ID: uc009yny.1_intron_1_0_chr11_62374572_r.5p
GENE: EML3(10)
chr11:62374938-62375187-


(1)
AGO2.ip 		(4)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(16)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(1)
HELA 		(5)
LIVER 		(2)
OTHER 		(4)
SKIN

Sense strand
TAGGGGTTCCTGGGAATGGGACCCTTACCCGGAAACAGGGTGTCTTTGGGGTGAGGCATGGATAAGTGGAAGGTGATGGGGAGGGCAGAGTGGAAGAGGAAGCACTGGGCTGAGTACTATGGACCCTGAGGTTCCCTAACCCCCACCTGCCCCTGTGACCTTTTTTTTTTTTTCTTTTGAGACGGAGTCTTGCTCTTGTCACCCAGGCCAGAGTGCAATGGCAAGATCTCGGCTCACTGCAACGTCTGCC
............................................................................((.((.((((((.((((...(((.(((...(((((.........)).)))....))).))).....)))))))))))).)).............((((....))))....................................................................
...........................................................................76..........................................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189787DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189782SRR040007(GSM532892)
G601T. (cervix)		SRR038857(GSM458540)
D20. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTAAAG......................................................................2315.000.00--4.006.002.003.00-----------------------------------
.............................................................................................................................................................................................................................CAAGATCTCGGCTCACTGCAACTCTG...266.000.00-------------2.00-----1.00---------1.00-1.001.00--------
................................................................................GAGGGCAGAGTGGAAGAG........................................................................................................................................................1824.504.50-----------2.50---------2.00-------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTGG......................................................................234.000.004.00----------------------------------------
..............................................................................................................................................................CCTTTTTTTTTTTTTCTTTAAA......................................................................224.000.00--1.003.00-------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTTGG.....................................................................244.000.004.00----------------------------------------
..............................................................................................................................................................CCTTTTTTTTTTTTTCTTTAAAG.....................................................................234.000.001.00---3.00------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTCCAG.....................................................................244.000.00--1.001.00-1.00-----------------1.00-----------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTGAC.....................................................................244.000.003.001.00---------------------------------------
......................................................................................................................................................................................................TCACCCAGGCCAGAGTGCAATGGCACCA........................283.000.003.00----------------------------------------
...................................................................................................AAGCACTGGGCTGAGAGGG....................................................................................................................................193.000.00-------3.00---------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCGGAG........................................................................213.000.003.00----------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTTTGAG....................................................................273.000.00-3.00---------------------------------------
..............................................................................................................................................................CCTTTTTTTTTTTTTCTAATG.......................................................................213.000.00--3.00--------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTTTTTG....................................................................273.000.003.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTCTTT......................................................................233.000.003.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTAAA......................................................................233.000.00--3.00--------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTTCGG....................................................................253.000.003.00----------------------------------------
..............................................................................................................................................................CCTTTTTTTTTTTTTCTTTTACTG....................................................................243.000.001.00-1.001.00-------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTGGAG....................................................................252.000.002.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTCG.......................................................................222.000.001.00----1.00-----------------------------------
..................................................................................................................................................................TTTTTTTTTTTCTTTTGAGACGTG................................................................242.000.00-2.00---------------------------------------
....................................................................................................................................................................TTTTTTTTTCTTTTGAGACGGAGTCACGC.........................................................292.000.00-2.00---------------------------------------
.............GAATGGGACCCTTACC.............................................................................................................................................................................................................................1612.002.00----------------------2.00------------------
.............................CGGAAACAGGGTGTCTTTGGGAA......................................................................................................................................................................................................232.000.00--------------------2.00--------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTGAGCTGG.................................................................282.000.00-2.00---------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTTGGG....................................................................252.000.002.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTGGG.....................................................................242.000.001.001.00---------------------------------------
.....................................................................................................................................................................TTTTTTTTCTTTTGAGACGGAGTCCCGC.........................................................282.000.002.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTGCTTG...................................................................262.000.00-2.00---------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTTTTGG....................................................................272.000.001.001.00---------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTGACT....................................................................252.000.002.00----------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTTTTG.....................................................................262.000.002.00----------------------------------------
..............................................................................................................................................................CCTTTTTTTTTTTTTCTTTTGAGACT..................................................................262.000.002.00----------------------------------------
