ID: uc009zmv.2_intron_13_0_chr12_53594231_r.5p
GENE: (1)
chr12:53594702-53594951-


(1)
AGO1.ip 		(1)
AGO3.ip 		(9)
B-CELL 		(14)
BREAST 		(28)
CELL-LINE 		(5)
CERVIX 		(4)
HEART 		(1)
KIDNEY 		(6)
LIVER 		(3)
OTHER 		(2)
RRP40.ip 		(8)
SKIN 		(1)
TESTES 		(4)
UTERUS

Sense strand
GTCTGACTTGCCCCACAGCCAGTGAGTGACTGCAGCAGCACCAGAATCTGGTCTGTTTCCTGTTTGGCTCTTCTACCACTACGGCTTGGGATCTCGGTAAATAGAACTGGGTGCAGACTTTAGTGCTTTCAGGCTCAGTCCCCAAATCCTTTAGTAGGCCATTTTGCCCACCTTGGCCACATGAAGTCTGCACACAGGAAGGACAGATCTTCTCTGAGGCCCCTATTTTTTTTTTTTTTAAGACAGATTC
..................................................................................((.(((((..((((((.......))))))....((((.....(((....)))..)))))))))..)).....................................................................................................
..........................................................................75..........................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189785SRR189783SRR343335SRR189786SRR343334SRR189787SRR343337SRR343336SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR038859(GSM458542)
MM386. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR038857(GSM458540)
D20. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
................................................................................................................................TCAGGCTCAGTCCCCCCCG.......................................................................................................1910112.000.007377.001349.00835.00471.0028.004.0027.002.007.007.00-4.00-------------------------------1.00-------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCCG........................................................................................................18466.000.00281.00133.0022.0019.002.001.006.00-2.00------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCCCA.......................................................................................................19420.000.00232.00101.0035.0050.00---2.00-------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACCCG......................................................................................................204302.753.50244.5029.2522.500.751.00-0.500.251.502.00-----------------------------------------------------------------------------0.25---0.25-
................................................................................................................................TCAGGCTCAGTCCCCG..........................................................................................................16257.000.0086.00131.0018.0016.002.00-1.00-1.002.00-----------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCG.........................................................................................................17192.000.0046.00130.006.004.001.00-1.00-------------3.001.00-----------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGAT........................................................................................................18162.000.0062.0045.00-1.003.0018.006.0015.002.001.001.00---1.00------1.00-2.001.00---------------1.00-----------------------1.00-------1.00--------------------
................................................................................................................................TCAGGCTCAGTCCCCCCGA.......................................................................................................19149.000.0092.0029.005.002.006.006.002.001.002.00--1.00-------1.00---------------------------------------------------1.00-------1.00-------------
................................................................................................................................TCAGGCTCAGTCCCCCGAT.......................................................................................................19145.000.0025.0053.001.00-3.0012.001.007.002.002.003.001.00--3.002.003.00-----3.00-1.002.001.001.00--1.001.002.002.00-2.00--2.00--1.001.00----1.00-------------1.00---1.001.00--1.00---1.00-------1.00-----------
................................................................................................................................TCAGGCTCAGTCCCCGA.........................................................................................................17106.000.0064.0020.003.00-5.002.002.005.00--2.00---1.00------------1.00---1.00-------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCCCT.......................................................................................................1962.000.0044.004.0013.001.00-----------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCCCC.......................................................................................................1962.000.0036.0023.002.001.00-----------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCGA........................................................................................................1859.000.0021.0017.00--3.00-3.003.00--1.00----2.001.00-1.00---------1.00--------1.00--1.00-----1.00------------1.00---1.00----------1.00------------------
................................................................................................................................TCAGGCTCAGTCCCCCCC........................................................................................................1846.000.0029.0014.001.00-2.00----------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCGCG.......................................................................................................1930.000.0027.002.00-1.00-----------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCCAG.......................................................................................................1930.000.0026.003.00-1.00-----------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCTCG.......................................................................................................1922.000.0016.005.001.00------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCACG.......................................................................................................1920.000.0016.003.00-1.00-----------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCC.........................................................................................................1717.000.009.005.00--2.001.00---------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCCTG.......................................................................................................1916.000.0012.003.001.00------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCCA........................................................................................................1815.000.004.008.003.00------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCCGG.......................................................................................................1912.000.008.003.00---1.00---------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGATT.......................................................................................................1910.000.001.00----2.00-2.00--1.00-------1.00-----------------1.00----------------1.00----------------------1.00----------------
................................................................................................................................TCAGGCTCAGTCCCCACCG.......................................................................................................1949.253.506.502.00-0.75-----------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGTT........................................................................................................189.000.002.002.00---1.00-1.00--1.00--------1.00-------------------------------------------------------1.00-----------------
................................................................................................................................TCAGGCTCAGTCCCCAACCG......................................................................................................208.000.006.002.00-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGCCC.......................................................................................................196.000.00-6.00-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGAC........................................................................................................186.000.004.001.00---1.00---------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGCCG.......................................................................................................196.000.005.001.00-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGT.........................................................................................................175.000.005.00--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCGAA.......................................................................................................195.000.00-1.00-----------------1.00------1.00---1.00-------------------------------------------------1.00------------
................................................................................................................................TCAGGCTCAGTCCCCGATA.......................................................................................................195.000.00-----3.00------------1.00----------------------1.00---------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGAG........................................................................................................184.000.001.002.00-------------------------------------1.00-----------------------------------------------------
