ID: uc009ymr.1_intron_5_0_chr11_59368101_r
GENE: OSBP(1)
chr11:59368051-59368341-


(2)
AGO2.ip
(1)
B-CELL
(3)
BRAIN
(3)
BREAST
(9)
CELL-LINE
(4)
HEART
(6)
LIVER
(1)
OTHER
(9)
SKIN
(1)
XRN.ip

Sense strand
CTGGCAGCAATATCAGTGGAGCCAGCAGTGACATCAGCCTTGATGAACAGGTAATTCTTATATGGGAGATCTCAGAGGTGAGGGACGTGGGTTGTGATTCCCAAGGATTTTTTTTTTTTTTTTGTGAAGTGCTAAGAGAAACTGATTTTTTTTTCTTTTTTTAGCACGGGGGAAGGGAAGGTTATAAATACCAGGTTTTCTGTTCTTTGTGGGTGGTTGAATGGCTTTGTTTTGCTCTCAGTACAAGCATCAGCTGGAGGAGACCAAAAAGGAAAAGAGAACCAGAATACC
.........................................................................................................................................(((((.((((((((((((((((........)))))))))))))))).......(((..((..((..((.....))..))..)).)))....)))))..........................................................
.......................................................................................................................................136.................................................................................................236.....................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR343335GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR343336SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................................................................................................GGGTGGTTGAATGGCTTTGTTT...........................................................22112.0012.00--12.00--------------------------------------
............................................................................................................................................ACTGATTTTTTTTTCTTTTTTTTAG..............................................................................................................................258.000.006.002.00---------------------------------------
.........ATATCAGTGGAGCCAGCAGTG.....................................................................................................................................................................................................................................................................2113.003.00-----3.00-----------------------------------
.........................................................................................................................................................................................................................................................................AAAAAGGAAAAGAGAACCAGAATACC2613.003.00---2.001.00------------------------------------
..............................................................................................................................................TGATTTTTTTTTCTTTTTTTAGGTC............................................................................................................................252.000.00-2.00---------------------------------------
.......................................................................................................AGGATTTTTTTTTTTTTTTTCGGC....................................................................................................................................................................242.000.001.001.00---------------------------------------
............................................................................................................................................................................................................................................................................AAGGAAAAGAGAACCAGAATACC2312.002.00-------1.00----------------------1.00----------
............................................................................................................................................ACTGATTTTTTTTTCTTTTTTTAG...............................................................................................................................2412.002.002.00----------------------------------------
..........................................................................................................................................................................................................................................................................AAAAGGAAAAGAGAACCAGAATACC2512.002.00---2.00-------------------------------------
.............CAGTGGAGCCAGCAGTGACA..................................................................................................................................................................................................................................................................2012.002.00------1.00----------1.00-----------------------
........................................................................................................................................................................................................................................................ATCAGCTGGAGGAGACCA.........................1812.002.00----2.00------------------------------------
..............AGTGGAGCCAGCAGTGACATCAGCCTC..........................................................................................................................................................................................................................................................272.000.00-2.00---------------------------------------
.................................................................................................................................................................................................................................................................AGGAGACCAAAAAGGAAAAGAGAA..........2412.002.00---------2.00-------------------------------
......................................................................................................AAGGATTTTTTTTTTTTTTCTCT......................................................................................................................................................................232.000.00-2.00---------------------------------------
..........................................................................................................ATTTTTTTTTTTTTTTTGTGTTTT.................................................................................................................................................................241.000.001.00----------------------------------------
............................................................................................................................................ACTGATTTTTTTTTCTTTTTTACC...............................................................................................................................241.000.001.00----------------------------------------
.......................................................................................................AGGATTTTTTTTTTTTTTTTGGCCC...................................................................................................................................................................251.000.00-1.00---------------------------------------
..........................................................................................................ATTTTTTTTTTTTTTTTGTGAATTTA...............................................................................................................................................................261.000.001.00----------------------------------------
......GCAATATCAGTGGAGCCAGC.........................................................................................................................................................................................................................................................................2011.001.00---------------------------1.00-------------
......................................................................................................AAGGATTTTTTTTTTTTTTTCTT......................................................................................................................................................................231.000.001.00----------------------------------------
...............................................................................................................................................................................................................................................................GGAGGAGACCAAAAAGGAAAAGAG............2411.001.00----1.00------------------------------------
...............................................................................................................................................................................................................................................................GGAGGAGACCAAAAAGGA..................1811.001.00-------1.00---------------------------------
..........................................................................................................ATTTTTTTTTTTTTTTTGTGAACG.................................................................................................................................................................241.000.00-1.00---------------------------------------
............................................................................................................................................ACTGATTTTTTTTTCTTTTTTTCTG..............................................................................................................................251.000.00-1.00---------------------------------------
......................................................................................................AAGGATTTTTTTTTTTTTTACTT......................................................................................................................................................................231.000.001.00----------------------------------------
............................................................................................................................................ACTGATTTTTTTTTCTTTTTTTTTGT.............................................................................................................................261.000.00-1.00---------------------------------------
...........................................................................................................................................AACTGATTTTTTTTTCTTTTTTTGTA..............................................................................................................................261.000.00-1.00---------------------------------------
