ID: uc009zoc.1_intron_8_0_chr12_56333314_f.3p
GENE: DGKA(9)
chr12:56333666-56333915+


(1)
AGO2.ip
(3)
B-CELL
(6)
BREAST
(8)
CELL-LINE
(6)
CERVIX
(1)
FIBROBLAST
(1)
HELA
(1)
LIVER
(1)
OTHER
(27)
SKIN
(1)
UTERUS

Sense strand
GCATGCAGTAGCAGCTGATCTTTTAGGAGGAAGAGTAAGGAAAAGGCGTGGGTTTTGGAGGTGGGCACTTCACCCCGAACTTTTATTCTGCTACACCCTCAAGCAAGGGATCACATATCTGATCCTGCCTCACCCTCAGGTAAGAAGGAAATAGGGGGAGAGGCTCAGCTAAGCCTCCCAACTTCTTCCTTCTCCCTCAGTCTGTAAGTACACTGTTCACGACCAGTGTGCCATGAAAGCCCTGCCTTGT
........................................................................................((((.........)))).(((((((......)))))))(((((.(((((................))))).)))))......................................................................................
................................................................................81....................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR040010(GSM532895)
G529N. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038854(GSM458537)
MM653. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR040024(GSM532909)
G613N. (cervix)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR040027(GSM532912)
G220T. (cervix)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
............................................................................................................................................TAAGAAGGAAATAGGGGGAGAGA.......................................................................................2319.002.005.00----------------------1.00-------------------1.00---1.001.00--------
.............................................................................................................................................AAGAAGGAAATAGGGGGAGAGG.......................................................................................2219.009.007.00------------2.00-------------------------------------------
............................................................................................................................................TAAGAAGGAAATAGGGGGAGAGG.......................................................................................2318.008.006.00----1.00-------------------------1.00-------------------------
............................................................................................................................................TAAGAAGGAAATAGGGGGAGA.........................................................................................2118.008.003.00-2.00------1.00------------1.00-1.00--------------------------------
.............................................................................................................................................AAGAAGGAAATAGGGGGAGAGGC......................................................................................2315.005.00----1.00---1.00-----1.00---1.00---------1.00----------------------------
............................................................................................................................................TAAGAAGGAAATAGGGGGAGAGGT......................................................................................2415.008.00---3.00--------------------------1.00---------1.00----------------
.............................................................................................................................................AAGAAGGAAATAGGGGGAGAG........................................................................................2114.004.00----1.00-----1.00--------1.00----------------1.00--------------------
............................................................................................................................................TAAGAAGGAAATAGGGGGAGAGGA......................................................................................2412.008.00----1.00--------------------------------------------1.00-------
............................................................................................................................................TAAGAAGGAAATAGGGGGAGAG........................................................................................2212.002.00----------------2.00----------------------------------------
.............................................................................................................................................AAGAAGGAAATAGGGGGAGAGGCT.....................................................................................2412.002.002.00--------------------------------------------------------
............................................................................................................................................TAAGAAGGAAATAGGGGGAGAGGC......................................................................................2412.002.001.00-----------1.00--------------------------------------------
.............................................................................................................................................AAGAAGGAAATAGGGGGAGAGGCG.....................................................................................2412.005.002.00--------------------------------------------------------
............................................................................................................................................TAAGAAGGAAATAGGGGGAGATT.......................................................................................2311.008.00--------------------------------------------------1.00------
.............................................................................................................................................AAGAAGGAAATAGGGGGAGA.........................................................................................2011.001.00---------------------------------------------1.00-----------
............................................................................................................................................TAAGAAGGAAATAGGGGGAGAGAT......................................................................................2411.002.00-----1.00---------------------------------------------------
........................................................................................................................................CAGGTAAGAAGGAAATAGA...............................................................................................191.000.00--------------------1.00------------------------------------
............................................................................................................................................TAAGAAGGAAATAGGGGGAGAGGAAA....................................................................................2611.008.00--------------1.00------------------------------------------
.............................................................................................................................................AAGAAGGAAATAGGGGGAGAGGT......................................................................................2311.009.00-1.00-------------------------------------------------------
.................................................................................................................................................................................................................................GTGTGCCATGAAAGCCCTGCCTT..2311.001.00-------1.00-------------------------------------------------
..................................GTAAGGAAAAGGCGTGGGTT....................................................................................................................................................................................................2011.001.00---------1.00-----------------------------------------------
..........GCAGCTGATCTTTTACT...............................................................................................................................................................................................................................171.000.00-------------------------1.00-------------------------------
.....................................................................................TTCTGCTACACCCTCAAG...................................................................................................................................................1811.001.00--------1.00------------------------------------------------
...........................................................................................................................................GTAAGAAGGAAATAGGGGGAGAGGC......................................................................................2511.001.00----------1.00----------------------------------------------
.............................................................................................................................................AAGAAGGAAATAGGGGGAAT.........................................................................................201.000.00---------------------------------------------------1.00-----
.......................TAGGAGGAAGAGTAAGGAGTGT.............................................................................................................................................................................................................221.000.00--------------------------------------------1.00------------
................................................................GCACTTCACCCCGAACTT........................................................................................................................................................................1811.001.00-----------------1.00---------------------------------------
...............................................................................................................................................................................TCCCAACTTCTTCCTTCTCCCT.....................................................2211.001.00---------------1.00-----------------------------------------
.....................................................TTTGGAGGTGGGCACTTC...................................................................................................................................................................................1811.001.00-------1.00-------------------------------------------------
.................................................................................................................................................................................................CCCTCAGTCTGTAAGTACACTGTTCAC..............................2711.001.00---------------------------1.00-----------------------------
............................................................................................................................................TAAGAAGGAAATAGGGGGAGAGAA......................................................................................2411.002.00---------------1.00-----------------------------------------
.............................................................................................................................................AAGAAGGAAATAGGGGGAGAGGA......................................................................................2311.009.00------------------------------------------1.00--------------
............................................................................................................................................TAAGAAGGAAATAGGGAAAA..........................................................................................201.000.00-----------------------------1.00---------------------------
...............................................................................CTTTTATTCTGCTACTAAA........................................................................................................................................................191.000.00------1.00--------------------------------------------------
............................................................................................................................................TAAGAAGGAAATAGGGGGA...........................................................................................1911.001.00--1.00------------------------------------------------------
.............................................................................................................................................AAGAAGGAAATAGGGGGAGAGGCTTTAT.................................................................................2811.002.00---------------------------------------1.00-----------------
............................................................................................................................................TAAGAAGGAAATAGGGGGAGAT........................................................................................2211.008.00----------------------------------------------1.00----------
...............................................................................................................................................................................TCCCAACTTCTTCCTTCTCCC......................................................2111.001.00----------------------------------1.00----------------------
.....................................................................................................................................................................................CTTCTTCCTTCTCCCTCTCTT................................................211.000.00------------1.00--------------------------------------------
..............................................................................................................................................................................................................................CCAGTGTGCCATGAAAGCCC........2011.001.00---------------------------------1.00-----------------------
....................................................................................................................................................................................ACTTCTTCCTTCTCCGCTT...................................................191.000.00------1.00--------------------------------------------------
...........................................................................................................................................................................AGCCTCCCAACTTCTTC..............................................................1711.001.00-----------------------------------------1.00---------------
........TAGCAGCTGATCTTTTGATG..............................................................................................................................................................................................................................201.000.00-----------1.00---------------------------------------------
.............................................................................................................................................................................................................................ACCAGTGTGCCATGAAAGC..........1911.001.00-1.00-------------------------------------------------------
............................................................................................................................................TAAGAAGGAAATAGGGGGAGAAA.......................................................................................2311.008.00--------------------------1.00------------------------------
.............................................................................................................................................AAGAAGGAAATAGGGGGAG..........................................................................................1911.001.00-----------------------------------1.00---------------------
............................................................................................................................................TAAGAAGGAAATAGGGG.............................................................................................1720.500.50-----0.50---------------------------------------------------
............................................................................................................................................TAAGAAGGAAATAGGGGATT..........................................................................................2020.500.50-0.50-------------------------------------------------------
....................................AAGGAAAAGGCGTGG.......................................................................................................................................................................................................1550.400.40-------------------------------------------------------0.40-

