ID: uc009ycv.1_intron_8_0_chr11_1466233_f
GENE: BRSK2(9)
chr11:1466183-1466573+


(2)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(12)
CELL-LINE 		(17)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(1)
OTHER 		(22)
SKIN

Sense strand
GTTTCTCTTTCCTTGTAGCTAGAGCACATTCAGAAACACATATGGTATATGTAAGTAGCTTTTCCACCCACTAATCGCCTGCTTTGCCTGTTGCTGTGGCCTGGAGGCCCTGCTAGGAAAGGCGGGGGGAGGGCGCCGGCCCAGCGCAGGTCCTGCCCTGCCTTGGCCCTCCGTGGCCTGCGCTGGGTGCGGGGTGCGGGCAGGACGCAGGAGGCCTCCCCGGGCTGGGCACAGGGAGAGTGGCAGGATGAAGGGCCCCAGGTGAGGGCGGGCGTCCCACCCTCGCAGCCGCCCAGGCCCGGCCGGAGCTGATGAGCGGGTGGCCCGTCCTGTGTCCACAGAGGGGGCAAGAATGAGCCCGAACCAGAGCAGCCCATTCCTCGCAAGGTGC
.........................................................................................................................((((((((.((((....))))...(((((......))))).....)))))))).(((((((((........)))))))))..............................................................................................................................................................................................
.....................................................................................................................118..................................................................................203..........................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR040008(GSM532893)
G727N. (cervix)		SRR040018(GSM532903)
G701N. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040016(GSM532901)
G645N. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040031(GSM532916)
G013T. (cervix)		SRR037931(GSM510469)
293GFP. (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM532884(GSM532884)
G871T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577579(Rovira)
total RNA. (breast)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
..........................................................................................................................CGGGGGGAGGGCGCCGGC...........................................................................................................................................................................................................................................................18116.0016.00-1.001.002.001.001.00--1.00----1.00------1.00----1.00-----1.00-----1.00---1.00-1.00------------1.00-1.00------
..........................................................................................................................CGGGGGGAGGGCGCCGGCG..........................................................................................................................................................................................................................................................19112.0016.003.001.003.00-1.00-----1.00--1.00--------------1.00-----------------------1.00------------
..........................................................................................................................CGGGGGGAGGGCGCCGGCGGC........................................................................................................................................................................................................................................................2115.0016.001.001.00-------1.00---------1.00-------------------------1.00-------------------
...........................................................................................................................GGGGGGAGGGCGCCGGCG..........................................................................................................................................................................................................................................................1815.004.00-1.00---------------------------------1.00---1.00---------1.00------------1.00--
............................................................................................................................GGGGGAGGGCGCCGGCG..........................................................................................................................................................................................................................................................174.000.002.001.00---------------------------1.00-----------------------------------
...........................................................................................................................GGGGGGAGGGCGCCGGC...........................................................................................................................................................................................................................................................1714.004.00----------------1.001.00----1.00---1.00--------------------------------------
..........................................................................................................................CGGGGGGAGGGCGCCGG............................................................................................................................................................................................................................................................1713.003.00---1.00-----------------1.00-------------------------------------1.00-----
............................................................................................................................GGGGGAGGGCGCCGGCGGC........................................................................................................................................................................................................................................................192.000.00--------------------------------1.00------------------------1.00-------
...........................................................................................................................GGGGGGAGGGCGCCGGCGGC........................................................................................................................................................................................................................................................2012.004.00--------1.00-1.00------------------------------------------------------
..........................................................................................................................CGGGGGGAGGGCGCCGGCGG.........................................................................................................................................................................................................................................................2012.0016.00------------------------------1.00-------------1.00--------------------
.....TCTTTCCTTGTAGCTAGAGCACATTCAGAA....................................................................................................................................................................................................................................................................................................................................................................3012.002.00----------------------------------1.00-----1.00------------------------
....................................................................................................................................................................................CGCTGGGTGCGGGGTGCGG................................................................................................................................................................................................1912.002.00-----------1.00--------------------------------------1.00--------------
..........................................................................................................................CGGGGGGAGGGCGCCGGACG.........................................................................................................................................................................................................................................................2011.003.00--1.00--------------------------------------------------------------
.......................................................................................................................................................................................................................CTCCCCGGGCTGGGCACGCG............................................................................................................................................................201.000.00------------1.00----------------------------------------------------
..................................................................................................................................................................................................................................GGGCACAGGGAGAGTCCCC..................................................................................................................................................191.000.00-------1.00---------------------------------------------------------