.........................................................ATGGATAAGTGGAAGGTGATGGG..........................................................................................................................................................................2312.002.00----------2.00------------------------------
.....................................................................................................................................................................................ACGGAGTCTTGCTCTTGTCACCCAGGCAGG.......................................302.000.002.00----------------------------------------
............................................................................................................................................................GACCTTTTTTTTTTTTTCTTTAAG......................................................................242.000.00---2.00-------------------------------------
..............................................................................................................................................................CCTTTTTTTTTTTTTCTTTCAAG.....................................................................231.000.00----1.00------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTGAGAGGG.................................................................281.000.001.00----------------------------------------
..........................................................TGGATAAGTGGAAGGTTCG.............................................................................................................................................................................191.000.00---------------------------1.00-------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTACAG....................................................................251.000.001.00----------------------------------------
...................................................................................................................................................................TTTTTTTTTTCTTTTGAGTTTG.................................................................221.000.00-1.00---------------------------------------
....................................................................................................................................................................TTTTTTTTTCTTTTGAGACGGAGTCCCGC.........................................................291.000.00-1.00---------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTACG......................................................................231.000.00---1.00-------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTTTTTT....................................................................271.000.001.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTAAAA....................................................................251.000.00----1.00------------------------------------
............................................................................................GAAGAGGAAGCACTGTAGC...........................................................................................................................................191.000.00---------1.00-------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTGCC.....................................................................241.000.001.00----------------------------------------
..................................................................................................................................................................TTTTTTTTTTTCTTTTGAGTTTG.................................................................231.000.00-1.00---------------------------------------
.................................................................................................................................................................TTTTTTTTTTTTCTTTTGAGACGGTCGG.............................................................281.000.00-1.00---------------------------------------
............................................................................................GAAGAGGAAGCACTGTGA............................................................................................................................................181.000.00---------1.00-------------------------------
............................................................................................................................................................................TCTTTTGAGACGGAGTCTTGCAGTG.....................................................251.000.00-1.00---------------------------------------
.........................................................................................................................................................TGTGACCTTTTTTTTTTTTTGG...........................................................................221.000.001.00----------------------------------------
............................................................................................GAAGAGGAAGCACTGTTTT...........................................................................................................................................191.000.00---------1.00-------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTAT......................................................................231.000.00---1.00-------------------------------------
...................................................................................................................................................................TTTTTTTTTTCTTTTGAGTTGT.................................................................221.000.00-1.00---------------------------------------
.....................................................................................................................................................................TTTTTTTTCTTTTGAGACGGAGTCTTGCTCAG.....................................................321.000.00-1.00---------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTTTTAG....................................................................271.000.00-1.00---------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTTCTG....................................................................251.000.00----1.00------------------------------------
.................................................................................................................................................................TTTTTTTTTTTTCTTTTGAGACGGAGGACG...........................................................301.000.001.00----------------------------------------
...................................................................................................................................................................................................................AGTGCAATGGCAAGATCTCTT..................211.000.00------------1.00----------------------------
.......................................................................................................................................................................TTTTTTCTTTTGAGACGGAGTCTTGCTCTCTC...................................................321.000.001.00----------------------------------------
......................CCTTACCCGGAAACAGGGTGTCTTTGGG........................................................................................................................................................................................................2811.001.00------------------1.00----------------------
.............................................................................................................................................................................CTTTTGAGACGGAGTCTTGCAG.......................................................221.000.001.00----------------------------------------
....................................................................................................................................................................TTTTTTTTTCTTTTGAGCTTG.................................................................211.000.00-1.00---------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTTTGCT....................................................................271.000.001.00----------------------------------------
..................................................................................................................................................................TTTTTTTTTTTCTTTTGAGACGGAGACTC...........................................................291.000.001.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTCAT......................................................................231.000.00--1.00--------------------------------------
