ID: uc009znw.2_intron_2_0_chr12_56082085_r.3p
GENE: (9)
chr12:56082035-56082284-


(3)
BRAIN
(9)
BREAST
(10)
CELL-LINE
(1)
CERVIX
(7)
HEART
(8)
LIVER
(2)
OTHER
(14)
SKIN
(1)
UTERUS

Sense strand
CACCCTCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCCAGCCCAAACGCAGCATACTCTTAACCCAAACCAGGCAGAAACATCCTCTGTGTTGGGCACCATTACATTTATAATTTCAGGAGGTAAGGGGAAGGGAGGGAGACATGGGGCATTTAGGAGAAGGGTCTCCTTCCCTGTTCCCTTAGGAGTACTCAGCTGTGAAGTCCCTGGAAGTGATTGTCCGGGCCAACATCAC
..............................................................................(((((.....(((((.......))))).)))))...........................((((((((((((((((((((....................)))))))))))).))))))))...................................................
.............................................................................78........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
TAX577740(Rovira)
total RNA. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR037936(GSM510474)
293cand1. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR037938(GSM510476)
293Red. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR037941(GSM510479)
293DroshaTN. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335SRR040032(GSM532917)
G603N. (cervix)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577745(Rovira)
total RNA. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
...................................................................................................................................................................................TCTCCTTCCCTGTTCCCTTAGT.................................................22122.001.002.00-3.00-----3.00-1.002.001.00---2.001.00-------1.00----1.00-1.00----1.00-------1.00--1.001.00-------
..................................................................................AACCAGGCAGAAACACCA......................................................................................................................................................1819.000.00---1.005.004.00---------1.00---1.001.001.00-------1.00-----1.00------1.00-------1.00----1.00-
...................................................................................................................................................................................TCTCCTTCCCTGTTCCCTTACC.................................................224.000.00---2.00-------1.001.00--------------------------------------------
..............................................................................................................................................................................................................TCAGCTGTGAAGTCCCTGGAAG......................2212.002.001.00------------1.00-------------------------------------------
.............................................................................................................................................................................................................CTCAGCTGTGAAGTCCCTGGAAG......................2312.002.001.00-------------1.00------------------------------------------
...................................................................................................................................................................................TCTCCTTCCCTGTTCCCTTAGC.................................................2212.001.00------------1.00--------------1.00-----------------------------
.................................................................................AAACCAGGCAGAAACACCA......................................................................................................................................................192.000.00-----1.00----------------------1.00----------------------------
...................................................................................................................................................................................TCTCCTTCCCTGTTCCCTTACT.................................................221.000.00-----------------------------------------------1.00---------
..................................................................................AACCAGGCAGAAACACCAT.....................................................................................................................................................191.000.00---------------------------------------1.00-----------------
........................................................................TCTTAACCCAAACCAACTA...............................................................................................................................................................191.000.00------------------------------------1.00--------------------
..................................AGGTGTGAGCCACTGTGCCCAGCGCG..............................................................................................................................................................................................261.000.00-------1.00-------------------------------------------------
...................................................................................................................................................................................TCTCCTTCCCTGTTCCCTTAG..................................................2111.001.00---1.00-----------------------------------------------------
................................ACAGGTGTGAGCCACTGTGCCCAGCCGCG.............................................................................................................................................................................................291.000.00-------1.00-------------------------------------------------
..............................................................................................................................................................................................................TCAGCTGTGAAGTCCCTGGAAGTGATTGTCC.............3111.001.00--------------1.00------------------------------------------
................................................................................................................................................................................................................AGCTGTGAAGTCCCTGGAAG......................2011.001.001.00--------------------------------------------------------
..................................................................................AACCAGGCAGAAACATG.......................................................................................................................................................171.000.00--------------------------------------------1.00------------
..........................................................................................................................................TAAGGGGAAGGGAGGGAGACA...........................................................................................2111.001.00--------------------------1.00------------------------------
.................................................................................AAACCAGGCAGAAACATCAT.....................................................................................................................................................201.000.00-----------------------------------------------------1.00---
