ID: uc009zsp.2_intron_1_0_chr12_89819157_r.5p
GENE: (9)
chr12:89853215-89853464-


(2)
BREAST
(7)
CELL-LINE
(1)
FIBROBLAST
(2)
OTHER
(3)
SKIN

Sense strand
AGATCTCTACTCCCCCTGTTATGGATATCCTTTCTTTTGATTCTACCACAGTAAGTCGGGTTTTTTTTTTTTTTTTTGACACTTAAGTGGCATTTAATCATTTGGCATAATCCATTTTCCTTTAAAAAATGTTGGGGGAGGAGATAAAACGTGGCCTATGTAGCCTAACATTTTAGTATAGGAAAAACTTTATAGTCATATTTACAATGCATCTAAATAGTTTACCACAAGGGGGGAGCAGCAACAATTT
..................................................(((.((((.(((((..((((((((((..(((.((((((((.(((...((....))...))))))))).........)).)))..)))))))))).))))).)))).)))...........................................................................................
..................................................51..............................................................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189783SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................TCGGGTTTTTTTTTTTTTTTTTTC...........................................................................................................................................................................243.000.001.002.00-------------
........................................................CGGGTTTTTTTTTTTTTTTTTTTTC.........................................................................................................................................................................253.000.003.00--------------
.......................................................TCGGGTTTTTTTTTTTTTTTTGTC...........................................................................................................................................................................243.000.002.001.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTTTGCC..........................................................................................................................................................................253.000.002.001.00-------------
........................................................CGGGTTTTTTTTTTTTATAT..............................................................................................................................................................................202.000.00----2.00----------
.......................................................TCGGGTTTTTTTTTTTTTTTTTTAA..........................................................................................................................................................................252.000.001.001.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTTTA............................................................................................................................................................................232.000.001.001.00-------------
............................................................TTTTTTTTTTTTTTTTTGACACTTGCC...................................................................................................................................................................272.000.001.001.00-------------
........................................................CGGGTTTTTTTTTTTTTTTTTTTC..........................................................................................................................................................................242.000.001.00-------1.00------
.......................................................TCGGGTTTTTTTTTTTTTTTTTGAGAC........................................................................................................................................................................272.000.00-2.00-------------
........................................................CGGGTTTTTTTTTTTTTTTTTTGG..........................................................................................................................................................................242.000.002.00--------------
.......................................................TCGGGTTTTTTTTTTTTTTGTC.............................................................................................................................................................................222.000.001.001.00-------------
........................................................CGGGTTTTTTTTTTTTTTGAGG............................................................................................................................................................................221.000.00-1.00-------------
.............................................................TTTTTTTTTTTTTTTTGACACTTGC....................................................................................................................................................................251.000.001.00--------------
................................................................TTTTTTTTTTTTTGACACCGAC....................................................................................................................................................................221.000.001.00--------------
..........................................................GGTTTTTTTTTTTTTTTTTGACTGTC......................................................................................................................................................................261.000.001.00--------------
.......................................................TCGGGTTTTTTTTTTTTTGGAT.............................................................................................................................................................................221.000.00-----1.00---------
........................................................CGGGTTTTTTTTTTTTTTTTTGCC..........................................................................................................................................................................241.000.001.00--------------
.GATCTCTACTCCCCCGACC......................................................................................................................................................................................................................................191.000.00----------1.00----
.......................................................TCGGGTTTTTTTTTTTTTCACG.............................................................................................................................................................................221.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTTTTGGC.........................................................................................................................................................................261.000.001.00--------------
.......................................................TCGGGTTTTTTTTTTTTTTTTTAC...........................................................................................................................................................................241.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTGGAG...........................................................................................................................................................................241.000.001.00--------------
....................................................AAGTCGGGTTTTTTTTTTTTTCTTT.............................................................................................................................................................................251.000.00-1.00-------------
.............................................................................................................................................AGATAAAACGTGGCCTATGTAGC......................................................................................2311.001.00------1.00--------
.......................................................TCGGGTTTTTTTTTTTTTTAAGG............................................................................................................................................................................231.000.001.00--------------
..................................................................TTTTTTTTTTTGACACTTGCC...................................................................................................................................................................211.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTTTTAC..........................................................................................................................................................................251.000.001.00--------------
........................................................CGGGTTTTTTTTTTTTTTTTATAC..........................................................................................................................................................................241.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTCGTT...........................................................................................................................................................................241.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTTGC............................................................................................................................................................................231.000.00-1.00-------------
........................................................CGGGTTTTTTTTTTTTTTTTTCGC..........................................................................................................................................................................241.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTGTCT...........................................................................................................................................................................241.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTGCCG............................................................................................................................................................................231.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTCTC............................................................................................................................................................................231.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTTTAGTC.........................................................................................................................................................................261.000.001.00--------------
.......................................................TCGGGTTTTTTTTTTTTTTGAA.............................................................................................................................................................................221.000.00-1.00-------------
....................................................................................................................................TGGGGGAGGAGATAAAAGAGC.................................................................................................211.000.00---1.00-----------
.......................................................TCGGGTTTTTTTTTTTTTTTAGTC...........................................................................................................................................................................241.000.001.00--------------
........................................................CGGGTTTTTTTTTTTTTTTTGCC...........................................................................................................................................................................231.000.001.00--------------
.......................................................TCGGGTTTTTTTTTTTTTTTCTGC...........................................................................................................................................................................241.000.001.00--------------
.......................................................TCGGGTTTTTTTTTTTTTTGTT.............................................................................................................................................................................221.000.00-1.00-------------
.........................................................GGGTTTTTTTTTTTTTTTTTGAATG........................................................................................................................................................................251.000.00-1.00-------------
................................................................................................................................ATGTTGGGGGAGGAGTTG........................................................................................................181.000.00-------------1.00-
.......................................................TCGGGTTTTTTTTTTTTTTTTTAA...........................................................................................................................................................................241.000.00-1.00-------------
........................................................CGGGTTTTTTTTTTTTTTTTTTAC..........................................................................................................................................................................241.000.001.00--------------
.......................................................TCGGGTTTTTTTTTTTTTTTTTACTT.........................................................................................................................................................................261.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTTGTTC..........................................................................................................................................................................251.000.001.00--------------
........................................................CGGGTTTTTTTTTTTTTTTTTCCCC.........................................................................................................................................................................251.000.001.00--------------
....................................................AAGTCGGGTTTTTTTTTTTTTTTCTG............................................................................................................................................................................261.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTTTAAAT.........................................................................................................................................................................261.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTTTTTGA.........................................................................................................................................................................261.000.001.00--------------
........................................................CGGGTTTTTTTTTTTTTTTTTCTTC.........................................................................................................................................................................251.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTCTGC...............................................................................................................................................................................201.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTTCCCC..........................................................................................................................................................................251.000.001.00--------------
.......................................................TCGGGTTTTTTTTTTTTTTTTGG............................................................................................................................................................................231.000.001.00--------------
.......................................................TCGGGTTTTTTTTTTTTTTTTCAC...........................................................................................................................................................................241.000.001.00--------------
..............................................................TTTTTTTTTTTTTTTGACACTTGCC...................................................................................................................................................................251.000.001.00--------------
.......................................................TCGGGTTTTTTTTTTTTTTTGTA............................................................................................................................................................................231.000.001.00--------------
.......................................................TCGGGTTTTTTTTTTTTTTTTTGC...........................................................................................................................................................................241.000.00-1.00-------------
.............................................................TTTTTTTTTTTTTTTTGACACTTGCC...................................................................................................................................................................261.000.00-1.00-------------
............................................................................................................................................................................................................................TTTACCACAAGGGGGGAGCAGC........2211.001.00-------1.00-------
.......................................................TCGGGTTTTTTTTTTTTTTTTTTTCC.........................................................................................................................................................................261.000.001.00--------------
.......................................................TCGGGTTTTTTTTTTTTTTTTGGGC..........................................................................................................................................................................251.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTTTTA...........................................................................................................................................................................241.000.001.00--------------
.......................................................TCGGGTTTTTTTTTTTTTTTTGT............................................................................................................................................................................231.000.00-1.00-------------
.....................................................AGTCGGGTTTTTTTTTTTTTTTTTTGCC.........................................................................................................................................................................281.000.001.00--------------
.......................................................TCGGGTTTTTTTTTTTTTTTTTTTC..........................................................................................................................................................................251.000.00-1.00-------------
.......................................................TCGGGTTTTTTTTTTTTTTTTTGGACC........................................................................................................................................................................271.000.001.00--------------
.......................................................TCGGGTTTTTTTTTTTTTTTTAGAC..........................................................................................................................................................................251.000.001.00--------------
...................................................TAAGTCGGGTTTTTTTTTTTTTTTTTGAC..........................................................................................................................................................................2911.001.001.00--------------
................................................................TTTTTTTTTTTTTGACACTTGCCT..................................................................................................................................................................241.000.00-1.00-------------
........................................................CGGGTTTTTTTTTTTTTTTTGGAG..........................................................................................................................................................................241.000.00-1.00-------------
........................................................CGGGTTTTTTTTTTTTTTTTTCTCT.........................................................................................................................................................................251.000.001.00--------------

