ID: uc009xom.2_intron_7_0_chr10_51247017_r.3p
GENE: (2)
chr10:51246967-51247216-


(1)
AGO2.ip
(1)
B-CELL
(2)
BRAIN
(6)
BREAST
(7)
CELL-LINE
(1)
HEART
(1)
OTHER
(10)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
ACAAAAATGACCACTCGTTGGAAGACAGGAGAGGAGTGTTTAGTTACAAAAGCAGTCAACAATTCAGGTGTATCTATATTTAGTCAGCAAATAAAAGTTGTTCAACTTGGTTGCTAATGGGACCCACTCTACTGAGGCTTTGTATAGAACTCATAGAGGAAGATGGCTTCAAGTAATGAACTACCCTTTGCTTTTCTTAGGACTAAAATCTCAGGAAGCTGGTGATGAATGAAAACCTTAGTCCCAATGG
................................................................................................................................................(((..((...((((((((.(((.((((.....)))))))..)))).))))....))..))).............................................
...........................................................................................................................................140...............................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR029128(GSM416757)
H520. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
TAX577590(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................TAGAACTCATAGAGGAAGATGGCTTC................................................................................26723.2923.2923.29------------------------------
..............................................................................................................................................TATAGAACTCATAGAGGAAGATGGCT..................................................................................2673.433.433.43------------------------------
..............................................................................................................................................TATAGAACTCATAGAGGAAGATGGCTTC................................................................................2873.433.433.43------------------------------
...........................................................................................................................................TTGTATAGAACTCATAGAGGAAGATGGC...................................................................................2872.572.572.57------------------------------
...............................................................................................................................................ATAGAACTCATAGAGGAAGATGGCTTC................................................................................2772.142.142.14------------------------------
........................................TAGTTACAAAAGCAGCTCC...............................................................................................................................................................................................192.000.00---------------1.001.00--------------
.....................AAGACAGGAGAGGAGTGTTTAGTCAC...........................................................................................................................................................................................................262.000.00-2.00-----------------------------
................................................................................................................................................TAGAACTCATAGAGGAAGATGGCTT.................................................................................2571.861.861.86------------------------------
............................................................................................................................................TGTATAGAACTCATAGAGGAAGATGGC...................................................................................2771.711.711.71------------------------------
..........................................................................................................................................TTTGTATAGAACTCATAGAGGAAGATGGC...................................................................................2971.571.571.43------------------------0.14-----
................................................................................................................................................TAGAACTCATAGAGGAAGATGGCTTCAA..............................................................................2871.431.431.43------------------------------
..............................................................................................................................................TATAGAACTCATAGAGGAAGATGGC...................................................................................2571.431.431.43------------------------------
................................................................................................................................................TAGAACTCATAGAGGAAGATGGCTTCAAG.............................................................................2971.431.431.43------------------------------
..............................................................................................................................................TATAGAACTCATAGAGGAAGATGGCTT.................................................................................2771.431.431.43------------------------------
...................................................................................................................................................................................ACTACCCTTTGCTTTTCTTGTCT................................................231.000.00-----1.00-------------------------
..................TGGAAGACAGGAGAGGAGTGTTC.................................................................................................................................................................................................................231.000.00-1.00-----------------------------
..............................................................................................................................................TATAGAACTCATAGAGGAAGATCGCT..................................................................................261.000.001.00------------------------------
...........................................................................................................................................TTGTATAGAACTCATAGAGGAAGATG.....................................................................................2671.001.001.00------------------------------
.........................................................................................................................................................TAGAGGAAGATGGCTAGG...............................................................................181.000.00-------1.00-----------------------
....................................................................................................................ATGGGACCCACTCTACTGAGGCTTCGTG..........................................................................................................281.000.00----1.00--------------------------
...........................GGAGAGGAGTGTTTAGTTACTCTG.......................................................................................................................................................................................................241.000.00--------1.00----------------------
........................ACAGGAGAGGAGTGTTTAGTCAC...........................................................................................................................................................................................................231.000.00-1.00-----------------------------
............................GAGAGGAGTGTTTAGCTCC...........................................................................................................................................................................................................191.000.00----------1.00--------------------
...................................................................................................................................CTGAGGCTTTGTATAGAACTCTG................................................................................................231.000.00------------1.00------------------
....................................................................................................................ATGGGACCCACTCTACTGAGGCTTCGTA..........................................................................................................281.000.00-1.00-----------------------------
.........ACCACTCGTTGGAAGACAGGAGAGGAGCGT...................................................................................................................................................................................................................301.000.00-1.00-----------------------------
......................................................................................................................................................................................ACCCTTTGCTTTTCTTTT..................................................181.000.00--------------1.00----------------
.....................................................................................................................................................................................................TAGGACTAAAATCTCAGGAAGGGT.............................241.000.001.00------------------------------
.......TGACCACTCGTTGGAAGACACAGA...........................................................................................................................................................................................................................241.000.001.00------------------------------
..................TGGAAGACAGGAGAGGAGTGTCTAG...............................................................................................................................................................................................................251.000.00-1.00-----------------------------
.............................................................................................................................................GTATAGAACTCATAGAGGAAGCAA.....................................................................................241.000.00-----------1.00-------------------
