ID: uc009zow.1_intron_15_0_chr12_56999112_r.3p
GENE: BAZ2A(13)
chr12:56999062-56999311-


(1)
AGO1.ip
(2)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(8)
BREAST
(15)
CELL-LINE
(2)
HEART
(3)
HELA
(1)
KIDNEY
(1)
OTHER
(28)
SKIN
(1)
XRN.ip

Sense strand
ATTGCTTGGGCTTAGGAGGTCGAGGCTGCAGTAAGCAGAGATCATGCCACTGCACTCCAGCTTGGGTGACAGAGTGAGACCCTATCTCAAAAAAAAAAAAAAAATTACATAAAAATTAAAGGAAGAACCTCTTGTAGACATGCAAATTGTCATCTTCTGTTATGTTTAACAGAACTCTCTACTCACTTTTCTCTCTCTAGCCCCTGCCTGACTTCTCACGAGTCCCTGGTCTGACATTGCCCAGTGGAGC
....................................................................................................................((.((..((((.........((((.......))))...((((((((....))))))))..............))))..)).))...................................................
.......................................................................................................104.............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR189782TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038857(GSM458540)
D20. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................................................................CAGAACTCTCTACTCACTTTTCTCTCTCTAG..................................................31118.0018.00------2.001.001.00-2.001.002.00--1.001.00---------------1.00---------1.00---1.001.00---1.001.00---1.00-----
.................................................................................................................................................................................TCTACTCACTTTTCTCTCTCTAGA.................................................24112.005.007.00---1.00------------------1.00-1.00----------------------------1.00--1.00----
........................................................................................................................................................................ACAGAACTCTCTACTCACTTTTCTCTCTCTAG..................................................32110.0010.00---1.002.00---1.00-----1.00-1.00---1.00---------1.00------------1.001.00-----------------
.........................................................................................................................................................................CAGAACTCTCTACTCACTTTTCTCTCTCTAGA.................................................3219.0018.00---3.00----------------1.001.00-------1.00-----------------------1.00-1.00----1.00-
................................................................................................................................................................................CTCTACTCACTTTTCTCTCTCTAG..................................................2415.005.00--------1.00--1.00-1.00---------------------1.00----------------------1.00---
.................................................................................................................................................................................TCTACTCACTTTTCTCTCTCTAG..................................................2315.005.00------1.001.00------1.00---------1.00--------1.00----------------------------
................................................................................................................................................................................CTCTACTCACTTTTCTCTCTCTAGA.................................................2514.005.00-------------------2.00--------------------1.00---------1.00-----------
....................................AGAGATCATGCCACTGCACTATA...............................................................................................................................................................................................232.000.00----------------------1.00-------------1.00-------------------------
...............................................................................................................................................................................TCTCTACTCACTTTTCTCTCTCTAG..................................................2512.002.00-------------1.00-----------------1.00------------------------------
.......................................................................................................................................................................AACAGAACTCTCTACTCACTTTTCTCTCTCTAG..................................................3311.001.00---------------1.00----------------------------------------------
...............................................................................................................................................................................TCTCTACTCACTTTTCTCTCTCTAGA.................................................2611.002.00-----------------1.00--------------------------------------------
............................................................CTTGGGTGACAGAGTGAGACCCGTTC....................................................................................................................................................................261.000.00-1.00------------------------------------------------------------
................................................................................................................................................................................CTCTACTCACTTTTCTCTCTCTAGAA................................................2611.005.00-------1.00------------------------------------------------------
................................................................................................................................CTCTTGTAGACATGCAAATTGTCATCTTCTGTTATGTTTAACAGAACTCTCTACTCACTTTTCTCTCTCTAG..................................................7211.001.00---------------------------------------------1.00----------------
............................................................................................................ATAAAAATTAAAGGAAGAAC..........................................................................................................................2011.001.00---------------------------------------1.00----------------------
..TGCTTGGGCTTAGGAGGTCGATGC................................................................................................................................................................................................................................241.000.00--1.00-----------------------------------------------------------
................................................................................................................................................................................CTCTACTCACTTTTCTCTCTATA...................................................231.000.001.00-------------------------------------------------------------
................AGGTCGAGGCTGCAGTCAAG......................................................................................................................................................................................................................201.000.00----------------------------------1.00---------------------------
...............GAGGTCGAGGCTGCAGTAATTG.....................................................................................................................................................................................................................221.000.00---1.00----------------------------------------------------------
..........................................................................................AAAAAAAAAAAAAATTACATAACCAA......................................................................................................................................261.000.00-----------------------------------------1.00--------------------
......................................................................................................................................................................TAACAGAACTCTCTACTCACTTTTCTCTCTCTAG..................................................3411.001.00--------------------------------------1.00-----------------------
..................................................................................................................................................................................CTACTCACTTTTCTCTCTCTAG..................................................2211.001.00-----1.00--------------------------------------------------------
................................................................................................................................................................................CTCTACTCACTTTTCTCTCTCTA...................................................2311.001.001.00-------------------------------------------------------------
........................................................................................................................................................................................................CCCCTGCCTGACTTCT..................................1670.140.14-------------------------------------------------------------0.14

