ID: uc009yll.1_intron_1_0_chr11_47270416_f.5p
GENE: (2)
chr11:47270366-47270615+


(1)
AGO2.ip 		(8)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(17)
CELL-LINE 		(4)
CERVIX 		(1)
HEART 		(2)
HELA 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(10)
SKIN 		(1)
XRN.ip

Sense strand
AAGCTGGAACCCGCTGGGTGGCACCTGCAAGCAGCCGCCCGGACGCACCCGTAAGGACACACGCCGGAAGTGCGTTCGCCGCCATCTTACTTAGGGACCTGCTGGGGTGCGGGGAAAAGGCGCAGTCTCGGTGGGATTGCGTGCAGGAGGGTCGTGGTCTGGCTGTGGCGGAGGAGCATAAGAAGGTAACGCGACCTGGCGCGGCAGACAGGGCTCGAAGACCTCATCTTGATTAAGAAGGCCACAAATT
........................................................................................................................................((((((((....((((((((..((..((...((......))...))..))...)))))))).))))).)))...........................................
.............................................................................................................................126................................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR040022(GSM532907)
G575N. (cervix)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR040017(GSM532902)
G645T. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR038857(GSM458540)
D20. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................GTGGGATTGCGTGCAGGAG.....................................................................................................1914.004.00---------2.00---2.00----------------------------------------
...............................................................................................................................TCGGTGGGATTGCGTGC..........................................................................................................1714.004.00-3.00------------------1.00---------------------------------
...........................................................................................................................AGTCTCGGTGGGATTGCGTG...........................................................................................................2012.002.002.00-----------------------------------------------------
..................................................................................................................................................GAGGGTCGTGGTCTGGCTG.....................................................................................1912.002.001.00---------------------1.00-------------------------------
............................................................................................................................................................................................ACGCGACCTGGCGCGGCAGACAGGGCTCGAAG..............................3212.002.00--2.00---------------------------------------------------
..............................................................................................................................................................CTGGCTGTGGCGGAGGAG..........................................................................1812.002.00-----1.00------------------1.00-----------------------------
..................................................................................................................................GTGGGATTGCGTGCAGGA......................................................................................................1812.002.002.00-----------------------------------------------------
..................................................................................................................................GTGGGATTGCGTGCAGGAGGG...................................................................................................2112.002.002.00-----------------------------------------------------
........................................................................................................................................................CGTGGTCTGGCTGTGGCGGA..............................................................................2012.002.00-2.00----------------------------------------------------
..............................................................................................................................CTCGGTGGGATTGCGTGC..........................................................................................................1812.002.00--1.001.00--------------------------------------------------
.....................................................................................................................................................................TGGCGGAGGAGCATAAGAAG.................................................................2011.001.00-1.00----------------------------------------------------
..........................................................................................................................................................TGGTCTGGCTGTGGCGGAGG............................................................................2011.001.00------1.00-----------------------------------------------
............................................................................................AGGGACCTGCTGGGGTGCGGGGAA......................................................................................................................................2411.001.00-------------------------------1.00----------------------
.............................................................................................................................................................TCTGGCTGTGGCGGAGGGG..........................................................................191.000.001.00-----------------------------------------------------
............................................................................................AGGGACCTGCTGGGGTGCGGGGAAAAGGCGCAGT............................................................................................................................3411.001.00------1.00-----------------------------------------------
........................................................................................................................................................................CGGAGGAGCATAAGAAGG................................................................1811.001.00--------------1.00---------------------------------------
..............................................................................................................................................GCAGGAGGGTCGTGGTCTG.........................................................................................1911.001.00----------1.00-------------------------------------------
.....................................................................................................CTGGGGTGCGGGGAAAAGGCGCAGTCT..........................................................................................................................2711.001.00-----------1.00------------------------------------------
......................................................................................................................................................GTCGTGGTCTGGCTGTGGC.................................................................................1911.001.001.00-----------------------------------------------------
............................................................................................................................GTCTCGGTGGGATTGCGTGCAGG.......................................................................................................2311.001.00------------1.00-----------------------------------------
........................................................................................................................................................CGTGGTCTGGCTGTGGCGGAGGAGC.........................................................................2511.001.00-----------------1.00------------------------------------
......................................................................................................TGGGGTGCGGGGAAATTTT.................................................................................................................................191.000.00-------------------------------------------------1.00----
.......................................................................................................................................................................GCGGAGGAGCATAAGAAGGTA..............................................................2111.001.00----------------1.00-------------------------------------
..........................................................................................................................................................................GAGGAGCATAAGAAGGTA..............................................................1811.001.00------------------------------------------------1.00-----
...................................................................................ATCTTACTTAGGGACCTGCTGGGGTGCGG..........................................................................................................................................2911.001.00------------1.00-----------------------------------------
...................................................................................................................................................AGGGTCGTGGTCTGGCTGT....................................................................................1911.001.00--------------------------------------------1.00---------