.................................................................................................................................................................................................................................AAGTGATTGTCCGGGCC........1711.001.001.00--------------------------------------------------------
.................................................................AGCATACTCTTAACCCAAACCAGGCAGAAAC..........................................................................................................................................................3111.001.00--1.00------------------------------------------------------
.ACCCTCCTTGGCCTCCAGCT.....................................................................................................................................................................................................................................201.000.00---1.00-----------------------------------------------------
...............................................................................................................................................................................................................................GGAAGTGATTGTCCGGGCC........1911.001.00---------------------------------------------------1.00-----
............................................................................................................................................................................................................ACTCAGCTGTGAAGTCCCTGGAAG......................2411.001.00-----------------------1.00---------------------------------
.................................................................................AAACCAGGCAGAAACACC.......................................................................................................................................................181.000.00----------------------------------------------------1.00----
..................................................................................AACCAGGCAGAAACACCAA.....................................................................................................................................................191.000.00---------------1.00-----------------------------------------
................................ACAGGTGTGAGCCACTGTGCCCAGCCCAACCA..........................................................................................................................................................................................321.000.00-------1.00-------------------------------------------------
...................................................................................................................................................................................TCTCCTTCCCTGTTCCCTTAGTA................................................2311.001.00----------1.00----------------------------------------------
.................................................................................................................................................................................................................................AAGTGATTGTCCGGGC.........1611.001.00-------------1.00-------------------------------------------
..........................................................................................................................................TAAGGGGAAGGGAGGGAGACTTTT........................................................................................241.000.00------------------1.00--------------------------------------
...................................................................................................................................................................................TCTCCTTCCCTGTTCCCTACCA.................................................221.000.00-----------------------------------------1.00---------------
......................................................................................................................................GAGGTAAGGGGAAGGGTG..................................................................................................181.000.00-------------------------------------------1.00-------------
...................................................................................ACCAGGCAGAAACATCCT.....................................................................................................................................................1811.001.00--------------------------------------1.00------------------
...............................................................................................................................................................................................................CAGCTGTGAAGTCCCTGGAAG......................2111.001.00--1.00------------------------------------------------------
..................................................................GCATACTCTTAACCCAAACCAGGCAGAAACA.........................................................................................................................................................3111.001.001.00--------------------------------------------------------
...............................................................................................................................................................................................................................GGAAGTGATTGTCCGGGC.........1811.001.00---------1.00-----------------------------------------------
.........................................................................................................................................................................................................AGTACTCAGCTGTGAAGTC..............................1911.001.001.00--------------------------------------------------------
................................................................................................................................................................................................................................GAAGTGATTGTCCGGGCCA.......1911.001.00----------------------------------------------1.00----------
...................................................................................................................................................................................TCTCCTTCCCTGTTCCCTTAGTT................................................2311.001.00--------1.00------------------------------------------------
.....................................................................................................CTGTGTTGGGCACCATT....................................................................................................................................1720.500.50--------------------------------------------------------0.50

Antisense strand
CACCCTCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCCAGCCCAAACGCAGCATACTCTTAACCCAAACCAGGCAGAAACATCCTCTGTGTTGGGCACCATTACATTTATAATTTCAGGAGGTAAGGGGAAGGGAGGGAGACATGGGGCATTTAGGAGAAGGGTCTCCTTCCCTGTTCCCTTAGGAGTACTCAGCTGTGAAGTCCCTGGAAGTGATTGTCCGGGCCAACATCAC
..............................................................................(((((.....(((((.......))))).)))))...........................((((((((((((((((((((....................)))))))))))).))))))))...................................................
