ID: uc009zoz.1_intron_3_0_chr12_57140639_r.3p
GENE: (2)
chr12:57140589-57140838-


(5)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(14)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(3)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GATCAATATTTTGTATCTGTAGCCCAATCAACACAATACAGTGAAGCTGGGAGCTTTCCAGGCTCAGGAAAAAGAACTGGTATTTGACATTGACATGACAGACTATGACGATGTGAGGAGATGTTGTAGGTGAGCACTGTGTGTCTTGCTGTTAGGGTGGGTGGTATCACTGACAATGAGTAATGATGACTCTGCTTTAGTTCTGCAGACATATGTCCTAAGTGCTGGACCCTCATGACAATGGCCATAC
..................................................................................................................(((.(((.(((((.((..(((((...))).))..)).(((..((.((((....)))).))..)))......)))))))).))).....................................................
...........................................................................................................108.........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR343336SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR343337SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191555(GSM715665)
195genomic small RNA (size selected RNA from . (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM956925PAZD5SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR040008(GSM532893)
G727N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
................................................................................................................GTGAGGAGATGTTGTAG.........................................................................................................................17115.0015.00-7.00---2.00-1.00--------------1.001.001.00-1.00----1.00------------
.....................................................................................................................................................................................AATGATGACTCTGCTTTAGA.................................................20110.007.009.00---------------------------------------1.00---
.....................................................................................................................................................................................AATGATGACTCTGCTTTAG..................................................1917.007.006.00------1.00------------------------------------
.......................CCAATCAACACAATACAGA................................................................................................................................................................................................................196.000.00----4.00----2.00----------------------------------
................................................................................................GACAGACTATGACGATGTG.......................................................................................................................................1913.003.003.00-------------------------------------------
.................................................................AGGAAAAAGAACTGGTATT......................................................................................................................................................................1922.502.50---1.00----1.50-----------------------------------
............................................................................................ACATGACAGACTATGACGA...........................................................................................................................................1912.002.00------------2.00-------------------------------
.....................................................................................................................................................................................AATGATGACTCTGCTTTAGAA................................................2112.007.00-----2.00--------------------------------------
....................................TACAGTGAAGCTGGGAGCTTTCCAGGC...........................................................................................................................................................................................2712.002.00--2.00-----------------------------------------
..........................................................................AACTGGTATTTGACATTGAC............................................................................................................................................................2012.002.00----------1.00---------1.00-----------------------
..............................................................................................................ATGTGAGGAGATGTTGTAGTT.......................................................................................................................2112.001.00------2.00-------------------------------------
.........................................................................................................TGACGATGTGAGGAGATGTTGTAGT........................................................................................................................2511.001.00--1.00-----------------------------------------
..................................................................................................................GAGGAGATGTTGTAGGTG......................................................................................................................1811.001.00--------------------------------------1.00-----
..............................................................................GGTATTTGACATTGACATGACAGA....................................................................................................................................................2411.001.00------------------1.00-------------------------
...............................................................................................................TGTGAGGAGATGTTGTAGT........................................................................................................................1911.001.00---1.00----------------------------------------
...........................................................................................................ACGATGTGAGGAGATGTTGTAGTT.......................................................................................................................241.000.00--------------1.00-----------------------------
.....................................................................AAAAGAACTGGTATTTGA...................................................................................................................................................................1811.001.00---1.00----------------------------------------
.................................................................................................................................GTGAGCACTGTGTGTCTTGCTGTTAGGGTGGGTGGTATCACTGACAATGAGTAATGATGACTCTGCTTTAG..................................................7111.001.00-------------1.00------------------------------
.................................................................................................................................................................................................................................TGGACCCTCATGACAATGGC.....2011.001.00---1.00----------------------------------------
..........................................................................................TGACATGACAGACTATGACGATGTGA......................................................................................................................................2611.001.00--------------------------------1.00-----------
...............................................................................................................TGTGAGGAGATGTTGTAG.........................................................................................................................1811.001.00---------------------------------1.00----------
.......................................................................AAGAACTGGTATTTGACA.................................................................................................................................................................1811.001.00------------------------------1.00-------------
.................................................................AGGAAAAAGAACTGGTATTTGA...................................................................................................................................................................2211.001.00---------------------------------------1.00----
............................................................................................................CGATGTGAGGAGATGTTGTAG.........................................................................................................................2111.001.001.00-------------------------------------------
....................................................................AAAAAGAACTGGTATTTGACATTGACAT..........................................................................................................................................................2811.001.00-----------1.00--------------------------------
....................................................................AAAAAGAACTGGTATTTGACATT...............................................................................................................................................................2311.001.00----------------1.00---------------------------
