ID: uc009zoo.2_intron_1_0_chr12_56547877_f.5p
GENE: (2)
chr12:56547827-56548076+


(3)
BRAIN 		(9)
BREAST 		(10)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(3)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
AGGCCCCTCAGAAAACCCAGGAGCCTCCAGTCGATCTCTCCAAAGTGGTGGTGAGTCTCTGGAAAGTGAAGATAGAATTGGAGGGGGTGGTTTGAGGGTGGGATACAGCCTAGGGGATTAGGGGGTATCTAGAAGGTAGGGAATCAGTGAGCCCTGGAATGAGATTGGGGCTTTCCCTTAGTCCCCCATTTGGAAGCATCCAGTCTTATGACTCTGCTGTTGTCTTTGCTGTTCTCTCCCTCTAACCTAT
....................................................................................................((((((..(((((....)))))..))))))........................................................................................................................
..........................................................................75...........................................................136................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782TAX577589(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................GGAGGGGGTGGTTTGATTT........................................................................................................................................................198.000.00-1.002.00-1.00--1.00--1.00-----1.00-------1.00-------------
...............................................................................GGAGGGGGTGGTTTGTTTT........................................................................................................................................................196.000.00-1.001.00--1.00-1.00-1.00------------------------1.00---
...............................................................................GGAGGGGGTGGTTTGATTTT.......................................................................................................................................................205.000.003.00----1.00------1.00-------------------------
...............................................................................GGAGGGGGTGGTTTGATTTG.......................................................................................................................................................204.000.001.00---1.00---1.00-1.00---------------------------
.................CAGGAGCCTCCAGTCGATCTCT...................................................................................................................................................................................................................2213.003.00---------------1.00---1.00-----1.00------------
...............................................................................GGAGGGGGTGGTTTGATTA........................................................................................................................................................192.000.00---1.00----------------------1.00-----------
...............................................................................GGAGGGGGTGGTTTGTGCT........................................................................................................................................................192.000.00-----1.00--------------1.00-----------------
...............................................................................GGAGGGGGTGGTTTGAGTT........................................................................................................................................................192.000.00----1.00----------------------------1.00----
...............................................................................GGAGGGGGTGGTTTGTGGT........................................................................................................................................................192.000.00---1.00----------1.00-----------------------
...............................................................................GGAGGGGGTGGTTTGAATAG.......................................................................................................................................................202.000.00------2.00-------------------------------
...............................................................................GGAGGGGGTGGTTTGTATA........................................................................................................................................................192.000.00---------1.00-----------1.00----------------
...............................................................................GGAGGGGGTGGTTTGAGTTG.......................................................................................................................................................201.000.00-----------------------------1.00--------
...............................................................................GGAGGGGGTGGTTTGATTGG.......................................................................................................................................................201.000.001.00-------------------------------------
..............................................................................................................TAGGGGATTAGGGGGTATAGTT......................................................................................................................221.000.00---------------------------1.00----------
................................................................................................................................CTAGAAGGTAGGGAATCAG.......................................................................................................1911.001.00---------------1.00----------------------
...............................................................................GGAGGGGGTGGTTTGAAAAT.......................................................................................................................................................201.000.00------1.00-------------------------------
...............................................................................GGAGGGGGTGGTTTGATT.........................................................................................................................................................181.000.00-1.00------------------------------------
...............................................................................GGAGGGGGTGGTTTGTATG........................................................................................................................................................191.000.00-------1.00------------------------------
...............................................................................GGAGGGGGTGGTTTGAGTTT.......................................................................................................................................................201.000.00------------1.00-------------------------
.................................................................................................................................................AGTGAGCCCTGGAATTGG.......................................................................................181.000.00-----------------------1.00--------------
...............................................................................GGAGGGGGTGGTTTGTTCT........................................................................................................................................................191.000.00-----------------1.00--------------------
...............................................................................GGAGGGGGTGGTTTGAATA........................................................................................................................................................191.000.001.00-------------------------------------
...............................................................................GGAGGGGGTGGTTTGTGTC........................................................................................................................................................191.000.00---1.00----------------------------------
.................CAGGAGCCTCCAGTCGATCTCTC..................................................................................................................................................................................................................2311.001.00-------------------------------1.00------
...............................................................................GGAGGGGGTGGTTTGTTTA........................................................................................................................................................191.000.00-1.00------------------------------------
...............................................................................GGAGGGGGTGGTTTGAATTG.......................................................................................................................................................201.000.001.00-------------------------------------
...............................................................................GGAGGGGGTGGTTTGTGTT........................................................................................................................................................191.000.00----------------1.00---------------------
...............................................................................GGAGGGGGTGGTTTGTATT........................................................................................................................................................191.000.00----------------------1.00---------------
.................CAGGAGCCTCCAGTCGATCTC....................................................................................................................................................................................................................2111.001.00-----------1.00--------------------------
...............................................................................GGAGGGGGTGGTTTGATCTG.......................................................................................................................................................201.000.00--------1.00-----------------------------
..............................................................................................................TAGGGGATTAGGGGGTCG..........................................................................................................................181.000.00--------------1.00-----------------------
...............................................................................GGAGGGGGTGGTTTGTGTG........................................................................................................................................................191.000.001.00-------------------------------------
...........................................................TGGAAAGTGAAGATACTTG............................................................................................................................................................................191.000.00-----------1.00--------------------------
.....................................................................................GGTGGTTTGAGGGTGAGAT..................................................................................................................................................191.000.00------------------1.00-------------------
..................AGGAGCCTCCAGTCGATCTCTC..................................................................................................................................................................................................................2211.001.00--------------------------------1.00-----
........................CTCCAGTCGATCTCTCC.................................................................................................................................................................................................................1720.500.50-----------------------------------0.50--
.................................ATCTCTCCAAAGTGGTG........................................................................................................................................................................................................1730.330.33-------------------------------------0.33

Antisense strand
AGGCCCCTCAGAAAACCCAGGAGCCTCCAGTCGATCTCTCCAAAGTGGTGGTGAGTCTCTGGAAAGTGAAGATAGAATTGGAGGGGGTGGTTTGAGGGTGGGATACAGCCTAGGGGATTAGGGGGTATCTAGAAGGTAGGGAATCAGTGAGCCCTGGAATGAGATTGGGGCTTTCCCTTAGTCCCCCATTTGGAAGCATCCAGTCTTATGACTCTGCTGTTGTCTTTGCTGTTCTCTCCCTCTAACCTAT
....................................................................................................((((((..(((((....)))))..))))))........................................................................................................................
..........................................................................75...........................................................136................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782TAX577589(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................................................ATGAGATTGGGGCTTC............................................................................ 161.000.00----------------------------1.00---------
...................................CTCTCCAAAGTGGTGGTGATGG................................................................................................................................................................................................. 221.000.00-------------1.00------------------------
........................................................................................................................................................................................CCCATTTGGAAGCATAG................................................. 171.000.00-------------1.00------------------------
........................................................................................................................................................................................................................CTGTTGTCTTTGCTGAGGA............... 191.000.00------------------------------1.00-------
..............................CTTTGGAGAGATCGA............................................................................................................................................................................................................. 1520.500.50------------------------------------0.50-