Antisense strand
ATTGCTTGGGCTTAGGAGGTCGAGGCTGCAGTAAGCAGAGATCATGCCACTGCACTCCAGCTTGGGTGACAGAGTGAGACCCTATCTCAAAAAAAAAAAAAAAATTACATAAAAATTAAAGGAAGAACCTCTTGTAGACATGCAAATTGTCATCTTCTGTTATGTTTAACAGAACTCTCTACTCACTTTTCTCTCTCTAGCCCCTGCCTGACTTCTCACGAGTCCCTGGTCTGACATTGCCCAGTGGAGC
....................................................................................................................((.((..((((.........((((.......))))...((((((((....))))))))..............))))..)).))...................................................
.......................................................................................................104.............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR189782TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038857(GSM458540)
D20. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
..............GGAGGTCGAGGCTGCAGTGGAC...................................................................................................................................................................................................................... 222.000.00--2.00-----------------------------------------------------------
...................................CAGAGATCATGCCACTGCGCA.................................................................................................................................................................................................. 212.000.00---------2.00----------------------------------------------------
........................................................................................AAAAAAAAAAAAAAAATTACACGGC......................................................................................................................................... 252.000.00-1.001.00-----------------------------------------------------------
.........................................................CAGCTTGGGTGACAGATCGC............................................................................................................................................................................. 201.000.00-----------------1.00--------------------------------------------
.............................................GCCACTGCACTCCAGCTTGGGC....................................................................................................................................................................................... 221.000.00------------------1.00-------------------------------------------
...........................................................GCTTGGGTGACAGAGTGAGACCCTACGG................................................................................................................................................................... 281.000.00-1.00------------------------------------------------------------
................................................................................................AAAAAAAATTACATAAATAT...................................................................................................................................... 201.000.00-------------------------------------1.00------------------------
........................................ATCATGCCACTGCACTCCAGCTGC.......................................................................................................................................................................................... 241.000.00---------------------------1.00----------------------------------
..................................GCAGAGATCATGCCACA....................................................................................................................................................................................................... 171.000.00-----1.00--------------------------------------------------------
.............................................................................GACCCTATCTCAAAAAAACTC........................................................................................................................................................ 211.000.00--1.00-----------------------------------------------------------
.....................................................................................CTCAAAAAAAAAAAAAAAATTGCTG............................................................................................................................................ 251.000.00-1.00------------------------------------------------------------
..............................................CCACTGCACTCCAGCTTGGGTGAGGCC................................................................................................................................................................................. 271.000.00-1.00------------------------------------------------------------
...................................................................................ATCTCAAAAAAAAAAAAAAAATTAAG............................................................................................................................................. 261.000.00--1.00-----------------------------------------------------------
............................................................GTCTCACTCTGTCACCCAAG.......................................................................................................................................................................... 2001.001.00------------------1.00-------------------------------------------
..............................................................................................AAAAAAAAAATTACATAGTG........................................................................................................................................ 201.000.00-----------------------------------------------------------1.00--
................................AAGCAGAGATCATGCCACTGTA.................................................................................................................................................................................................... 221.000.00------------------------------------------------1.00-------------
...................................GTGGCATGATCTCTG........................................................................................................................................................................................................ 1501.001.00-----1.00--------------------------------------------------------
..............................................CCACTGCACTCCAGCTTGGGTGACAGAGTGCG............................................................................................................................................................................ 321.000.00-1.00------------------------------------------------------------
......................................................................................................................................................................TAACAGAACTCTCTAGGG.................................................................. 181.000.00--------------------------1.00-----------------------------------
............................................................................................AAAAAAAAAAAATTACATCTTT........................................................................................................................................ 221.000.00-1.00------------------------------------------------------------
.....................................................ACTCTGTCACCCAAGCTGGAGT............................................................................................................................................................................... 2201.001.00----------------------------1.00---------------------------------
.....................................................................................CTCAAAAAAAAAAAAAAAATTCGGG............................................................................................................................................ 251.000.00-1.00------------------------------------------------------------
..........................................AAGCTGGAGTGCAGTGGCATG........................................................................................................................................................................................... 2101.001.00-------------------------------------------------1.00------------
.CCTCCTAAGCCCAAGCAA....................................................................................................................................................................................................................................... 1840.250.25---------------------0.25----------------------------------------
...............................................................................TAATTTTTTTTTTTTTTTTGAGATAGGG............................................................................................................................................... 2850.200.20--0.20-----------------------------------------------------------