..................................................................................................................................................................TTTTTTTTTTTCTTTTGAGTAGG.................................................................231.000.001.00----------------------------------------
............................................................................................................................................................................................................................GCAAGATCTCGGCTCACTGC..........2001.001.00-------------------------1.00---------------
..............................................................................................AGAGGAAGCACTGGGCTGAT........................................................................................................................................201.000.00----------------1.00------------------------
.................................................................................................................................................................TTTTTTTTTTTTCTTTTGAGACGGAGCT.............................................................281.000.00-1.00---------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTGTAGG...................................................................261.000.00-1.00---------------------------------------
............................................................................................................................................................................................................................GCAAGATCTCGGCTCACTG...........1901.001.00--------1.00--------------------------------
........................................................................................AGTGGAAGAGGAAGCACTGGGC............................................................................................................................................2211.001.00------------1.00----------------------------
....................................................................................................................................................................TTTTTTTTTCTTTTGAGACGGTCCC.............................................................251.000.00-1.00---------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTCCC......................................................................231.000.001.00----------------------------------------
....................................................................................................................................................................TTTTTTTTTCTTTTGAGACGGAGTCCGGC.........................................................291.000.001.00----------------------------------------
..................................................................................................................................................................TTTTTTTTTTTCTTTTGAGACGGAGTCTTGCA........................................................321.000.001.00----------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTTTT......................................................................251.000.001.00----------------------------------------
............................................................................................................................................................................TCTTTTGAGACGGAGTCTTGCCGT......................................................241.000.00-1.00---------------------------------------
................................................................................................................................................................TTTTTTTTTTTTTCTTTTGAGACGGCGG..............................................................281.000.001.00----------------------------------------
.................................................................................AGGGCAGAGTGGAAGAGGAAGCAC.................................................................................................................................................2411.001.00---------------1.00-------------------------
...............................................................................................................................................................CTTTTTTTTTTTTTCTTTTGAACC...................................................................241.000.00-1.00---------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTAAGT.....................................................................241.000.001.00----------------------------------------
.................................................................................................................................................................TTTTTTTTTTTTCTTTTGAGACGGACC..............................................................271.000.00-1.00---------------------------------------
...................................................................................................................................................................................................................AGTGCAATGGCAAGATCTCGGCTCACGC...........281.000.001.00----------------------------------------
.................................................................................................................................................................................TGAGACGGAGTCTTGCTCTTGTCCACC..............................................271.000.001.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTAGAG.....................................................................241.000.00-1.00---------------------------------------
.........................................................ATGGATAAGTGGAAGGTGATG............................................................................................................................................................................2111.001.00-------------------------------------1.00---
.....................................................................................................................................................................TTTTTTTTCTTTTGAGTTCG.................................................................201.000.001.00----------------------------------------
....................................................................................................................................................................TTTTTTTTTCTTTTGAGACGGAGTCGTAC.........................................................291.000.001.00----------------------------------------
................................................................................................................................................................TTTTTTTTTTTTTCTTTTGAGCAC..................................................................241.000.001.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCGGC.........................................................................201.000.001.00----------------------------------------
.................................................................................................................................................................TTTTTTTTTTTTCTTTTGAGACGGTCC..............................................................271.000.00-1.00---------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCGGG.........................................................................201.000.001.00----------------------------------------
..............................................................................................................................................................CCTTTTTTTTTTTTTCTTTCTTG.....................................................................231.000.00----1.00------------------------------------
....................................................................................................................................................................TTTTTTTTTCTTTTGAGACGGAGTCTTGCA........................................................301.000.00-1.00---------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTTGGC....................................................................251.000.001.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTAGCA......................................................................231.000.00-1.00---------------------------------------