..........................................................................................................................CGGGGGGAGGGCGCCGA............................................................................................................................................................................................................................................................1711.001.00-----------1.00-----------------------------------------------------
..........................................................................................................................CGGGGGGAGGGCGCCCGC...........................................................................................................................................................................................................................................................181.000.00-----1.00-----------------------------------------------------------
..........................................................................................................................CGGGGGGAGGGCGCCGCTG..........................................................................................................................................................................................................................................................1911.001.00-------------------------------------------------------1.00---------
...........................................................................................................................GGGGGGAGGGCGCCGGAA..........................................................................................................................................................................................................................................................181.000.001.00----------------------------------------------------------------
.............................................................................................................................GGGGAGGGCGCCGGCGT.........................................................................................................................................................................................................................................................171.000.00-------1.00---------------------------------------------------------
..........................................................................................................................CGGGGGGAGGGCGCCGCGG..........................................................................................................................................................................................................................................................1911.001.001.00----------------------------------------------------------------
..........................................................................................................................CGGGGGGAGGGCGCCG.............................................................................................................................................................................................................................................................1611.001.00---------------1.00-------------------------------------------------
...........................................................................................................................GGGGGGAGGGCGCCGTGT..........................................................................................................................................................................................................................................................181.000.00----1.00------------------------------------------------------------
..................................................................................................................AGGAAAGGCGGGGGGCTGT..................................................................................................................................................................................................................................................................191.000.00------------------------------------------------------------1.00----
........................................................................................................................GGCGGGGGGAGGGCGCCGG............................................................................................................................................................................................................................................................1911.001.00---------------------------------------------------1.00-------------
.............................................................................................................................................................................................................................................GAGTGGCAGGATGAAGGGGCAG....................................................................................................................................221.000.00------------------------------------1.00----------------------------
............................................................................................................................................................................................................................CGGGCTGGGCACAGGGAGAG.......................................................................................................................................................2011.001.00----------------------------------------------1.00------------------
..........................................................................................................................CGGGGGGAGGGCGCCGCC...........................................................................................................................................................................................................................................................1811.001.00------------------------------------------1.00----------------------
...................................................................................................................................................................................GCGCTGGGTGCGGGGGCA..................................................................................................................................................................................................181.000.00---------------------------1.00-------------------------------------
....................................................................................................................................................................................CGCTGGGTGCGGGGTGCGTC...............................................................................................................................................................................................201.000.00-----------------------------------------------1.00-----------------
......................................................................................................................................................................................CTGGGTGCGGGGTGCGTT...............................................................................................................................................................................................181.000.00------------1.00----------------------------------------------------
.............................................................................................................................GGGGAGGGCGCCGGCGGAT.......................................................................................................................................................................................................................................................191.000.00---------------------------------1.00-------------------------------
...............................................................CCACCCACTAATCGCCTGC.....................................................................................................................................................................................................................................................................................................................1911.001.00---1.00-------------------------------------------------------------
..........................................................................................................................CGGGGGGAGGGCGCCGGGG..........................................................................................................................................................................................................................................................1911.003.00------------------------------------------------------1.00----------
