ID: uc009yke.1_intron_4_0_chr11_34673158_f.3p
GENE: (5)
chr11:34678255-34678504+


(9)
BREAST 		(14)
CELL-LINE 		(13)
CERVIX 		(8)
HEART 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
TCTATCTCCATTTCTTAACCTGCATCATTTTTCTCCATAGCATTTATCATCTCTGTTTTGTTTGGTTCACTAGCACATACTCAAAGGTGCCAGGCATGCAGTAGGTGCTCAGTAAATATTGTTTAAATGAGTGGATGCATGAATAAAAAAGAGAATTATAGGAAATAGGTCAATTAAACGCCTCTCATTTTTCTCCTTAGCAGAGTCACCTGATATGAAAAAGGAGCAAGACCCCCCTGCCAAGTGCCAC
..................................................((((((..(((((((..((((..............))))))))))).)))).))..(((((.(((((...)))))..)))))......................................................................................................................
..................................................51...............................................................................132....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		GSM532890(GSM532890)
G576T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR040024(GSM532909)
G613N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532883(GSM532883)
G871N. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		GSM532887(GSM532887)
G761N. (cervix)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191523(GSM715633)
107genomic small RNA (size selected RNA from . (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		GSM532880(GSM532880)
G659T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM532879(GSM532879)
G659N. (cervix)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................GTAAATATTGTTTAACC..........................................................................................................................17229.000.0066.0036.0030.0017.0013.0010.008.008.00-1.00-4.00-5.003.005.004.00--2.00-1.00--1.00--1.00----1.00-------1.00---1.001.00--1.00--1.001.00-1.00--1.00-1.001.00-1.001.00-1.00----
...............................................................................................................GTAAATATTGTTTAACCA.........................................................................................................................1836.000.00-1.003.00----1.002.005.002.00---1.00--2.002.001.002.001.002.002.00---1.002.00--2.00----------1.001.00-----------------1.00-----1.00--
...............................................................................................................GTAAATATTGTTTAACCAA........................................................................................................................1916.000.00--------2.001.00----1.00---1.00--1.00----2.00------2.00----1.00--------1.00-------1.00--1.00-----1.00-1.00---
..............................................................................................................AGTAAATATTGTTTAACC..........................................................................................................................1810.000.001.001.001.001.00------3.00---------1.00------------------1.00----------1.00-------------------
...............................................................................................................GTAAATATTGTTTAACA..........................................................................................................................178.000.00--------3.00---4.00-------------------1.00-------------------------------------
...............................................................................................................GTAAATATTGTTTAACCAC........................................................................................................................192.000.00-----------2.00----------------------------------------------------------
.............................TTTCTCCATAGCATTGTTC..........................................................................................................................................................................................................191.000.00-------------------------------------------------1.00--------------------
..............................................................................................................AGTAAATATTGTTTAACA..........................................................................................................................181.000.00----------------------1.00-----------------------------------------------
...............................................................................................................GTAAATATTGTTTAAATAAAA......................................................................................................................211.000.00-----------------------------------------1.00----------------------------
..............................................................................ACTCAAAGGTGCCAGGCATGCAGTAG..................................................................................................................................................2611.001.00--------------------------------------------------------1.00-------------
....................................................................................................................................GGATGCATGAATAAAAAAG...................................................................................................1911.001.00------------------------------1.00---------------------------------------
...............................................................................................................GTAAATATTGTTTAACAAA........................................................................................................................191.000.00--------1.00-------------------------------------------------------------
.....................................................TGTTTTGTTTGGTTCCGTT..................................................................................................................................................................................191.000.00-----------------------------------------------------1.00----------------
................................................................................................................................................................................................................................AGCAAGACCCCCCTGCCAAGTG....2211.001.00------------------------------1.00---------------------------------------
....TCTCCATTTCTTAACCTTTTG.................................................................................................................................................................................................................................211.000.00-------------------------1.00--------------------------------------------
..................................................................................................................................................................................................................TGATATGAAAAAGGAGCAAGACCCCCCTGCC.........3111.001.00----------------------------------------------1.00-----------------------
.....................................................................................................................................................................................................................TATGAAAAAGGAGCAAGACCCCC..............2311.001.00-------------------------------------1.00--------------------------------
..................................................................................................................................................................................................................TGATATGAAAAAGGAGCAAGAC..................2211.001.00------------------------------------1.00---------------------------------
...............................................................................................................GTAAATATTGTTTAACCC.........................................................................................................................181.000.00-----------------1.00----------------------------------------------------
..........................................................................................................................................................................................................................AAAAGGAGCAAGACCCCCCTGC..........2211.001.00-----------------------------1.00----------------------------------------
..............................................................................................................AGTAAATATTGTTTAACCA.........................................................................................................................191.000.00------1.00---------------------------------------------------------------
...............................................................................................................GTAAATATTGTTTAACCCA........................................................................................................................191.000.00--------------------------------------------------------------------1.00-
......................................................................................................................TTGTTTAAATGAGTGGATGCA...............................................................................................................2111.001.00-----------------------------1.00----------------------------------------
..............................................................................................................AGTAAATATTGTTTAACCAA........................................................................................................................201.000.00------------------------1.00---------------------------------------------
..........TTTCTTAACCTGCATCATTTT...........................................................................................................................................................................................................................2111.001.00------------1.00---------------------------------------------------------
..............................................................................................................AGTAAATATTGTTTAAAC..........................................................................................................................181.000.00----------1.00-----------------------------------------------------------
......................................................................................................................................................................................................................................ACCCCCCTGCCAAGTGC...1720.500.50------------------------------------0.50---------------------------------
.............................................ATCATCTCTGTTTTGTTTG..........................................................................................................................................................................................1920.500.50---------------------------------------------------------------------0.50

Antisense strand
TCTATCTCCATTTCTTAACCTGCATCATTTTTCTCCATAGCATTTATCATCTCTGTTTTGTTTGGTTCACTAGCACATACTCAAAGGTGCCAGGCATGCAGTAGGTGCTCAGTAAATATTGTTTAAATGAGTGGATGCATGAATAAAAAAGAGAATTATAGGAAATAGGTCAATTAAACGCCTCTCATTTTTCTCCTTAGCAGAGTCACCTGATATGAAAAAGGAGCAAGACCCCCCTGCCAAGTGCCAC
..................................................((((((..(((((((..((((..............))))))))))).)))).))..(((((.(((((...)))))..)))))......................................................................................................................
..................................................51...............................................................................132....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		GSM532890(GSM532890)
G576T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR040024(GSM532909)
G613N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532883(GSM532883)
G871N. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		GSM532887(GSM532887)
G761N. (cervix)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191523(GSM715633)
107genomic small RNA (size selected RNA from . (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		GSM532880(GSM532880)
G659T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM532879(GSM532879)
G659N. (cervix)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................................................................................AAAAAGAGAATTATAGCTTT..................................................................................... 202.000.00-----------------------------------2.00----------------------------------
...................................................................................................................................................AAAGAGAATTATAGGCCC..................................................................................... 181.000.00-------------------------1.00--------------------------------------------
................................................................................................................................................AAAAAAGAGAATTATAGGTTG..................................................................................... 211.000.00----------------------------------1.00-----------------------------------
................................................................................................................................................AAAAAAGAGAATTATAGGTTTG.................................................................................... 221.000.00----------------------------------1.00-----------------------------------
................AGAAAAATGATGCAGGTT........................................................................................................................................................................................................................ 1840.500.50-----------------------0.50----------------------------------------------