..............................................................................................................................CTCGGTGGGATTGCGTGCC.........................................................................................................1911.002.00------------------------------1.00-----------------------
....................................................................................................................................................GGGTCGTGGTCTGGCGGGG...................................................................................191.000.00-----------------------1.00------------------------------
................................................................CGGAAGTGCGTTCGCCGC........................................................................................................................................................................1811.001.00--------------------------------------------------1.00---
...........................................................................................................................................................GGTCTGGCTGTGGCGCGA.............................................................................181.000.00-------------------------1.00----------------------------
..........................................................................................................................................GCGTGCAGGAGGGTCGTG..............................................................................................1811.001.00-1.00----------------------------------------------------
.........................................................................................................................................................GTGGTCTGGCTGTGGCGG...............................................................................1811.001.00-----1.00------------------------------------------------
............................................................................................................................GTCTCGGTGGGATTGCGTGC..........................................................................................................2011.001.00---1.00--------------------------------------------------
........................................................................................................................................................................................................GCGGCAGACAGGGCTCGA................................1811.001.00-----------------------------1.00------------------------
......................................................................................................................................................GTCGTGGTCTGGCTGTGG..................................................................................1811.001.00-1.00----------------------------------------------------
......................................................................................................................................................................GGCGGAGGAGCATAAGAAGGTAA.............................................................2311.001.00----------1.00-------------------------------------------
.....................................................................................................................................................GGTCGTGGTCTGGCTGGGG..................................................................................191.000.001.00-----------------------------------------------------
..............................................................................................................................CTCGGTGGGATTGCGTGCAG........................................................................................................2011.001.00-------1.00----------------------------------------------
...................................................................................................................................................................................................CTGGCGCGGCAGACAGGGC....................................1911.001.00---------------------------------------------------1.00--
......................................................................................................................................................GTCGTGGTCTGGCTGGGGC.................................................................................191.000.001.00-----------------------------------------------------
.......................................................................................................................GCGCAGTCTCGGTGGG...................................................................................................................1611.001.00---------------1.00--------------------------------------
.............................................................................................................................................................TCTGGCTGTGGCGGAGGG...........................................................................181.000.00-----1.00------------------------------------------------
................................................................................................................................CGGTGGGATTGCGTGCAG........................................................................................................1811.001.00--------------1.00---------------------------------------
.............................................................................................................................TCTCGGTGGGATTGCGTG...........................................................................................................1811.001.00------------------1.00-----------------------------------
.....................................................................................................CTGGGGTGCGGGGAAAAGG..................................................................................................................................1911.001.00-----------------------------------------1.00------------
.................................................................................................................GAAAAGGCGCAGTCTCGG.......................................................................................................................1811.001.001.00-----------------------------------------------------
...................................................................................................................................................................................................CTGGCGCGGCAGACAGCCC....................................191.000.00---------------------------------------1.00--------------
.....................................................................................CTTACTTAGGGACCTGTT...................................................................................................................................................181.000.00-----------------------------------1.00------------------
..............................................................................................................................................................CTGGCTGTGGCGGAGGAGC.........................................................................1911.001.00--------1.00---------------------------------------------
.....................................................................................CTTACTTAGGGACCTGTA...................................................................................................................................................181.000.00--------------------------------------1.00---------------
..............................................................................................................................................GCAGGAGGGTCGTGGTCTA.........................................................................................191.000.00-1.00----------------------------------------------------
..................................................................................................................................................................................................CCTGGCGCGGCAGACAGGGCTCGAAGA.............................2711.001.00--------------------------1.00---------------------------
...................................................................................ATCTTACTTAGGGACCTGC....................................................................................................................................................1911.001.00-------------------------------------------1.00----------
..................................................................................................................................................................CTGTGGCGGAGGAGCATAAGAAGG................................................................2411.001.00--------------------------------1.00---------------------
..............................................................................................................................CTCGGTGGGATTGCGTG...........................................................................................................1711.001.00---1.00--------------------------------------------------
