ID: uc009xue.2_intron_20_0_chr10_95111329_r
GENE: (14)
chr10:95111279-95111471-


(3)
BREAST 		(8)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(3)
HELA 		(2)
LIVER 		(8)
SKIN 		(1)
XRN.ip

Sense strand
TACAGAATCCACCCAAAGTTATCATGGAACTTTTTGACAATGACCAAGTGGTAGGTCGTTTAGAATTTCTAAGATAACTTGGGGATGATGGAGATTTGAAGGGATGATTGTCGGGGAATTTAAGGATCACTTTGTTTCTCTAGGGCAAAGATGAATTTTTAGGACGAAGCATTTTCTCTCCTGTGGTGAAACT
...................................................((((((.((((..((..(((((....)))))..))..))))))))))...............................................................................................
..................................................51...............................................100...........................................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR038854(GSM458537)
MM653. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
..................................................GTAGGTCGTTTAGAATTTCTAAGATAACTTGGGGATGATGGAGATTTGAAGGGATGATTGTCGGGGAATTTAAGGATCACTTTGTTTCTCTAG..................................................93144.0044.0017.0025.00-2.00-----------------------
..................................................GTAGGTCGTTTAGAATTTCTAAGATAACTTGGGGATGATGGAGATTTGAAGGGATGATTGTCGGGGAATTTAAGGATCACTTTGTTTCTCT....................................................9117.007.007.00--------------------------
..................................................GTAGGTCGTTTAGAATTTCTAAGATAACTTGGGGATGATGGAGATTTGAAGGGATGATTGTCGGGGAATTTAAGGATCACTTTGTTTCTCTAGA.................................................9416.0044.00-6.00-------------------------
..................................................GTAGGTCGTTTAGAATTTCTAAGATAACTTGGGGATGATGGAGATTTGAAGGGATGATTGTCGGGGAATTTAAGGATCACTTTGTTTCTCTA...................................................9215.005.005.00--------------------------
..................................................GTAGGTCGTTTAGAATTTCTAAGATAACTTGGGGATGATGGAGATTTGAAGGGATGATTGTCGGGGAATTTAAGGATCACTTTGTTTCTCTAGT.................................................9414.0044.004.00--------------------------
.........................................................................................................................................................AATTTTTAGGACGAAGC.......................1713.003.00--3.00------------------------
...................................................TAGGTCGTTTAGAATTTCTAAGATAACTTGGGGATGATGGAGATTTGAAGGGATGATTGTCGGGGAATTTAAGGATCACTTTGTTTCTCTAGT.................................................933.000.003.00--------------------------
.................................................................................................................................................CAAAGATGAATTTTTAGGA.............................1911.001.00-----------------------1.00---
...................................GACAATGACCAAGTGGGCAA..........................................................................................................................................201.000.00----------------------1.00----
.........................................................................................................................................................AATTTTTAGGACGAAGCATTTTCTCT..............2611.001.00------------1.00--------------
.............................................................................CTTGGGGATGATGGAAAGG.................................................................................................191.000.00---------1.00-----------------
................................................................................................................................................GCAAAGATGAATTTTTAGGACG...........................2211.001.00--------1.00------------------
................AGTTATCATGGAACTTTTTGACAATGACCAAGTGGTAGGTCGTTTAGAATTTCTAAGATAACTTGGGGATGATGGAGATTTGAAGGGATGATTGTCGG...............................................................................9811.001.00-1.00-------------------------
.............................................................................................ATTTGAAGGGATGATTGTCGGGGAATT.........................................................................2711.001.00----1.00----------------------
............................................................................................................................................................................TTTCTCTCCTGTGGTGAAAC.2011.001.00-------------------1.00-------
..................................................GTAGGTCGTTTAGAATTTCTAAGA.......................................................................................................................2411.001.00-----1.00---------------------
............................................................................................................................................................TTTTAGGACGAAGCATTTT..................1911.001.00--1.00------------------------
................................................................................................................................................................AGGACGAAGCATTTTCAAA..............191.000.00----------1.00----------------
.ACAGAATCCACCCAAAGTT.............................................................................................................................................................................1911.001.00------1.00--------------------
................................TTTGACAATGACCAAGTG...............................................................................................................................................1811.001.00------------------------1.00--
.....................................................................................................................................................GATGAATTTTTAGGACGAAGCATTTTC.................2711.001.00-------------------------1.00-
..................TTATCATGGAACTTTTTGACAATGAC.....................................................................................................................................................2611.001.00---------------1.00-----------
....................................................................................................................................................AGATGAATTTTTAGGACGCAG........................211.000.00------------------1.00--------
..............................................................................................................................................GGGCAAAGATGAATTTTTAGGACG...........................2411.001.00-----------------1.00---------
...........................................................................................................................................................................TTTTCTCTCCTGTGGTGAAAC.2111.001.00---------------------1.00-----
...............................................................................................TTGAAGGGATGATTGTATGT..............................................................................201.000.00-----------1.00---------------
..................................................GTAGGTCGTTTAGAATTTCTAAGATAACTTGGGGATGATGGAGATTTGAAGGGATGATTGT..................................................................................6111.001.00---1.00-----------------------
......ATCCACCCAAAGTTATCATGGAACTTT................................................................................................................................................................2711.001.00----------------1.00----------
.....................................................................................................GGATGATTGTCGGGG.............................................................................1511.001.00----1.00----------------------
......................................................................................................................TTTAAGGATCACTTTGTTTCTCTAG..................................................2511.001.00-------1.00-------------------
..................................................................................................................................................AAAGATGAATTTTTAGGACGAA.........................2211.001.00-------------1.00-------------
.............................................................................CTTGGGGATGATGGAAAGT.................................................................................................191.000.00--------------1.00------------
...................................................................................................................................................AAGATGAATTTTTAGGACGAAGC.......................2311.001.00--------------------1.00------
...................................................................................................................................................AAGATGAATTTTTAGG..............................1640.250.25--------------------------0.25

Antisense strand
TACAGAATCCACCCAAAGTTATCATGGAACTTTTTGACAATGACCAAGTGGTAGGTCGTTTAGAATTTCTAAGATAACTTGGGGATGATGGAGATTTGAAGGGATGATTGTCGGGGAATTTAAGGATCACTTTGTTTCTCTAGGGCAAAGATGAATTTTTAGGACGAAGCATTTTCTCTCCTGTGGTGAAACT
...................................................((((((.((((..((..(((((....)))))..))..))))))))))...............................................................................................
..................................................51...............................................100...........................................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR038854(GSM458537)
MM653. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)