...............................................................................TACGGCTTGGGATCTCG..........................................................................................................................................................1714.004.00-----------------------------2.00--------------------1.00---------1.00--------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCGAC.......................................................................................................194.000.001.001.00-----2.00-------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCA..........................................................................................................1643.503.502.000.75-0.25----------------------------------------------------------------------------------0.50------
................................................................................................................................TCAGGCTCAGTCCCCCAAT.......................................................................................................193.000.00---3.00-----------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCGCT.......................................................................................................193.000.001.002.00-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCCGT.......................................................................................................193.000.002.00--------------------1.00-----------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGAA........................................................................................................183.000.001.001.00-----1.00-------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCCTA.......................................................................................................193.000.001.002.00-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGTTT.......................................................................................................193.000.00-2.00--------------------------------1.00----------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGTTA.......................................................................................................193.000.00-2.00-----1.00-------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCCAA.......................................................................................................193.000.002.001.00-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCCGC.......................................................................................................193.000.00-2.00----------------------------------1.00--------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCAGA.......................................................................................................192.000.001.00--1.00-----------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCCAC.......................................................................................................192.000.001.001.00-------------------------------------------------------------------------------------------
................................................TGGTCTGTTTCCTGTTGTTG......................................................................................................................................................................................202.000.00-1.00-----1.00-------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCCAT.......................................................................................................192.000.002.00--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACCCT......................................................................................................2042.003.500.751.000.25------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCGTT.......................................................................................................192.000.00-----------------------1.00----------1.00----------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGAAA.......................................................................................................192.000.00--1.00------------1.00-----------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGATC.......................................................................................................192.000.00-1.00----------------------------------------1.00--------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCAACCGA.....................................................................................................212.000.001.001.00-------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................CCCTATTTTTTTTTTTTTCCG.........212.000.00-------------2.00-------------------------------------------------------------------------------
................................................................................ACGGCTTGGGATCTCG..........................................................................................................................................................1612.002.00---------------------------------------1.00------------------------------1.00----------------------
................................................................................................................................TCAGGCTCAGTCCCCACCGA......................................................................................................2041.753.501.50--0.25-----------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACACG......................................................................................................2041.503.50-1.250.25------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACCAG......................................................................................................2041.503.500.750.75-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACTCG......................................................................................................2041.503.501.000.50-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACCGG......................................................................................................2041.253.500.750.50-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACCCA......................................................................................................2041.253.500.250.500.50------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCTT........................................................................................................181.000.00-1.00-------------------------------------------------------------------------------------------
...........................................................................................TCTCGGTAAATAGAACTCTG...........................................................................................................................................201.000.00-----------------------------------------------------------------------------1.00---------------
................................................................................................................................TCAGGCTCAGTCCCCCGAG.......................................................................................................191.000.00----------1.00----------------------------------------------------------------------------------
.............................................................................................................................................................................................................................CCTATTTTTTTTTTTTTTATG........211.000.00-------------1.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................................................CCTATTTTTTTTTTTTTTATTG.......221.000.00------------1.00--------------------------------------------------------------------------------
....................AGTGAGTGACTGCAGCAGCACC................................................................................................................................................................................................................2211.001.00------------------------------------------------1.00--------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGGCG.......................................................................................................191.000.001.00--------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGAGGCCCCTATTTTTA...................171.000.00---------------------------------------------------1.00-----------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCAAG.......................................................................................................191.000.001.00--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCAG........................................................................................................181.000.00-1.00-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCGCA.......................................................................................................191.000.001.00--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACG........................................................................................................1841.003.500.500.50-------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................TATTTTTTTTTTTTTTAAGTCT.....221.000.00-------------------------------------------------------------------1.00-------------------------