Antisense strand
GCATGCAGTAGCAGCTGATCTTTTAGGAGGAAGAGTAAGGAAAAGGCGTGGGTTTTGGAGGTGGGCACTTCACCCCGAACTTTTATTCTGCTACACCCTCAAGCAAGGGATCACATATCTGATCCTGCCTCACCCTCAGGTAAGAAGGAAATAGGGGGAGAGGCTCAGCTAAGCCTCCCAACTTCTTCCTTCTCCCTCAGTCTGTAAGTACACTGTTCACGACCAGTGTGCCATGAAAGCCCTGCCTTGT
........................................................................................((((.........)))).(((((((......)))))))(((((.(((((................))))).)))))......................................................................................
................................................................................81....................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR040010(GSM532895)
G529N. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038854(GSM458537)
MM653. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR040024(GSM532909)
G613N. (cervix)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR040027(GSM532912)
G220T. (cervix)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
..............................................................................................................................................................................GGGAGAAGGAAGAAGTTGGGAG...................................................... 2212.002.00-2.00-------------------------------------------------------
.............................................................................................................................................................................GAAGGAAGAAGTTGGGAGG.......................................................... 1912.002.00-2.00-------------------------------------------------------
.........................................................................................................................................................................TAAGCCTCCCAACTTCTTT.............................................................. 191.000.00--------------------------------1.00------------------------
..................................................................................................................................................................................AGGGAGAAGGAAGAAGTTG..................................................... 1911.001.00---------------------1.00-----------------------------------
........................................................................................................................................................................................AGACTGAGGGAGAAGGAAG............................................... 1911.001.00--------------------------------------1.00------------------
.......................................................................................................................................................................................TCTTCCTTCTCCCTCAGGGTA.............................................. 211.000.00-----------1.00---------------------------------------------
...........................................................................................................................................................................................ACAGACTGAGGGAGAAGG............................................. 1821.001.00----------------------------------------------------0.500.50---
....................................................................................................................................................................................TACAGACTGAGGGAGAAGGAAGAAGT............................................ 2611.001.00-------------------------------------1.00-------------------
..................................................................................................................................................................................GGGAGAAGGAAGAAGTTG...................................................... 1820.500.50------------------------------------------------------0.50--
..............................................................................................................................................................................AAGGAAGAAGTTGGGAG........................................................... 1730.330.33--------------------------------------------------------0.33