Antisense strand
AGATCTCTACTCCCCCTGTTATGGATATCCTTTCTTTTGATTCTACCACAGTAAGTCGGGTTTTTTTTTTTTTTTTTGACACTTAAGTGGCATTTAATCATTTGGCATAATCCATTTTCCTTTAAAAAATGTTGGGGGAGGAGATAAAACGTGGCCTATGTAGCCTAACATTTTAGTATAGGAAAAACTTTATAGTCATATTTACAATGCATCTAAATAGTTTACCACAAGGGGGGAGCAGCAACAATTT
..................................................(((.((((.(((((..((((((((((..(((.((((((((.(((...((....))...))))))))).........)).)))..)))))))))).))))).)))).)))...........................................................................................
..................................................51..............................................................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189783SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................CGGGTTTTTTTTTTTTTTTTTTTTT......................................................................................................................................................................... 252.000.00--2.00------------
........................................................CGGGTTTTTTTTTTTTTTTTTTGT.......................................................................................................................................................................... 242.000.00--2.00------------
........................................................CGGGTTTTTTTTTTTTTTTCCG............................................................................................................................................................................ 221.000.00------------1.00--
...............................................................TTTTTTTTTTTTTTGACACCTTT.................................................................................................................................................................... 231.000.00-----1.00---------
........................................................CGGGTTTTTTTTTTTTTTTTGAG........................................................................................................................................................................... 231.000.00---1.00-----------
.............................................................TTTTTTTTTTTTTTTTGACACTTT..................................................................................................................................................................... 241.000.00-----------1.00---
............................GTAGAATCAAAAGAAAGG............................................................................................................................................................................................................ 1830.330.33--------------0.33