.............................................................................78........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
TAX577740(Rovira)
total RNA. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR037936(GSM510474)
293cand1. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR037938(GSM510476)
293Red. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR037941(GSM510479)
293DroshaTN. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335SRR040032(GSM532917)
G603N. (cervix)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577745(Rovira)
total RNA. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
....CTCCTTGGCCTCCCAAAGTTCCG............................................................................................................................................................................................................................... 232.000.00------2.00--------------------------------------------------
...........................................................................................................................................................................................................ACTTCCAGGGACTTCACAGCTGAGTA..................... 2611.001.00-1.00-------------------------------------------------------
..........................................GCCACTGTGCCCAGCCCAAACC.......................................................................................................................................................................................... 221.000.00------1.00--------------------------------------------------
.........................................................................................CAGAAACATCCTCTGGCG............................................................................................................................................... 181.000.00---------------------------------1.00-----------------------
...............................................GCTGCGTTTGGGCTGGGCACA...................................................................................................................................................................................... 2111.001.00----------------------------------------1.00----------------
....................................................................................................................................................CCTAAATGCCCCATGTCTCCCTCC.............................................................................. 2411.001.00-1.00-------------------------------------------------------
........................................................................................................................................................................................................................................TGTCCGGGCCAACATCTT 181.000.00------------------------------------------------------1.00--
....................................................................................................................................................TAAATGCCCCATGTCTCCCTCC................................................................................ 2211.001.001.00--------------------------------------------------------
..........................................GCCACTGTGCCCAGCCCAAAC........................................................................................................................................................................................... 211.000.00------1.00--------------------------------------------------
....................................................................................AGAGGATGTTTCTGCCTGG................................................................................................................................................... 1911.001.00----------------------1.00----------------------------------
...................................GGTGTGAGCCACTGTGCCCAGCCCAACGT.......................................................................................................................................................................................... 291.000.00-------1.00-------------------------------------------------
................................................................................................................................................................................................................ACTTCCAGGGACTTCACAGCT..................... 2111.001.00---------1.00-----------------------------------------------
................................................................................................................................................................................AAGGGAACAGGGAAGGAGACCC.................................................... 2211.001.00-1.00-------------------------------------------------------
.......................................................................................................................................................................................................TCCAGGGACTTCACAGCTGAGTACTCC........................ 2711.001.001.00--------------------------------------------------------
................................................................................................................................CTTCCCCTTACCTCCTGAAA...................................................................................................... 2011.001.00---------1.00-----------------------------------------------
..................................................................................................................................................................................AAGGGAACAGGGAAGGAGAC.................................................... 2011.001.00-1.00-------------------------------------------------------
............................................................................................................................................................................................................AGGGACTTCACAGCTGAGT........................... 1911.001.00-1.00-------------------------------------------------------
...................................................................................................................................................................................TCTCCTTCCCTGTTCCCTTTC.................................................. 211.000.00-1.00-------------------------------------------------------
................................................................................................................................................................................TCCTAAGGGAACAGGGAAGGAGACCC................................................ 2611.001.001.00--------------------------------------------------------
.................................................GCTGCGTTTGGGCTGGGCA...................................................................................................................................................................................... 1911.001.00------------------------1.00--------------------------------
................................................................................................................................................................................................................TCCAGGGACTTCACAGCT........................ 1811.001.00-1.00-------------------------------------------------------
.......................................TGAGCCACTGTGCCCAGCCCAAA............................................................................................................................................................................................ 231.000.00----------------------------------1.00----------------------
.......................................................................................................................................................................................GTACTCCTAAGGGAACAGGGAAG............................................ 2311.001.001.00--------------------------------------------------------
................................................GTGCCCAGCCCAAACTCTG....................................................................................................................................................................................... 191.000.00-------------------------------1.00-------------------------
.................................................................................................................................................................................................................TTCCAGGGACTTCACAGC....................... 1811.001.00----------1.00----------------------------------------------
.............................................................................................................................................................................................................CAGGGACTTCACAGCTGAG.......................... 1920.500.500.50--------------------------------------------------------
.................................................................................................TGGTGCCCAACACAGAGGA...................................................................................................................................... 1920.500.50---------0.50-----------------------------------------------
...............................................................................................................................................................................................................GGGACTTCACAGCTG............................ 1570.140.14----------0.14----------------------------------------------