...............................................................................................................................................................CTTTTTTTTTTTTTCTTTTGTACG...................................................................241.000.00-1.00---------------------------------------
...................................................................................................................................................................TTTTTTTTTTCTTTTGAGACGGAGTCCCG..........................................................291.000.00-1.00---------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTGACGG...................................................................261.000.001.00----------------------------------------
....................................................................................................................................................................TTTTTTTTTCTTTTGAGACGGAGTCCCCC.........................................................291.000.00-1.00---------------------------------------
.................................................................................................................................................................................TGAGACGGAGTCTTGCTCTTCATG.................................................241.000.00-1.00---------------------------------------
..................................ACAGGGTGTCTTTGGGGTGAGGCATGGATA..........................................................................................................................................................................................3011.001.00----------------1.00------------------------
.........................................................................................................................................................................................................................ATGGCAAGATCTCGGCTCACTG...........2201.001.00------------------1.00----------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTAAG.......................................................................221.000.00--1.00--------------------------------------
.................................................................................................................................................................TTTTTTTTTTTTCTTTTGAGTTGT.................................................................241.000.00-1.00---------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTTTCG....................................................................251.000.00----1.00------------------------------------
..........................................................................................................................................................................................................................TGGCAAGATCTCGGCTCAAA............201.000.00--------------------------------------1.00--
..................................................................................................................................................................TTTTTTTTTTTCTTTTGAGACGGAGTCCCAC.........................................................311.000.001.00----------------------------------------
........................................................................................................................................................................................................................AATGGCAAGATCTCGGCTCTCT............221.000.00-----------------1.00-----------------------
.................................................................................................................................................................................................................................ATCTCGGCTCACTGCAACGGCGC..231.000.00-1.00---------------------------------------
.........................................................................................................................................................TGTGACCTTTTTTTTTTTTTACTG.........................................................................241.000.00-1.00---------------------------------------
........................................................................................................................................................................TTTTTCTTTTGAGACGGAGTCTTGCGCTG.....................................................291.000.001.00----------------------------------------
...............................................................................................................................................................................................................................AGATCTCGGCTCACTGCAACGCCAG..251.000.00-1.00---------------------------------------
............................................................................................................................................................................TCTTTTGAGACGGAGTCTTGCTTTTG....................................................261.000.001.00----------------------------------------
.....................................................................................................................................................................TTTTTTTTCTTTTGAGACGGAGTCCCG..........................................................271.000.001.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTTAAC....................................................................251.000.001.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTCCGG.....................................................................241.000.001.00----------------------------------------
..............................................................................................................................................................CCTTTTTTTTTTTTTCTAGTG.......................................................................211.000.00----1.00------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTTGAC....................................................................251.000.001.00----------------------------------------
....................................................................................................................................................................TTTTTTTTTCTTTTGAGACGGAGTCCTCT.........................................................291.000.001.00----------------------------------------
..............................................................................................................................................................CCTTTTTTTTTTTTTCTTTCAAA.....................................................................231.000.00-----1.00-----------------------------------
.....................................................................................................................................................................TTTTTTTTCTTTTGAGACGGACC..............................................................231.000.00-1.00---------------------------------------
.................................................................................................................................................................TTTTTTTTTTTTCTTTTGAGACGGAGGCTC...........................................................301.000.00-1.00---------------------------------------
......................................................................................................................................................................TTTTTTTCTTTTGAGACGGAGTCTTGCCCTG.....................................................311.000.00-----------------------1.00-----------------
.................................................................................................................................................................TTTTTTTTTTTTCTTTTGAGACGGAGTCCCAC.........................................................321.000.00-1.00---------------------------------------
.......................................................................................................................................................................TTTTTTCTTTTGAGACGGAGACGG...........................................................241.000.001.00----------------------------------------
..GGGGTTCCTGGGAATGGGATTT..................................................................................................................................................................................................................................221.000.00-----------------------------------1.00-----
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTCGAG.....................................................................241.000.001.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTGGGGA...................................................................261.000.001.00----------------------------------------
.....................................................................................................................................................................TTTTTTTTCTTTTGAGACGGAGCTC............................................................251.000.00-1.00---------------------------------------
.............................................................................GGGGAGGGCAGAGTGGATAG.........................................................................................................................................................201.000.00----------------------------------1.00------
........................................................................................................................................................................TTTTTCTTTTGAGACGGAGTCCCGC.........................................................251.000.00-------1.00---------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTCTTG.....................................................................241.000.001.00----------------------------------------
.................................................................................................................................................................TTTTTTTTTTTTCTTTTGAGACGGAGGG.............................................................281.000.001.00----------------------------------------
................................................................................................................................................................TTTTTTTTTTTTTCTTTTGAGTCG..................................................................241.000.001.00----------------------------------------
..................................................................................................................................................................TTTTTTTTTTTCTTTTGAGACGTTTG..............................................................261.000.001.00----------------------------------------
.............................CGGAAACAGGGTGTCTTT...........................................................................................................................................................................................................1811.001.00----------------------------1.00------------
.................................................................................................................................................................TTTTTTTTTTTTCTTTTGAGACCCC................................................................251.000.00-1.00---------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTCTTC.....................................................................241.000.00-1.00---------------------------------------
............................................................................................................................................................................TCTTTTGAGACGGAGTCGCGC.........................................................211.000.00-1.00---------------------------------------
.............................................................................................................................................................................................TTGCTCTTGTCACCCAGGAG.........................................201.000.001.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTAGG......................................................................231.000.00--1.00--------------------------------------
...............................................................................................................................................................CTTTTTTTTTTTTTCTTTTGAGGGGG.................................................................261.000.00-1.00---------------------------------------
...........................................................................................................................................................................................................................GGCAAGATCTCGGCTCACT............1901.001.00---------------------------------1.00-------
...................................................................................................................................................................................................................................CTCGGCTCACTGCAACG......1701.001.00---------------1.00-------------------------
..............................................................................................................................................................CCTTTTTTTTTTTTTCTTTTAGGT....................................................................241.000.00-1.00---------------------------------------
........................................................................................................................................................................................................................AATGGCAAGATCTCGGCAA...............191.000.00----------------------------------------1.00
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTATAG....................................................................251.000.001.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTACCG....................................................................251.000.001.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTGTAG......................................................................231.000.00-1.00---------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTTGAGACAG.................................................................301.000.001.00----------------------------------------
........................................................................................................CTGGGCTGAGTACTATGGACCCTGAGGTT.....................................................................................................................2911.001.00----------1.00------------------------------
................................................................................................................................................................TTTTTTTTTTTTTCTTTTGAACC...................................................................231.000.00-1.00---------------------------------------
..............................................................................................................................................................CCTTTTTTTTTTTTTCTTTTATTG....................................................................241.000.00----1.00------------------------------------
.........................................................................................GTGGAAGAGGAAGCACTGACGT...........................................................................................................................................221.000.00-----------------1.00-----------------------
.............................................................................................AAGAGGAAGCACTGGAGTT..........................................................................................................................................191.000.00--------------------------1.00--------------
................................................................................................................................................................TTTTTTTTTTTTTCTTTTGAAAGG..................................................................241.000.00-1.00---------------------------------------
....................................................................................................................................................................TTTTTTTTTCTTTTGAGACGGAGTCTTGCCT.......................................................311.000.001.00----------------------------------------
..............................................................................................................................................................CCTTTTTTTTTTTTTCTTTACCG.....................................................................231.000.00----1.00------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTGTTAG...................................................................261.000.001.00----------------------------------------