................................................................................................................................TCAGGCTCAGTCCCCCTTG.......................................................................................................191.000.00-1.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................CCTATTTTTTTTTTTTTTCAAG.......221.000.00-----------------1.00---------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCGC........................................................................................................181.000.00-1.00-------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................CCCTATTTTTTTTTTTTCTTC.........211.000.00------------1.00--------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGCCT.......................................................................................................191.000.00----------------------------1.00----------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGCT........................................................................................................181.000.001.00--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCTCT.......................................................................................................191.000.001.00--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCAAC........................................................................................................181.000.001.00--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCAATCG......................................................................................................201.000.00-1.00-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCAACCT......................................................................................................201.000.00-1.00-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCT.........................................................................................................171.000.00---1.00-----------------------------------------------------------------------------------------
..................CCAGTGAGTGACTGCAGCAGC...................................................................................................................................................................................................................2111.001.00--------------------------------------------------------1.00------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGTCG.......................................................................................................191.000.00-1.00-------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CTATTTTTTTTTTTTTTATTAG......221.000.00-------------1.00-------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGACT.......................................................................................................191.000.00-----1.00---------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCATCCG......................................................................................................2041.003.50-1.00-------------------------------------------------------------------------------------------
.............................................................................................TCGGTAAATAGAACTGGGTGCTCTG....................................................................................................................................251.000.00----------1.00----------------------------------------------------------------------------------
..........................................................CCTGTTTGGCTCTTCTAA..............................................................................................................................................................................181.000.00-----------------------------------------------------------------------------------1.00---------
......................TGAGTGACTGCAGCAAA...................................................................................................................................................................................................................171.000.00-------------------------------------------------1.00-------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCGT........................................................................................................181.000.00-1.00-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCTCC.......................................................................................................191.000.00-1.00-------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................CCCTATTTTTTTTTTTTCTG..........201.000.00-----------------1.00---------------------------------------------------------------------------
.................................................................................................................................................................TTTTGCCCACCTTGGCTAG......................................................................191.000.00-------------------------------------------------------1.00-------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCAACAGC.....................................................................................................211.000.00-1.00-------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................CCCTATTTTTTTTTTTTTTACCAG......241.000.00-----------1.00---------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCGGA.......................................................................................................191.000.001.00--------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................CCCTATTTTTTTTTTTTCCC..........201.000.00-----------1.00---------------------------------------------------------------------------------
............................................................................................................................................................................................................................CCCTATTTTTTTTTTTTTTATTT.......231.000.00------------1.00--------------------------------------------------------------------------------
................................................TGGTCTGTTTCCTGTTGACG......................................................................................................................................................................................201.000.00-------1.00-------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCCT........................................................................................................181.000.001.00--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGCC........................................................................................................181.000.001.00--------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGAGGCCCCTATTTTCATT.................191.000.00------------------------------------------------------1.00--------------------------------------
............................................................................................................................................................................................................................CCCTATTTTTTTTTTAATG...........191.000.00-----------------1.00---------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGCA........................................................................................................181.000.00-1.00-------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................TATTTTTTTTTTTTTTATTAG......211.000.00------------1.00--------------------------------------------------------------------------------
............................................................................................................................................................................................................................CCCTATTTTTTTTTTTTCAGG.........211.000.00------------------------------------------------------------------------------------1.00--------
.............................................................................................................................................................................................................................CCTATTTTTTTTTTTTTTCAAT.......221.000.00------------1.00--------------------------------------------------------------------------------
................................CAGCAGCACCAGAATATTG.......................................................................................................................................................................................................191.000.001.00--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGTAA.......................................................................................................191.000.00----------------------------------------------------------1.00----------------------------------
................................................................................................................................TCAGGCTCAGTCCCCAAAA.......................................................................................................191.000.00--------------------------------------------1.00------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGC.........................................................................................................171.000.00-1.00-------------------------------------------------------------------------------------------
................................................................................................................................................................................CCACATGAAGTCTGCACACAGGAAGGACAG............................................3011.001.00---------------------------------------------1.00-----------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCAAAG.......................................................................................................191.000.00----------------------------------------------------------------------------------1.00----------
............................................................................................................................................................................................................................CCCTATTTTTTTTTTTTTTGTT........221.000.00-----------1.00---------------------------------------------------------------------------------
...............................................................................................................................TTCAGGCTCAGTCCCCA..........................................................................................................1711.001.00-1.00-------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................CCCTATTTTTTTTTTTTTTACG........221.000.00------------1.00--------------------------------------------------------------------------------
