ID: uc009ybz.1_intron_1_0_chr11_597021_f
GENE: PHRF1(2)
chr11:596971-597444+


(3)
AGO2.ip 		(2)
BRAIN 		(8)
BREAST 		(12)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
HELA 		(1)
LIVER 		(3)
OTHER 		(15)
SKIN

Sense strand
CGAGTGGTTCTGCCCGGAATGTGCTGCGCCTGGTGTTGTCCTTGCCGCTGGTAAGGACACTGCTCCCGTCCCAAGGCGCACATGGGCCTTCTCACTGTCCACTCTGCGGTCCCCGGGGTTAGGTTTGGCTGCTGTGTGGGGAGGACATCTAGGGCTGTCTCATGGGGGTTAGGGTTGGCTGCGGTGTCGGGAGGACATCTAGGGCTGTCTCGGGCTCGTCTTCTCGGGGATGTGTGTGGGGTCCATTGGCTGGGGGGTTCCGGTCCTCAGTGTTAGGAGCACCAGGCTCCATGAGCAGCCCTGGGTCCTGTGCACAGGTCAGCCCGAGCCAGGGCTGCTACTTGGCCGGCAGCCACAGGGGGAGCCGTTGGGGGAGGCGTGTGGCCTGTGAGTGTGGCACATCAGCCCTGGTGGTTCTTCCCAGATGCGGGTCCCGTGAGTGAGGAGGAGGTCTCCCTGCTCTTGGCTGATGTG
.................................................................................................................................................................................................................................................((((.....)))).((((((((((..........(((((.....)))))...(((((((((((.(((((.((....)))))...)).)))))))))))....)))))).))))...((..((((((..((((..((.((((.((((...)).)).)))).))..))))..))))))..)).....................................................
................................................................................................................................................................................................................................................241....................................................................................................................................................................................424................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189786TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040013(GSM532898)
G648T. (cervix)		SRR037935(GSM510473)
293cand3. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.....................................................................................................................................................................................................................................................TTGGCTGGGGGGTTCTATT..................................................................................................................................................................................................................1916.000.0015.001.00-----------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCCTGGTGGTTCTTCCCAGT.................................................24111.003.00---1.00--1.00---2.00-----------1.00--1.00-----1.00-------1.001.00---1.001.00---
.....................................................................................................................................................................................CGGTGTCGGGAGGACATCTAGGGCT............................................................................................................................................................................................................................................................................2514.004.00--4.00----------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCCTGGTGGTTCTTCCCAG..................................................2313.003.00----1.00----2.00---------------------------------------
.....................................................................................................................................................................................................................................................TTGGCTGGGGGGTTCTATC..................................................................................................................................................................................................................192.000.002.00------------------------------------------------
................................GTGTTGTCCTTGCCGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002.00-------------1.00----------------------1.00------------
.GAGTGGTTCTGCCCGGAATGTGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002.00-------2.00-----------------------------------------
...........................................................................................................................................................................................................................CTTCTCGGGGATGTGTGTGGGGTCCATTGG.................................................................................................................................................................................................................................3012.002.00--------2.00----------------------------------------
....TGGTTCTGCCCGGAATGTGCTGCGCCTGGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................311.000.00-1.00-----------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCCTGGTGGTTCTTCCCA...................................................2211.001.00------------------1.00------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCCTGGTGGTTCTTCCC....................................................2111.001.00-----1.00-------------------------------------------
....................................................................................................................................................................................................................................................ATTGGCTGGGGGGTTTTC....................................................................................................................................................................................................................181.000.00-----------------------------------------1.00-------
................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCCCTGGTGGTTCTTCC.....................................................2111.001.00-----------------------------------1.00-------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGGTCCCGTGAGTGAGG.............................2111.001.00-------------------------------------------1.00-----
....................................................................................................................................................................................................................................................ATTGGCTGGGGGGTTTC.....................................................................................................................................................................................................................171.000.00------------------------------------------1.00------
...................................................................................................................................................................................................................................................................................................................................................................CAGGGGGAGCCGTTGGGGGA...................................................................................................2011.001.00--------------1.00----------------------------------
.....................................................................................................................................................................................................................................ATGTGTGTGGGGTCCATTGG.................................................................................................................................................................................................................................2011.001.00--------------------------------------1.00----------
..........................................................................................................................................................................................................................................................................................................................................AGGGCTGCTACTTGGCA...............................................................................................................................171.000.00------------------------1.00------------------------
...............................................................................................................................................................................................................................TCGGGGATGTGTGTGTGTG........................................................................................................................................................................................................................................191.000.00-1.00-----------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGTGAGTGAGGAGGA.........................1811.001.00-----1.00-------------------------------------------
.................................TGTTGTCCTTGCCGCTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00------------------------------1.00------------------
................................................................CCCGTCCCAAGGCGCGATG.......................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------1.00-------------------------------------
.....................................................................................................................................................................................CGGTGTCGGGAGGACATC...................................................................................................................................................................................................................................................................................1811.001.00----------------1.00--------------------------------
.....................................................................................................................................................................................................................................................TTGGCTGGGGGGTTCTTTT..................................................................................................................................................................................................................191.000.001.00------------------------------------------------
....................................................................................................................................................................................................................................................ATTGGCTGGGGGGTTTGTA...................................................................................................................................................................................................................191.000.00-----------------------1.00-------------------------
.................................................................................................................................................................................GCTGCGGTGTCGGGAGGACATCTAGGGCT............................................................................................................................................................................................................................................................................2911.001.00--1.00----------------------------------------------
..................................................................................................................................................................TGGGGGTTAGGGTTGGGCG.....................................................................................................................................................................................................................................................................................................191.000.00----------------------------------1.00--------------
......................................................................................................................................................................................GGTGTCGGGAGGACATCTAGGGCT............................................................................................................................................................................................................................................................................2411.001.00---1.00---------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................GCCGTTGGGGGAGGCGCCGG...........................................................................................201.000.00-----------------1.00-------------------------------
..................................................................................................................................................................TGGGGGTTAGGGTTGGTCT.....................................................................................................................................................................................................................................................................................................191.000.00-----------1.00-------------------------------------
........................................................................................................................................................................................TGTCGGGAGGACATCTAGGGCT............................................................................................................................................................................................................................................................................2211.001.00--1.00----------------------------------------------
.................................TGTTGTCCTTGCCGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00--------------------------1.00----------------------
................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCCCTGGTGGTTCTTCCCAAT.................................................2511.001.00------1.00------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCTCCCTGCTCTTGGTGTC....231.000.00-------------------1.00-----------------------------
................................................................................................................................................................................................................................................................................................................................................................................TGGGGGAGGCGTGTGAC.........................................................................................171.000.00---------------------1.00---------------------------
....................................................................................................................GGTTAGGTTTGGCTGCTGTGTGG...............................................................................................................................................................................................................................................................................................................................................2311.001.00-------1.00-----------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................CTGTGAGTGTGGCACATCAGC....................................................................2111.001.00----------------------------------------------1.00--
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAGGTCTCCCTGCTCTTGGCTGATGCG321.000.00-1.00-----------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCCCTGGTGGTTCTTCCCAGATGCG.............................................3011.001.00-------------------------------------1.00-----------
....................................................................................................................................................................................................ATCTAGGGCTGTCTCGGGC...................................................................................................................................................................................................................................................................1911.001.00-1.00-----------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGGTGGTTCTTATGT...................................................191.000.00---------------------------1.00---------------------
...................................................................................................................................................................................TGCGGTGTCGGGAGGGCTC....................................................................................................................................................................................................................................................................................191.000.00----1.00--------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................TGGGGGAGGCGTGTGGGTGG......................................................................................201.000.00--------------------------------1.00----------------
..........................................................................................................................................................................AGGGTTGGCTGCGGTGTCG.............................................................................................................................................................................................................................................................................................1911.001.00-----------------------------------------------1.00-
.................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCCTGGTGGTTCTTCCCAGA.................................................2411.001.00---------------1.00---------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCCCTGGTGGTTCTTCCCA...................................................2311.001.00---1.00---------------------------------------------
.....................................................................................................................................................................................................................................................TTGGCTGGGGGGTTCCATT..................................................................................................................................................................................................................191.000.001.00------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCTGGTGGTTCTTCCCA...................................................2011.001.00--------------------1.00----------------------------
..........................................................ACTGCTCCCGTCCCA.................................................................................................................................................................................................................................................................................................................................................................................................................1550.200.20------------------------------------------------0.20

