------------
...................................................................................................CCCTGTCTGTCCCCCAGAG.................................................................................................................................... 191.000.00----------1.00------------------------------------------------
......................................................................CCCGCCCCCGCGGGCTCG.................................................................................................................................................................. 181.000.00----------------1.00------------------------------------------
...................................................................CCCCCCGCCCCCGCGGGTA.................................................................................................................................................................... 191.000.00------------------------------------1.00----------------------
..................................................................CCCCCCCGCCCCCGCGGGCG.................................................................................................................................................................... 201.000.00---------------1.00-------------------------------------------
......................................................................................................................................CGCCGCCAGGGAATCGCTA................................................................................................. 191.000.00-------------------------------------------1.00---------------
.........................................................................................................................................................................................................................TGGCCCTCCCGACTGTAG............... 181.000.00--------------------------------------------1.00--------------
..................................................................CCCCCCCGCCCCCGCGGGCCGG.................................................................................................................................................................. 221.000.00------------------------1.00----------------------------------
.............................................................................................................CCCCCTCGCGTCCGAT............................................................................................................................. 161.000.00--1.00--------------------------------------------------------
...................................................................CCCGCGGGGGCGGGGGG...................................................................................................................................................................... 1730.330.33------------------------------------------------------0.33----
....................................................................GCCCGCGGGGGCGGGGG..................................................................................................................................................................... 1750.200.20-------0.20---------------------------------------------------
..................................................................................................GGGGGACAGACAGGGT........................................................................................................................................ 1650.200.20--------------------------------------------------------0.20--
....................................................................CCCCCGCCCCCGCGGGAGCG.................................................................................................................................................................. 200.110.00---------------------------------------------------------0.11-
....................................................................CCCGCGGGGGCGGGGG...................................................................................................................................................................... 1690.110.11----------------------------------------------------------0.11