| (2) B-CELL | (2) BREAST | (3) CELL-LINE | (7) CERVIX | (1) HEART | (4) HELA | (1) OTHER | (8) SKIN | (1) UTERUS |
| ACTTAAGCTGGGAAAAAGTCATGCTGGGATTGGGGGACACAGGAGGCCTTGCCTTTGGGCGGTGGGGCACTGGGGAGGCAGCACTGTCTGCCCAGCTCCCTGCCCCTGGGGTCCTGGCCGTGGGGTGGGGACCACCCCCTTGGGCCCTGGCTCCTGTGTGAAGCCTTGGATGATGCGGGCCCTGACTCTGGCTCCCGCAGGTGGACACTGACACCATCTGGAATGAGCTTCATTCCTCCAATGCAGCCCG .....................................................................(((((.(((((....))))).))))).((((..((((...(((....)))..))))..))))..........((((((..(((((.((.....))...)))....)))))))).................................................................... ..................................................................67.........................................................................................................................190.......................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR040036(GSM532921) G243N. (cervix) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR015364(GSM380329) Plasma B cells (PC44). (B cell) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | TAX577742(Rovira) total RNA. (breast) | SRR040034(GSM532919) G001N. (cervix) | SRR330867(SRX091705) tissue: skin psoriatic involveddisease state:. (skin) | SRR040040(GSM532925) G612N. (cervix) | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR040019(GSM532904) G701T. (cervix) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR330863(SRX091701) tissue: skin psoriatic involveddisease state:. (skin) | SRR330891(SRX091729) tissue: skin psoriatic uninvolveddisease stat. (skin) | GSM1105753INPUT(GSM1105753) small RNA sequencing data. (hela) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189785 | SRR330896(SRX091734) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR040022(GSM532907) G575N. (cervix) | SRR191439(GSM715549) 176genomic small RNA (size selected RNA from . (breast) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | SRR040038(GSM532923) G531N. (cervix) | SRR330870(SRX091708) tissue: skin psoriatic involveddisease state:. (skin) | SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR038862(GSM458545) MM472. (cell line) | SRR040015(GSM532900) G623T. (cervix) | SRR330907(SRX091745) tissue: normal skindisease state: normal. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................GGGGAGGCAGCACTGTAGCT............................................................................................................................................................... | 20 | 16.00 | 0.00 | 13.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | |
| .......................................................................GGGGAGGCAGCACTGTTGCT............................................................................................................................................................... | 20 | 15.00 | 0.00 | 14.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................TTGGATGATGCGGGCCCTGAC................................................................ | 21 | 1 | 7.00 | 7.00 | - | 4.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................CCTTGGGCCCTGGCTCCTGTGTGAAGCCTTGGATGATGCGGGCCCTGACTCTGGCTCCCGCAG.................................................. | 63 | 1 | 4.00 | 4.00 | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................GGGATTGGGGGACACAGGAGGC........................................................................................................................................................................................................... | 22 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................TTGGATGATGCGGGCCCTGACT............................................................... | 22 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................CTTGGATGATGCGGGCCCTGACT............................................................... | 23 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............AAAGTCATGCTGGGACCA.......................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................TCATGCTGGGATTGGTTTT..................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................GGGGAGGCAGCACTGTTGC................................................................................................................................................................ | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................GGGCCCTGACTCTGGCTCCCGCAGA................................................. | 25 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................GGGGAGGCAGCACTGTAGCA............................................................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................TGATGCGGGCCCTGAC................................................................ | 16 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................CTGACTCTGGCTCCCGCAG.................................................. | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ........................................................................................................................TGGGGTGGGGACCACCCCC............................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................TGGGCGGTGGGGCACC................................................................................................................................................................................... | 16 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................TTGGGCGGTGGGGCACTGG................................................................................................................................................................................. | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................GGGCCCTGACTCTGGCTCCCGCAGAAA............................................... | 27 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................GGGGAGGCAGCACTGTACTG............................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................CGGGCCCTGACTCTGGCTCCCGCAGAA................................................ | 27 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................GGGGAGGCAGCACTGTTA................................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| .......................................................................GGGGAGGCAGCACTGATGC................................................................................................................................................................ | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................GGGGAGGCAGCACTGTTGGT............................................................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................CTTGGATGATGCGGGCCCTGAC................................................................ | 22 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................TTGGGGGACACAGGAAAA........................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .......................................................................GGGGAGGCAGCACTGTAACT............................................................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........GAAAAAGTCATGCTGGGATTGGGGGACACAG................................................................................................................................................................................................................ | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...............................................................................................................................................................................CGGGCCCTGACTCTGGCTCCCGCAGA................................................. | 26 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ....................................................................................................................................................................CTTGGATGATGCGGGCCCTG.................................................................. | 20 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................GGGGAGGCAGCACTGTGTCT............................................................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................GTCTGCCCAGCTCCCAATC.................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................GGGGAGGCAGCACTGAAGC................................................................................................................................................................ | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................GGCGGTGGGGCACTGTAGC.............................................................................................................................................................................. | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCCCCTGGGGTCCTCTT.................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................GGGCCCTGACTCTGGCTCCCGCAGAAGA.............................................. | 28 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| .......................................................................GGGGAGGCAGCACTGTTGCG............................................................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................TGGACACTGACACCATCTGGAAT.......................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ................................................................GGGCACTGGGGAGGCAGC........................................................................................................................................................................ | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |
| ACTTAAGCTGGGAAAAAGTCATGCTGGGATTGGGGGACACAGGAGGCCTTGCCTTTGGGCGGTGGGGCACTGGGGAGGCAGCACTGTCTGCCCAGCTCCCTGCCCCTGGGGTCCTGGCCGTGGGGTGGGGACCACCCCCTTGGGCCCTGGCTCCTGTGTGAAGCCTTGGATGATGCGGGCCCTGACTCTGGCTCCCGCAGGTGGACACTGACACCATCTGGAATGAGCTTCATTCCTCCAATGCAGCCCG .....................................................................(((((.(((((....))))).))))).((((..((((...(((....)))..))))..))))..........((((((..(((((.((.....))...)))....)))))))).................................................................... ..................................................................67.........................................................................................................................190.......................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR040036(GSM532921) G243N. (cervix) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR015364(GSM380329) Plasma B cells (PC44). (B cell) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | TAX577742(Rovira) total RNA. (breast) | SRR040034(GSM532919) G001N. (cervix) | SRR330867(SRX091705) tissue: skin psoriatic involveddisease state:. (skin) | SRR040040(GSM532925) G612N. (cervix) | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR040019(GSM532904) G701T. (cervix) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR330863(SRX091701) tissue: skin psoriatic involveddisease state:. (skin) | SRR330891(SRX091729) tissue: skin psoriatic uninvolveddisease stat. (skin) | GSM1105753INPUT(GSM1105753) small RNA sequencing data. (hela) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189785 | SRR330896(SRX091734) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR040022(GSM532907) G575N. (cervix) | SRR191439(GSM715549) 176genomic small RNA (size selected RNA from . (breast) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | SRR040038(GSM532923) G531N. (cervix) | SRR330870(SRX091708) tissue: skin psoriatic involveddisease state:. (skin) | SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR038862(GSM458545) MM472. (cell line) | SRR040015(GSM532900) G623T. (cervix) | SRR330907(SRX091745) tissue: normal skindisease state: normal. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................TCCTGGCCGTGGGGTGTA......................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TGGATGATGCGGGCCCCA.................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................GTGGGGCACTGGGGAGGCG.......................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................TTGGATGATGCGGGCCA.................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....AAGCTGGGAAAAAGTCCTC................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |