ID: uc009zwc.2_intron_52_0_chr12_112688939_r.3p
GENE: (16)
chr12:112688889-112689138-


(2)
AGO1.ip 		(3)
AGO2.ip 		(4)
B-CELL 		(2)
BRAIN 		(6)
BREAST 		(16)
CELL-LINE 		(6)
HEART 		(5)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(2)
OTHER 		(22)
SKIN 		(1)
UTERUS

Sense strand
TGTGTTGAGACTTCACTCTGGTCATTCCAGTGCCACCATCTAGTCATGATTTGGGTGCTGTACCTGTGTCCCCTAGCAGTGATACTCGATGCTGCTCTGTAGAACCCTGTGGTTGGGGACAGTGCAGTGTGGGGCAGCACAGGTAGCAGCCTCTGCCAGTGTACACTGACCAGTGTGGTTTACCCCTGTCTGCATTGTAGGAGTCTTCGGAGGATGTCTCAGGAGGCTTGCCCTTTCTGGTAGACCTGGC
........................................................(((((((((((((((((....((.....))..(((((((.((((....(((.......))).)))).)))))))))))..))))))))).))))..(((.(((((((.((.((((.....)))).......)).))))))))))..................................................
.......................................................56..............................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189782GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................................................................................................................................................TTTACCCCTGTCTGCATTGTAGT.................................................23152.0035.0018.006.00--3.001.00--3.002.002.00-1.001.001.002.00----1.00--1.00---1.00--1.00-1.001.00-------1.00------1.001.00---------1.00-1.00-1.00---------
..................................................................................................................................................................................TTTACCCCTGTCTGCATTGTAG..................................................22135.0035.00-1.00-6.001.005.001.00-----1.001.00-----1.00-1.00-1.00-2.00--1.001.00-------1.00--1.00-1.00--1.00-----1.00-1.00--1.00---1.00-1.00--1.001.001.00-----
..................................................................................................................................................................................TTTACCCCTGTCTGCATTGTAGTATC..............................................2618.0035.00--8.00----------------------------------------------------------------------
.............................................................................................................................AGTGTGGGGCAGCACAGGTAGCAGCCTCTGCCAGTGTACACTGACCAGTGTGGTTTACCCCTGTCTGCATTGTAG..................................................7514.004.00-------4.00-----------------------------------------------------------------
..................................................................................................................................................................................TTTACCCCTGTCTGCATTGTAGA.................................................2314.0035.00----1.00----1.00----1.00------1.00---------------------------------------------------
..................................................................................................................................................................................TTTACCCCTGTCTGCATTGTA...................................................2113.003.00------1.00----------2.00-------------------------------------------------------
..................................................................................................................................................................................TTTACCCCTGTCTGCATTGTAGC.................................................2313.0035.00--------------------1.00-2.00--------------------------------------------------
..................................................................................................................................................................................TTTACCCCTGTCTGCATTGT....................................................2012.002.00-2.00-----------------------------------------------------------------------
..............................................................................................................................................................................................TGCATTGTAGGAGTCTTCGGA.......................................2112.002.00------------------------2.00------------------------------------------------
..................................................................................................................................................................................TTTACCCCTGTCTGCATT......................................................1812.002.00------2.00------------------------------------------------------------------
.....................................................................................................................................................................................ACCCCTGTCTGCATTGTAGA.................................................202.000.00-----------2.00-------------------------------------------------------------
.................................................................................................................................................................................................................GAGGATGTCTCAGGAGGC.......................1811.001.00----------------------------------------------------------------1.00--------
.................................................................................................................................................................................................................GAGGATGTCTCAGGAGGATTT....................211.000.00----------------------------------1.00--------------------------------------
............................................................TACCTGTGTCCCCTACAGG...........................................................................................................................................................................191.000.00------------------1.00------------------------------------------------------
.............................................................................................GCTCTGTAGAACCCTG.............................................................................................................................................1611.001.00-------------------------------------------1.00-----------------------------
.....................................................................................................................................................................CTGACCAGTGTGGTTTACCCCTGTCT...........................................................2611.001.00--------------------------1.00----------------------------------------------
.........................................................................................................................................................................................CTGTCTGCATTGTAGGAGTCTTCGGAGGATG..................................3111.001.00--------------------------------------1.00----------------------------------
...............................................................................................................GTTGGGGACAGTGCATGA.........................................................................................................................181.000.00----------------1.00--------------------------------------------------------
...............................................................................................................................................TAGCAGCCTCTGCCATCA.........................................................................................181.000.00----------------------------------------------------1.00--------------------
.......................................................................................................................................................................................CCCTGTCTGCATTGTAGGAG...............................................2011.001.00-------------------------------------------------------1.00-----------------
...................................................................................................................................................................................................TGTAGGAGTCTTCGGAGGATGTCTCAG............................2711.001.00-----------------------------------------------1.00-------------------------
.................................................................................................................................................................................GTTTACCCCTGTCTGCATTGTAA..................................................231.000.00------------------------------------1.00------------------------------------
............................................................................................................................................................................................................CTTCGGAGGATGTCTCAGG...........................1911.001.00----------------------------------------------1.00--------------------------
...........................................................................................................................................................................................................TCTTCGGAGGATGTCTCAGGAGGCTTGCC..................2911.001.00--------------------------------------------1.00----------------------------
....................................................................................................................................................................................TACCCCTGTCTGCATTGTAG..................................................2011.001.00-------------------1.00-----------------------------------------------------
...........................................................................................................................................................................AGTGTGGTTTACCCCTGTCTGCATTGTAG..................................................2911.001.00---------------------------------------1.00---------------------------------
...................................................TGGGTGCTGTACCTGTGTCCCCTAGCAGT..........................................................................................................................................................................2911.001.00------------------1.00------------------------------------------------------
...............................................................................................................................TGTGGGGCAGCACAGGCAGC.......................................................................................................201.000.00--------------------------------------------------1.00----------------------
..................................................................................................................................................................................................................AGGATGTCTCAGGAGGCTTGCC..................2211.001.00----1.00--------------------------------------------------------------------
..................................................................................................................................................................................................................AGGATGTCTCAGGAGGCTTG....................2011.001.00---------------------------------------------------------1.00---------------
....................................................................................................................................................................................TACCCCTGTCTGCATTGTAT..................................................201.000.00---1.00---------------------------------------------------------------------
...................................................................................................................................................................................TTACCCCTGTCTGCATT......................................................1711.001.00-----------------------------------1.00-------------------------------------
............................................................................................................................................................................................................................AGGAGGCTTGCCCTTT..............1620.500.50--------------------------------------------------------------------0.50----
..............................................................................................................GGTTGGGGACAGTGCA............................................................................................................................1640.500.50---------------------------------------------------------------------0.25--0.25
........................................................................................................................................................................................................................TCTCAGGAGGCTTGCC..................1630.330.33---0.33---------------------------------------------------------------------
..............................................................................................................GGTTGGGGACAGTGCATG..........................................................................................................................1840.250.50----------------------------------------------------------------------0.25--
..............................................................................................................GGTTGGGGACAGTGCATGG.........................................................................................................................1940.250.50-----------------------------------------------------------------------0.25-