Antisense strand
CGAGTGGTTCTGCCCGGAATGTGCTGCGCCTGGTGTTGTCCTTGCCGCTGGTAAGGACACTGCTCCCGTCCCAAGGCGCACATGGGCCTTCTCACTGTCCACTCTGCGGTCCCCGGGGTTAGGTTTGGCTGCTGTGTGGGGAGGACATCTAGGGCTGTCTCATGGGGGTTAGGGTTGGCTGCGGTGTCGGGAGGACATCTAGGGCTGTCTCGGGCTCGTCTTCTCGGGGATGTGTGTGGGGTCCATTGGCTGGGGGGTTCCGGTCCTCAGTGTTAGGAGCACCAGGCTCCATGAGCAGCCCTGGGTCCTGTGCACAGGTCAGCCCGAGCCAGGGCTGCTACTTGGCCGGCAGCCACAGGGGGAGCCGTTGGGGGAGGCGTGTGGCCTGTGAGTGTGGCACATCAGCCCTGGTGGTTCTTCCCAGATGCGGGTCCCGTGAGTGAGGAGGAGGTCTCCCTGCTCTTGGCTGATGTG
.................................................................................................................................................................................................................................................((((.....)))).((((((((((..........(((((.....)))))...(((((((((((.(((((.((....)))))...)).)))))))))))....)))))).))))...((..((((((..((((..((.((((.((((...)).)).)))).))..))))..))))))..)).....................................................
................................................................................................................................................................................................................................................241....................................................................................................................................................................................424................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189786TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040013(GSM532898)
G648T. (cervix)		SRR037935(GSM510473)
293cand3. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
..........................CGCCTGGTGTTGTCCTGACC............................................................................................................................................................................................................................................................................................................................................................................................................................................ 201.000.00-1.00-----------------------------------------------
..........................................................................................................................................................................................................................TCTTCTCGGGGATGTGTTG............................................................................................................................................................................................................................................. 191.000.00------1.00------------------------------------------
...GTGGTTCTGCCCGGACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 171.000.00----------------------------1.00--------------------
..................................................................................................CCACTCTGCGGTCCCCCGG..................................................................................................................................................................................................................................................................................................................................................................... 191.000.00----1.00--------------------------------------------
.....................................................................................................................................................................................................................CCCGAGAAGACGAGC...................................................................................................................................................................................................................................................... 1511.001.00-----1.00-------------------------------------------
...........................................................................................................................................................................................................................................................GGGGGGTTCCGGTCCCCGG............................................................................................................................................................................................................ 191.000.00------------1.00------------------------------------
..AGTGGTTCTGCCCGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 161.000.00---------------------------------1.00---------------
...................................................................................................................................................................................................................................GGATGTGTGTGGGGTAAA..................................................................................................................................................................................................................................... 181.000.00-----------------------------1.00-------------------