............TCAGTGGAGCCAGCAGTGACATCAGCCTTGACG......................................................................................................................................................................................................................................................331.000.00-1.00---------------------------------------
...................................................................................................................................................TTTTTTTCTTTTTTTAGCGTTT..........................................................................................................................221.000.00-1.00---------------------------------------
................................................................................................................................................................................................................GTGGGTGGTTGAATGGCTTTGTTT...........................................................2411.001.00--------------------1.00--------------------
............................................................................................................................................ACTGATTTTTTTTTCTTTTTTTGGA..............................................................................................................................251.000.00-1.00---------------------------------------
..............................................................................................................................................TGATTTTTTTTTCTTTTTTTACAG.............................................................................................................................241.000.001.00----------------------------------------
..............AGTGGAGCCAGCAGTGAC...................................................................................................................................................................................................................................................................1811.001.00-------------------1.00---------------------
..............................................................................................................................................TGATTTTTTTTTCTTTTTTTAATTT............................................................................................................................251.000.00-1.00---------------------------------------
......................................................................................................AAGGATTTTTTTTTTTTTTTTCAGC....................................................................................................................................................................251.000.001.00----------------------------------------
................................................................................................................................................................................................................GTGGGTGGTTGAATGGCTTTGT.............................................................2211.001.00--------------------------1.00--------------
............................................................................................................................................ACTGATTTTTTTTTCTTTTTTTAGCACGGGG........................................................................................................................3111.001.001.00----------------------------------------
.........ATATCAGTGGAGCCAGCAGTGACATC................................................................................................................................................................................................................................................................2611.001.00------------------1.00----------------------
..........................................................................................................................................................................................................................................................................AAAAGGAAAAGAGAACCAGAG....211.000.00---------------1.00-------------------------
.......................................................................................................................................................................................................................................................CATCAGCTGGAGGAGACCA.........................1911.001.00------------1.00----------------------------
..................................................................................................................................................................................................................................................................................AAGAGAACCAGAATACC1711.001.00---1.00-------------------------------------
.................................................................................................................................................TTTTTTTTTCTTTTTTTAGCTCGG..........................................................................................................................241.000.00-1.00---------------------------------------
.........ATATCAGTGGAGCCAGCAGTGACATCAGCC............................................................................................................................................................................................................................................................3011.001.00-------------1.00---------------------------
...............................................................................................................................................................................................................................................................................GAAAAGAGAACCAGAATACC2011.001.00----1.00------------------------------------
......................................................................................................................................................................................................................................................................ACCAAAAAGGAAAAGAGAACCAGAAT...2611.001.00---------------------1.00-------------------
..............AGTGGAGCCAGCAGTGACATCAGCCTTGACG......................................................................................................................................................................................................................................................311.000.00-1.00---------------------------------------
.....................................................................................................................................................................................................................................................................GACCAAAAAGGAAAAGAGAACCAGA.....2511.001.00-----1.00-----------------------------------
.......................................................................................................AGGATTTTTTTTTTTTTTTTCTCT....................................................................................................................................................................241.000.001.00----------------------------------------
...........................................................................................................................................................................................................................................................................AAAGGAAAAGAGAACCAGAATACCG251.000.00----------------------------1.00------------
................................................................................................................................................................................................AGGTTTTCTGTTCTTTGTGGGAGG...........................................................................241.000.001.00----------------------------------------
............................................................................................................................................ACTGATTTTTTTTTCTTTTTACTG...............................................................................................................................241.000.00-1.00---------------------------------------
.........................................................................................................................................................................................................................................................................AAAAAGGAAAAGAGAACCAGAA....2221.001.00------0.50-----------------------------0.50----
.......................................................................................................AGGATTTTTTTTTTTTTTTTGTGGCGC.................................................................................................................................................................271.000.00-1.00---------------------------------------
.........................................................................................................................................................................................................................TGAATGGCTTTGTTTCGG........................................................181.000.001.00----------------------------------------
.....................................................................................................................................................................................................................................................................GACCAAAAAGGAAAAGAGAA..........2011.001.00------1.00----------------------------------
....................................................................................................................................................TTTTTTCTTTTTTTAGCTTGG..........................................................................................................................211.000.00----------1.00------------------------------
............................................................................................................................................ACTGATTTTTTTTTCTTTTTTTTAGG.............................................................................................................................261.000.001.00----------------------------------------
....................................................................................................CCAAGGATTTTTTTTTTTTTTTTTAGT....................................................................................................................................................................271.000.00-----------------------------1.00-----------
