ID: uc009zlk.2_intron_6_0_chr12_50192247_r.3p
GENE: NCKAP5L(6)
chr12:50192197-50192446-


(2)
AGO2.ip 		(1)
AGO3.ip 		(6)
BRAIN 		(4)
BREAST 		(14)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(8)
HEART 		(3)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(2)
OTHER 		(11)
SKIN

Sense strand
GACCCTAGATCTGCCTGTGCTGTGGTCTCCTGAGGCTTCTCTTACCGGTGGGTGGGGCAGCAGCAAGAGCTGCATTTGGGGCTGGGAGTCTGGGAGTCCTCCGTGAAGGAGCGGACTCAGAGGGGAAGGCCTGGCTTTGCGAGGGAGTAGGGAGCTGGGGTCAGACAGCTACTGTGCTAACTCTGCCTCTCCCTCTGCAGATCCCACTCACTCCACTCCAGCCACCATCAGAGCCACCAGCCTCCCCCTC
.........................................................................................................................................((((((((((.(((....((((((.((((((...)))).)).)))))))))))))))).)))...................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR029128(GSM416757)
H520. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038857(GSM458540)
D20. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038863(GSM458546)
MM603. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
..................................................................................................................................................................................AACTCTGCCTCTCCCTCTGCAGT.................................................23118.0014.002.005.00-5.001.00-----1.00------1.00-------------------------1.00--1.00----1.00-------
..................................................................................................................................................................................AACTCTGCCTCTCCCTCTGCAG..................................................22114.0014.001.00-2.00---1.001.00---1.00------2.00--1.00-----1.00-1.001.00---------------------1.001.00-----
..................................................................................................................................................................................AACTCTGCCTCTCCCTCTGCAGA.................................................2319.009.001.00-----1.00---1.00-----1.00--2.00------1.00------1.001.00------------------------
.................................................................................................................................................................................TAACTCTGCCTCTCCCTCTGCAG..................................................2317.007.00--2.00----1.002.00------------1.00------------------1.00------------------
..................................................................................................................................................................................AACTCTGCCTCTCCCTCTG.....................................................1916.006.006.00----------------------------------------------------------
.................................................................................................................................................................................TAACTCTGCCTCTCCCTCTGCAGT.................................................2413.007.00------1.00--2.00-------------------------------------------------
..................................................................................................................................................................................AACTCTGCCTCTCCCTCTGTAGT.................................................2313.006.003.00----------------------------------------------------------
....................................................................................................................................................................................CTCTGCCTCTCCCTCTGCAGA.................................................2113.003.00----1.00--------2.00---------------------------------------------
.................................................................................................................................................................................TAACTCTGCCTCTCCCTCTGCAGA.................................................2413.003.00-3.00---------------------------------------------------------
.................................................................................................................................................................................TAACTCTGCCTCTCCCTCTGCA...................................................2212.002.00----1.00---------------------------1.00--------------------------
.................................................................................................................................................................................TAACTCTGCCTCTCCCTCTGCAT..................................................2312.002.00-----1.00-------------------------------1.00---------------------
.................................................................................................................................................................................TAACTCTGCCTCTCCCTCTG.....................................................2012.002.002.00----------------------------------------------------------
...........................................................................................................................................CGAGGGAGTAGGGAGCTGGGGT.........................................................................................2212.002.00--------------------2.00--------------------------------------
..................................................................................................................................................................................AACTCTGCCTCTCCCTCTGCA...................................................2112.002.00--1.00-------------------------1.00------------------------------
.......................................................................................................................................TTTGCGAGGGAGTAGGGAGC...............................................................................................2012.002.00------------------------------------------1.00----1.00-----------
.......................................................................................................................................................................GCTACTGTGCTAACTCTGCCTCTC...........................................................2412.002.00---------------2.00-------------------------------------------
..................................................................................................................................................................................AACTCTGCCTCTCCCTCTGA....................................................2011.006.001.00----------------------------------------------------------
........................................................................................TCTGGGAGTCCTCCGGAG................................................................................................................................................181.000.00--------------------------------------1.00--------------------
..........................................................................................................AGGAGCGGACTCAGAGGGGAA...........................................................................................................................2111.001.00-------------------------------------------------------1.00---
.............................................................................................................................................AGGGAGTAGGGAGCTTTA...........................................................................................181.000.00------------------------------------1.00----------------------
..................................................................................................................................................................................AACTCTGCCTCTCCCTCTGCAGG.................................................2311.0014.00-1.00---------------------------------------------------------
..................................................................................................................................................................................AACTCTGCCTCTCCCTCTGC....................................................2011.001.00-------------------------1.00---------------------------------
.................................................................................................................................................AGTAGGGAGCTGGGGTCAGACAGC.................................................................................2411.001.00-------------------------------------------------1.00---------
...................................................................................................................................................................................ACTCTGCCTCTCCCTCTG.....................................................1821.001.001.00----------------------------------------------------------
.......................................................................................................................................TTTGCGAGGGAGTAGGGAGCTGG............................................................................................2311.001.00----------------------1.00------------------------------------
.........................................................................................................AAGGAGCGGACTCAGAGGGGAAGGCCTGGCC..................................................................................................................311.000.00------------1.00----------------------------------------------
..................................................................................................................................................................................AACTCTGCCTCTCCCTCAG.....................................................191.000.001.00----------------------------------------------------------
...................................................................................................................................................................................ACTCTGCCTCTCCCTCTGCAGTT................................................231.000.00-----------------1.00-----------------------------------------
................................................................................................................................................................................CTAACTCTGCCTCTCCCTCTGC....................................................2211.001.00---------------------------------------------1.00-------------
.....................................................................................................CGTGAAGGAGCGGACTCAGAGGGGAAG..........................................................................................................................2711.001.00--------------------------------------------1.00--------------
......................................................................................................................................................................................................................ACTCCAGCCACCATCAGAGCCACCAGCC........2811.001.00-----1.00-----------------------------------------------------
......................TGGTCTCCTGAGGCTTCGC.................................................................................................................................................................................................................191.000.00------------1.00----------------------------------------------
........................................................................................................................................TTGCGAGGGAGTAGGGAGCTGG............................................................................................2211.001.00----------------1.00------------------------------------------
........................................................................................................................................TTGCGAGGGAGTAGGGAGCTGGGGCC........................................................................................2611.001.00--------------1.00--------------------------------------------
....................................................................................................................................................................................CTCTGCCTCTCCCTCTGCAGT.................................................211.000.00-----------------------1.00-----------------------------------
.....................................................................................................................CAGAGGGGAAGGCCTGCGTA.................................................................................................................201.000.00---------------------------------------1.00-------------------
.................................................................................................................................................................................TAACTCTGCCTCTCCCTCTGA....................................................2111.002.00-----------1.00-----------------------------------------------
..................................................................................................................................................GTAGGGAGCTGGGGTCAGACA...................................................................................2111.001.00------------------------------------------------------1.00----
........................................................................................................................................TTGCGAGGGAGTAGGGAGCTGGGG..........................................................................................2411.001.00-------1.00---------------------------------------------------
.........................................................................................................................................TGCGAGGGAGTAGGGAGCTGGGG..........................................................................................2311.001.00------------------------------------------------1.00----------
........................................................................................................................................TTGCGAGGGAGTAGGGAG................................................................................................1811.001.00-----1.00-----------------------------------------------------
.......................................................................................................................................TTTGCGAGGGAGTAGGGAGCTGGAAA.........................................................................................2611.001.00-----------------------------------------1.00-----------------
.............................................................................................................................................AGGGAGTAGGGAGCTGG............................................................................................1720.500.50--0.50--------------------------------------------------------
.......................................................................................................................................................................................................GATCCCACTCACTCCA...................................1630.330.33---------------------------------------------------------0.33-
............................................................................................................................................................................TGTGCTAACTCTGCCT..............................................................1630.330.33--------------------------------------------------------0.33--