.............................................................................................................................................................................................................................CCTATTTTTTTTTTTTTTAAATT......231.000.00-------------1.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................................................CCTATTTTTTTTTTTTTTCTTC.......221.000.00-----------1.00---------------------------------------------------------------------------------
............................................................................................................................................................................................................................CCCTATTTTTTTTTTTTTGAT.........211.000.00-----------1.00---------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCAAGT.......................................................................................................191.000.00--------------------------------------------------------------1.00------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGCTT.......................................................................................................191.000.00-------------------------------------------------------------------------------------1.00-------
............................................................................................................................................................................................................................CCCTATTTTTTTTTTTTCCG..........201.000.00------------1.00--------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCAAACGAT....................................................................................................221.000.001.00--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCTAG.......................................................................................................191.000.00-1.00-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCCTG........................................................................................................181.000.001.00--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCGACA.......................................................................................................191.000.00-----1.00---------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................CCTATTTTTTTTTTTTTTAAGACCATG..271.000.00-------------1.00-------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCAGCCG......................................................................................................2040.753.500.75--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACGCG......................................................................................................2040.503.500.50--------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................CCCTATTTTTTTTTTTTTTAAG........2240.500.50-----------------0.50---------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCAT.........................................................................................................1740.503.50-0.50-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACAAG......................................................................................................2040.503.50-0.50-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACAC.......................................................................................................1940.503.50-0.50-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACCTG......................................................................................................2040.503.500.50--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACGA.......................................................................................................1940.253.500.25--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACGTT......................................................................................................2040.253.50-0.25-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCATTA.......................................................................................................1940.253.500.25--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACA........................................................................................................1840.253.500.25--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCATA........................................................................................................1840.253.50----------------------------------------------------------------------------------------0.25----
........................................................................................................................................................................................................................AGGCCCCTATTTTTTTTT................1840.250.25-----------------------------------------------------------------------------------------0.25---
................................................................................................................................TCAGGCTCAGTCCCCAGTCG......................................................................................................2040.253.500.25--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCAGA........................................................................................................1840.253.50------------------------------------------------------------------------------------------0.25--
................................................................................................................................TCAGGCTCAGTCCCCACCTA......................................................................................................2040.253.500.25--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACGAT......................................................................................................2040.253.500.25--------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCACTCA......................................................................................................2040.253.50-0.25-------------------------------------------------------------------------------------------
................................................................................................................................TCAGGCTCAGTCCCCATCG.......................................................................................................1940.253.500.25--------------------------------------------------------------------------------------------
...................CAGTGAGTGACTGCAG.......................................................................................................................................................................................................................1660.170.17--------------------------------------------------------------------------------------------0.17

Antisense strand
GTCTGACTTGCCCCACAGCCAGTGAGTGACTGCAGCAGCACCAGAATCTGGTCTGTTTCCTGTTTGGCTCTTCTACCACTACGGCTTGGGATCTCGGTAAATAGAACTGGGTGCAGACTTTAGTGCTTTCAGGCTCAGTCCCCAAATCCTTTAGTAGGCCATTTTGCCCACCTTGGCCACATGAAGTCTGCACACAGGAAGGACAGATCTTCTCTGAGGCCCCTATTTTTTTTTTTTTTAAGACAGATTC
..................................................................................((.(((((..((((((.......))))))....((((.....(((....)))..)))))))))..)).....................................................................................................
..........................................................................75..........................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189785SRR189783SRR343335SRR189786SRR343334SRR189787SRR343337SRR343336SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR038859(GSM458542)
MM386. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR038857(GSM458540)
D20. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.TGGCTGTGGGGCAAGTCAGA..................................................................................................................................................................................................................................... 2011.001.00--------------------------------------------------------------------1.00------------------------
............................................................................................................................................................................................................................CCCTATTTTTTTTTTTTTAGT......... 211.000.00----------------------------------------------------1.00----------------------------------------
....................................................................................................................................GCTCAGTCCCCAAATCAGG................................................................................................... 191.000.00------------------------------------------------------------------------------1.00--------------
......CTTGCCCCACAGCCAGGCA................................................................................................................................................................................................................................. 191.000.00---------------------------------------------------------1.00-----------------------------------
......................................................................................................................................................................................................AAGGACAGATCTTCTAGTA................................. 191.000.00-------------------------------------1.00-------------------------------------------------------