......................................................................................................................................................................GGCGGAGGAGCATAAGAAGG................................................................2011.001.00---------------------------------1.00--------------------
.........................................................................................................................GCAGTCTCGGTGGGATTG...............................................................................................................1811.001.00-----------------------------------------------1.00------
.....................................................................................................................................................GGTCGTGGTCTGGCTGTGG..................................................................................1911.001.001.00-----------------------------------------------------
....................................................AAGGACACACGCCGGAAGTGC.................................................................................................................................................................................2111.001.00-----------1.00------------------------------------------
...................................................................................................................................................AGGGTCGTGGTCTGGCTGTG...................................................................................2011.001.00------------------------------------------1.00-----------
..............................................................................................................................CTCGGTGGGATTGCGTGCAGGAGG....................................................................................................2411.001.00----------------------------------------1.00-------------
..........................................................................................................................CAGTCTCGGTGGGATTGC..............................................................................................................1811.001.00---1.00--------------------------------------------------
.....................................CCCGGACGCACCCGTAAGGAC................................................................................................................................................................................................2111.001.001.00-----------------------------------------------------
........................................................................................................................CGCAGTCTCGGTGGGAT.................................................................................................................1711.001.00--1.00---------------------------------------------------
.........................................................................................................................................................................................GTAACGCGACCTGGCGCGGC.............................................2011.001.00------------------------------------1.00-----------------
..............................................................................................................................................................CTGGCTGTGGCGGAGGAGCA........................................................................2011.001.00---------------1.00--------------------------------------
...........................................................................................................................................CGTGCAGGAGGGTCGTGG.............................................................................................1811.001.00------1.00-----------------------------------------------
.............................AGCAGCCGCCCGGACGAAG..........................................................................................................................................................................................................191.000.00-------------------1.00----------------------------------
...................................................................................................................................................AGGGTCGTGGTCTGGCTG.....................................................................................1811.001.00--------1.00---------------------------------------------
............................................................................................AGGGACCTGCTGGGGTG.............................................................................................................................................1720.500.50----------------0.50-------------------------------------
....................................................................................................................................................................................................................................TTGATTAAGAAGGCC.......1540.250.25----------------------------------------------------0.25-

Antisense strand
AAGCTGGAACCCGCTGGGTGGCACCTGCAAGCAGCCGCCCGGACGCACCCGTAAGGACACACGCCGGAAGTGCGTTCGCCGCCATCTTACTTAGGGACCTGCTGGGGTGCGGGGAAAAGGCGCAGTCTCGGTGGGATTGCGTGCAGGAGGGTCGTGGTCTGGCTGTGGCGGAGGAGCATAAGAAGGTAACGCGACCTGGCGCGGCAGACAGGGCTCGAAGACCTCATCTTGATTAAGAAGGCCACAAATT
........................................................................................................................................((((((((....((((((((..((..((...((......))...))..))...)))))))).))))).)))...........................................
.............................................................................................................................126................................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR040022(GSM532907)
G575N. (cervix)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR040017(GSM532902)
G645T. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR038857(GSM458540)
D20. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................CCCCAGCAGGTCCCTAAGTAAGATGGC............................................................................................................................................... 2712.002.00----2.00-------------------------------------------------
..............................................................CGAACGCACTTCCGGC............................................................................................................................................................................ 1612.002.00-------2.00----------------------------------------------
....................................TCCTTACGGGTGCGTCCGGGC................................................................................................................................................................................................. 2111.001.00----------------------------------1.00-------------------
...............................CTTACGGGTGCGTCCGGGCGGCTG................................................................................................................................................................................................... 2411.001.00----------------------------1.00-------------------------
................................................................................TCCCTAAGTAAGATGGC......................................................................................................................................................... 1711.001.00----1.00-------------------------------------------------
...............................................................CCGGAAGTGCGTTCGGGG......................................................................................................................................................................... 181.000.00---------------------------1.00--------------------------
..................................................................................................CTGCTGGGGTGCGGGGAACG.................................................................................................................................... 201.000.00---------------------------------------------1.00--------
..............................................................................................................................................................CTGGCTGTGGCGGAGGCC.......................................................................... 181.000.00-------------------------------------1.00----------------
..............................................................GCCGGAAGTGCGTTCCC........................................................................................................................................................................... 171.000.00---------------------1.00--------------------------------
.......................TGCGTCCGGGCGGCTGCTTGCAGG........................................................................................................................................................................................................... 2411.001.00----------------------------------------------1.00-------
................................................................................CCTAAGTAAGATGGC........................................................................................................................................................... 1570.290.29----0.14------------------------------------------------0.14