.................................................................................................................TGAGGAGATGTTGTAGTT.......................................................................................................................181.000.00---1.00----------------------------------------
..............................................................................................................ATGTGAGGAGATGTTGTAGTTC......................................................................................................................2211.001.00------1.00-------------------------------------
.............................................................GCTCAGGAAAAAGAACAAAG.........................................................................................................................................................................201.000.00-----------------------------------------1.00--
......................................................................................................CTATGACGATGTGAGGAGA.................................................................................................................................1911.001.00-----------------------------1.00--------------
................................................................CAGGAAAAAGAACTGGTATTTGACATT...............................................................................................................................................................2711.001.00--1.00-----------------------------------------
..............................................................................................................ATGTGAGGAGATGTTGTAG.........................................................................................................................1911.001.00--------1.00-----------------------------------
....................................................................................................................................................................................TAATGATGACTCTGCTTTAGA.................................................211.000.001.00-------------------------------------------
...................................................................................TTGACATTGACATGACAGACTATGA..............................................................................................................................................2511.001.00---------------1.00----------------------------
.........................................................................................................TGACGATGTGAGGAGATGTTGT...........................................................................................................................2211.001.00-----------------1.00--------------------------
.........................................................................................................................................................................................................................CTAAGTGCTGGACCCTCATGACAATGGC.....2811.001.00-----------1.00--------------------------------
......................................................................................................CTATGACGATGTGAGGAGATG...............................................................................................................................2111.001.001.00-------------------------------------------
................................................................................................GACAGACTATGACGAG..........................................................................................................................................161.000.00----------------------------------1.00---------
.............................AACACAATACAGTGAAGCTGGGAGC....................................................................................................................................................................................................2511.001.00--1.00-----------------------------------------
...........................................................................................GACATGACAGACTATGACG............................................................................................................................................1911.001.00---------------------------1.00----------------
........................................................................................................................................................TAGGGTGGGTGGTATAGG................................................................................181.000.00---------------------1.00----------------------
............................................................................................ACATGACAGACTATGACGATGTGAG.....................................................................................................................................2511.001.00-------------------------------------1.00------
.........................................................................................................TGACGATGTGAGGAGATGTTGTAG.........................................................................................................................2411.001.00--1.00-----------------------------------------
.....................................................................AAAAGAACTGGTATTTGACATTGAC............................................................................................................................................................2511.001.00----------1.00---------------------------------
.................................................................................................................TGAGGAGATGTTGTATAG.......................................................................................................................181.000.00-------------------1.00------------------------
...............................................TGGGAGCTTTCCAGGCTCAGG......................................................................................................................................................................................2120.500.50-------0.50------------------------------------
...............................................TGGGAGCTTTCCAGGCTCAGGAAAAAGAACT............................................................................................................................................................................3120.500.50------------------------------------------0.50-
........................CAATCAACACAATACAG.................................................................................................................................................................................................................1720.500.50---------0.50----------------------------------
..................................................................................................................GAGGAGATGTTGTAG.........................................................................................................................1550.200.20-------------------------------------------0.20

Antisense strand
GATCAATATTTTGTATCTGTAGCCCAATCAACACAATACAGTGAAGCTGGGAGCTTTCCAGGCTCAGGAAAAAGAACTGGTATTTGACATTGACATGACAGACTATGACGATGTGAGGAGATGTTGTAGGTGAGCACTGTGTGTCTTGCTGTTAGGGTGGGTGGTATCACTGACAATGAGTAATGATGACTCTGCTTTAGTTCTGCAGACATATGTCCTAAGTGCTGGACCCTCATGACAATGGCCATAC
..................................................................................................................(((.(((.(((((.((..(((((...))).))..)).(((..((.((((....)))).))..)))......)))))))).))).....................................................
...........................................................................................................108.........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR343336SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR343337SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191555(GSM715665)
195genomic small RNA (size selected RNA from . (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM956925PAZD5SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR040008(GSM532893)
G727N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
...............................CACAATACAGTGAAGCTCTGT...................................................................................................................................................................................................... 211.000.00----------------------------1.00---------------
..............................................................................................................................TAGGTGAGCACTGTGTGA.......................................................................................................... 181.000.00-----------------------------------1.00--------
..................................................................................................................CCTACAACATCTCCTC........................................................................................................................ 1611.001.00------------------------------------1.00-------