Antisense strand
TGTGTTGAGACTTCACTCTGGTCATTCCAGTGCCACCATCTAGTCATGATTTGGGTGCTGTACCTGTGTCCCCTAGCAGTGATACTCGATGCTGCTCTGTAGAACCCTGTGGTTGGGGACAGTGCAGTGTGGGGCAGCACAGGTAGCAGCCTCTGCCAGTGTACACTGACCAGTGTGGTTTACCCCTGTCTGCATTGTAGGAGTCTTCGGAGGATGTCTCAGGAGGCTTGCCCTTTCTGGTAGACCTGGC
........................................................(((((((((((((((((....((.....))..(((((((.((((....(((.......))).)))).)))))))))))..))))))))).))))..(((.(((((((.((.((((.....)))).......)).))))))))))..................................................
.......................................................56..............................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189782GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.................................................................................................................................................................................................................................GCTTGCCCTTTCTGGTTGA...... 191.000.00----------------------------------------------------------1.00--------------
..........................................................................................GCTGCTCTGTAGAACGATC............................................................................................................................................. 191.000.00----------------1.00--------------------------------------------------------
....................................................................................................AGAACCCTGTGGTTGTAG.................................................................................................................................... 181.000.00-------------------------------1.00-----------------------------------------
..................................................................................................GTAGAACCCTGTGGTCACC..................................................................................................................................... 191.000.00------------------------------------------------------1.00------------------
.............................................................CTAGGGGACACAGGT.............................................................................................................................................................................. 1590.110.11---------------------------------------------------------------------0.11---