Antisense strand
GACCCTAGATCTGCCTGTGCTGTGGTCTCCTGAGGCTTCTCTTACCGGTGGGTGGGGCAGCAGCAAGAGCTGCATTTGGGGCTGGGAGTCTGGGAGTCCTCCGTGAAGGAGCGGACTCAGAGGGGAAGGCCTGGCTTTGCGAGGGAGTAGGGAGCTGGGGTCAGACAGCTACTGTGCTAACTCTGCCTCTCCCTCTGCAGATCCCACTCACTCCACTCCAGCCACCATCAGAGCCACCAGCCTCCCCCTC
.........................................................................................................................................((((((((((.(((....((((((.((((((...)))).)).)))))))))))))))).)))...................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR029128(GSM416757)
H520. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038857(GSM458540)
D20. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038863(GSM458546)
MM603. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
..........................................................................................................................................................................................................CCCACTCACTCCACTCCAGCCT.......................... 222.000.00------------------------1.00----------1.00-----------------------
..................................................................................................................................................................................................................CTCCACTCCAGCCACCGGT..................... 191.000.00--------------------------------------------------1.00--------
.............CCTGTGCTGTGGTCTCCTGATAG...................................................................................................................................................................................................................... 231.000.00--------------1.00--------------------------------------------
...............TGTGCTGTGGTCTCCTGAACTA..................................................................................................................................................................................................................... 221.000.00-------------------------------1.00---------------------------
........................................................................................................................................................................................................................................GGGGGAGGCTGGTGGC.. 1650.200.20----------------------------------------------------------0.20