......................................................................................................AAGGATTTTTTTTTTTTTTTCTCT.....................................................................................................................................................................241.000.001.00----------------------------------------
.................................................................................................................................................................................................................................................TACAAGCATCAGCTGGAGGAGAC...........................2311.001.00--------------1.00--------------------------
......................................................................................................AAGGATTTTTTTTTTTTTTTTAT......................................................................................................................................................................231.000.00----------------------1.00------------------
.......................................................................................................AGGATTTTTTTTTTTTTTTTGGCGG...................................................................................................................................................................251.000.001.00----------------------------------------
...........................................................................................................TTTTTTTTTTTTTTTTGTGAACGCT...............................................................................................................................................................251.000.00----------1.00------------------------------
.......................................................................................................AGGATTTTTTTTTTTTTTTTGCGGC...................................................................................................................................................................251.000.001.00----------------------------------------
.....................................................................................................................................................................................................................................................AGCATCAGCTGGAGGAGA............................1811.001.00------1.00----------------------------------
............................................................................................................................................ACTGATTTTTTTTTCTTTTTTTTTTA.............................................................................................................................261.000.001.00----------------------------------------
.......................................................................................................AGGATTTTTTTTTTTTTTTTCCC.....................................................................................................................................................................231.000.001.00----------------------------------------
............................................................................................................................................ACTGATTTTTTTTTCTTTTTCTTC...............................................................................................................................241.000.00-1.00---------------------------------------
..........TATCAGTGGAGCCAGCAGTGACATCAGCCT...........................................................................................................................................................................................................................................................3011.001.00-----------------------1.00-----------------
.......................................................................................................AGGATTTTTTTTTTTTTTTTGTCGTC..................................................................................................................................................................261.000.001.00----------------------------------------
.......................................................................................................AGGATTTTTTTTTTTTTTTTCACC....................................................................................................................................................................241.000.001.00----------------------------------------
...........................................................................................................................................................................................................................................................................AAAGGAAAAGAGAACCAGA.....1920.500.50-----------------------------------0.50-----
.........................................................................................................................................................................................................................................................................AAAAAGGAAAAGAGAACCAGAAT...2320.500.50---------------------------------0.50-------
...................................................................................................................................................................................................................................................................................AGAGAACCAGAATACC1620.500.50---0.50-------------------------------------
........................................................................................................................................................................................................................................................................CAAAAAGGAAAAGAGAACC........1920.500.50-------------------------------0.50---------
.............................................................................................................................................................................................................................................................................AGGAAAAGAGAACCAGAA....1820.500.50--------------------------------0.50--------
.....................................................................................................................................................................................................................................TTTTGCTCTCAGTACA..............................................1620.500.50----------------------------------0.50------
.........................................................................................................................................................................................................................................................................AAAAAGGAAAAGAGAACCA.......1930.330.33-------------------------------------0.33---
.........................................................................................................................................................................................................................................................................AAAAAGGAAAAGAGAACC........1850.200.20--------------------------------------0.20--
..........................................................................................................................................................................................................................................................CAGCTGGAGGAGACCA.........................1660.170.17---------------------------------------0.17-
......................................................................................................................................AGAGAAACTGATTTTTT............................................................................................................................................1780.120.12----------------------------------------0.12

Antisense strand
CTGGCAGCAATATCAGTGGAGCCAGCAGTGACATCAGCCTTGATGAACAGGTAATTCTTATATGGGAGATCTCAGAGGTGAGGGACGTGGGTTGTGATTCCCAAGGATTTTTTTTTTTTTTTTGTGAAGTGCTAAGAGAAACTGATTTTTTTTTCTTTTTTTAGCACGGGGGAAGGGAAGGTTATAAATACCAGGTTTTCTGTTCTTTGTGGGTGGTTGAATGGCTTTGTTTTGCTCTCAGTACAAGCATCAGCTGGAGGAGACCAAAAAGGAAAAGAGAACCAGAATACC
.........................................................................................................................................(((((.((((((((((((((((........)))))))))))))))).......(((..((..((..((.....))..))..)).)))....)))))..........................................................
.......................................................................................................................................136.................................................................................................236.....................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR343335GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR343336SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................................................................................AAGTGCTAAGAGAAATAAC.................................................................................................................................................. 192.000.00-----------1.00-------------1.00---------------
..................................................................................................................................................................................................GTTTTCTGTTCTTTGTGGATCT........................................................................... 221.000.00------------------------1.00----------------
......................................................................................................................TTTTTGTGAAGTGCTACAAA......................................................................................................................................................... 201.000.00--------1.00--------------------------------
.............CAGTGGAGCCAGCAGTGCTCG................................................................................................................................................................................................................................................................. 211.000.00----------------1.00------------------------
....................................................................................................................TTTTTTTGTGAAGTGTAAG............................................................................................................................................................ 191.000.00--------1.00--------------------------------