.......................................................................................................................................................................................TGGGTGCGGGGTGCGGGC..............................................................................................................................................................................................1811.001.00------1.00----------------------------------------------------------
.............................................................................................................................................................................................................................................GAGTGGCAGGATGAAGGGTCGT....................................................................................................................................221.000.00------------------------------------------------1.00----------------
....................................................................................................................................GCGCCGGCCCAGCGC....................................................................................................................................................................................................................................................1590.110.11----------------------------------------------------------------0.11

Antisense strand
GTTTCTCTTTCCTTGTAGCTAGAGCACATTCAGAAACACATATGGTATATGTAAGTAGCTTTTCCACCCACTAATCGCCTGCTTTGCCTGTTGCTGTGGCCTGGAGGCCCTGCTAGGAAAGGCGGGGGGAGGGCGCCGGCCCAGCGCAGGTCCTGCCCTGCCTTGGCCCTCCGTGGCCTGCGCTGGGTGCGGGGTGCGGGCAGGACGCAGGAGGCCTCCCCGGGCTGGGCACAGGGAGAGTGGCAGGATGAAGGGCCCCAGGTGAGGGCGGGCGTCCCACCCTCGCAGCCGCCCAGGCCCGGCCGGAGCTGATGAGCGGGTGGCCCGTCCTGTGTCCACAGAGGGGGCAAGAATGAGCCCGAACCAGAGCAGCCCATTCCTCGCAAGGTGC
.........................................................................................................................((((((((.((((....))))...(((((......))))).....)))))))).(((((((((........)))))))))..............................................................................................................................................................................................
.....................................................................................................................118..................................................................................203..........................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR040008(GSM532893)
G727N. (cervix)		SRR040018(GSM532903)
G701N. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040016(GSM532901)
G645N. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040031(GSM532916)
G013T. (cervix)		SRR037931(GSM510469)
293GFP. (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM532884(GSM532884)
G871T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577579(Rovira)
total RNA. (breast)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
............................................................................................................................GGGGGAGGGCGCCGGGCGG........................................................................................................................................................................................................................................................ 192.000.001.00-----1.00----------------------------------------------------------
..........................................................................................................................................................................................GTGCGGGGTGCGGGCATCAG......................................................................................................................................................................................... 201.000.00------------------1.00----------------------------------------------
..............................................................................................................................................................................................................................................................................................AGCCGCCCAGGCCCGGCCGGAGCTT................................................................................ 251.000.00-----------------------------------------------------1.00-----------
......................................................................................................................................................................................................................................................................................................................................................GGGGGCAAGAATGAGAC................................ 171.000.00-------------------------------------------------------------1.00---
...........................................................................................................................GGGGGGAGGGCGCCGCGCG......................................................................................................................................................................................................................................................... 191.000.00-----------------------1.00-----------------------------------------
.............................................................................................................................................................................................................................................................................................................................CTCTGTGGACACAGGACGGGCCACCC................................................ 2611.001.00------------------------1.00----------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................TGCTCTGGTTCGGGC.................... 1511.001.00--------------------------------------1.00--------------------------
...........................................................................................................................GCCGGCGCCCTCCCCCC........................................................................................................................................................................................................................................................... 1711.001.00-1.00---------------------------------------------------------------
...............................................................................................................CTCCCCCCGCCTTTCCTAGC.................................................................................................................................................................................................................................................................... 2011.001.00-----1.00-----------------------------------------------------------
....................................................................................................................................................................................................................GGCCTCCCCGGGCTGGGCGGG.............................................................................................................................................................. 211.000.001.00----------------------------------------------------------------
....................................................................................................................................................................................................................TGCCCAGCCCGGGGAGGCC................................................................................................................................................................ 1911.001.00--------------1.00--------------------------------------------------
............................................................................................................................GGGGGAGGGCGCCGGGCG......................................................................................................................................................................................................................................................... 181.000.00---------1.00-------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................GCTCATTCTTGCCCCC................................. 1630.330.33---------------------------------------------------------------0.33-
..............................................................................................................................................................................................................................................................................................................................ACAGGACGGGCCACC.......................................................... 1540.250.25--------------0.25--------------------------------------------------