.........................................................................................................................................................TGTGACCTTTTTTTTTTTTTCTTTTTATC....................................................................291.000.001.00----------------------------------------
...................................................................................................................................................................TTTTTTTTTTCTTTTGAGACGGAGCCCC...........................................................281.000.001.00----------------------------------------
.........................................................................................................................................................................................................................ATGGCAAGATCTCGGCTCACCGG..........231.000.00------------------------1.00----------------
...........................................................................................................................................................................TTCTTTTGAGACGGAGTCTTGCCGCG.....................................................261.000.00-1.00---------------------------------------
..............................................................................................................................................................CCTTTTTTTTTTTTTCTTTCTGG.....................................................................231.000.001.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTACG.....................................................................241.000.00-----1.00-----------------------------------
...........................................................................................................................................................................................................CAGGCCAGAGTGCAATGG.............................1801.001.00--------1.00--------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTTTGC.....................................................................261.000.001.00----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTAAGG......................................................................231.000.00--1.00--------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTTG.......................................................................2430.670.670.67----------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTTGAG.....................................................................2630.670.67-0.67---------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTGAGACGG.................................................................2830.670.67-0.67---------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTTGATGC...................................................................2830.330.330.33----------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTTGA......................................................................2530.330.330.33----------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTTGGG.....................................................................2630.330.670.33----------------------------------------
.............................................................................................................................................................ACCTTTTTTTTTTTTTCTTTTGAGAC...................................................................2660.170.170.17----------------------------------------
..............................................................................................................................................................CCTTTTTTTTTTTTTCTTTTGAGACGG.................................................................2770.140.14-0.14---------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTCGG......................................................................2590.110.110.11----------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTTGTG......................................................................2590.110.11-0.11---------------------------------------
...........................................................................................................................................................TGACCTTTTTTTTTTTTTCTTT.........................................................................2290.110.110.11----------------------------------------

Antisense strand
TAGGGGTTCCTGGGAATGGGACCCTTACCCGGAAACAGGGTGTCTTTGGGGTGAGGCATGGATAAGTGGAAGGTGATGGGGAGGGCAGAGTGGAAGAGGAAGCACTGGGCTGAGTACTATGGACCCTGAGGTTCCCTAACCCCCACCTGCCCCTGTGACCTTTTTTTTTTTTTCTTTTGAGACGGAGTCTTGCTCTTGTCACCCAGGCCAGAGTGCAATGGCAAGATCTCGGCTCACTGCAACGTCTGCC
............................................................................((.((.((((((.((((...(((.(((...(((((.........)).)))....))).))).....)))))))))))).)).............((((....))))....................................................................
...........................................................................76..........................................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189787DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189782SRR040007(GSM532892)
G601T. (cervix)		SRR038857(GSM458540)
D20. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
...............................................................................................................................................................................................GCTCTTGTCACCCAGGCTCTG...................................... 212.000.00-------------------1.00----------1.00----------
..........................................................................................................................................................................................GCCTGGGTGACAAGAGCAAGAC.......................................... 2202.002.00--------2.00--------------------------------
.............................................................................................................................................................................................................................CAAGATCTCGGCTCACTGCAAAAAA.... 251.000.00------------------------------------1.00----
............................................................................................................GCTGAGTACTATGGAGA............................................................................................................................. 171.000.00--------------1.00--------------------------
............................................................................................................GCTGAGTACTATGGAGC............................................................................................................................. 171.000.00--------------1.00--------------------------
............................................................................................................................CCTGAGGTTCCCTAAAA............................................................................................................. 171.000.00------1.00----------------------------------
....................................................................................................................................................................................................................GTGCAATGGCAAGATAG..................... 171.000.00------1.00----------------------------------
............................................................................................................................CCTGAGGTTCCCTAAAACA........................................................................................................... 191.000.00------1.00----------------------------------
.......................................GTGTCTTTGGGGTGAGACAC............................................................................................................................................................................................... 201.000.00------1.00----------------------------------
..........................................................................................................................................................GTGACCTTTTTTTTTTTTCGG........................................................................... 211.000.00---------------------------------------1.00-