.........................................................................................................CTTGGTTGCTAATGGCC................................................................................................................................171.000.00-----------------1.00-------------
..................TGGAAGACAGGAGAGGAGTGTTAG................................................................................................................................................................................................................241.000.00-1.00-----------------------------
..................TGGAAGACAGGAGAGGAGTGCCT.................................................................................................................................................................................................................231.000.00-1.00-----------------------------
.................TTGGAAGACAGGAGAGGAGTGTTCAG...............................................................................................................................................................................................................261.000.00-----1.00-------------------------
......................................................................................................CAACTTGGTTGCTAATGTGA................................................................................................................................201.000.00-------------1.00-----------------
......................................................................................................................................AGGCTTTGTATAGAACTCAG................................................................................................201.000.00---------1.00---------------------
.................................................................................................................................................AGAACTCATAGAGGAAGATGGCTTC................................................................................2570.860.860.86------------------------------
................................................................................................................................................TAGAACTCATAGAGGAAGATGG....................................................................................2270.710.710.71------------------------------
...........................................................................................................................................TTGTATAGAACTCATAGAGGAAGATGG....................................................................................2770.570.570.57------------------------------
..........................................................................................................................................TTTGTATAGAACTCATAGAGGAAGATG.....................................................................................2770.570.570.57------------------------------
........................................................CAACAATTCAGGTGTATCTATATTTAGTCAGCA.................................................................................................................................................................3320.500.50------------------0.50------------
.............................................................................................................................................................................TAATGAACTACCCTTTGC...........................................................1820.500.50-------------------0.50-----------
................................................................................................................................................TAGAACTCATAGAGGAAGATGGCTTCAAGT............................................................................3040.500.500.50------------------------------
............................................................................................................................................TGTATAGAACTCATAGAGGAAGATGGCT..................................................................................2870.430.430.43------------------------------
................................................................................................................................................TAGAACTCATAGAGGAAGATGGCTTCA...............................................................................2770.430.430.43------------------------------
................................................................................................................................................TAGAACTCATAGAGGAAGA.......................................................................................1970.430.430.43------------------------------
........................................................................................................................................GCTTTGTATAGAACTCATAGAGGAAGATGG....................................................................................3050.400.40--------------------0.40----------
...............................................................................................................................................................................ATGAACTACCCTTTGCTTTTCT.....................................................2230.330.33---------------------0.33---------
..............................................................................................................................................TATAGAACTCATAGAGGAAGATGGCTTCAAG.............................................................................3170.290.29----------------------0.29--------
...........................................................................................................................................TTGTATAGAACTCATAGAGGAAGATGGCT..................................................................................2970.290.290.29------------------------------
................................................................................................................................................TAGAACTCATAGAGGAAGATGGC...................................................................................2370.290.290.29------------------------------
..............................................................................................................................................TATAGAACTCATAGAGGAAGATGGCTTCA...............................................................................2970.290.290.29------------------------------
............................................................................................................................................TGTATAGAACTCATAGAGGAAGATGGCTTC................................................................................3070.290.290.29------------------------------
.............................................................................................................................................GTATAGAACTCATAGAGGAAGATGGC...................................................................................2670.290.290.14-----------------------0.14------
.........................................................................................................................ACCCACTCTACTGAGGCTTTGTA..........................................................................................................2380.250.25------0.25------------------------
........................................................................................................................................GCTTTGTATAGAACTCATAGAGGAAGATGGC...................................................................................3150.200.200.20------------------------------
.................................................................................................................................................AGAACTCATAGAGGAAGATGGCTTCA...............................................................................2670.140.140.14------------------------------
...............................................................................................................................................ATAGAACTCATAGAGGAAGATGGCT..................................................................................2570.140.140.14------------------------------
...............................................................................................................................................ATAGAACTCATAGAGGAAGATG.....................................................................................2270.140.14---------------------------0.14---
.....................................................................................................................TGGGACCCACTCTACTGAGGCTTTGTATAG.......................................................................................................3070.140.14-----------------------0.14-------
..............................................................................................................................................TATAGAACTCATAGAGGAAGATGG....................................................................................2470.140.140.14------------------------------
..............................................................................................................................................TATAGAACTCATAGAGGAAGATG.....................................................................................2370.140.140.14------------------------------
.............................................................................................................................................GTATAGAACTCATAGAGGAAGATG.....................................................................................2470.140.14-----------------------------0.14-
.............................................................................................................................................GTATAGAACTCATAGAGGAAGATGGCTTCA...............................................................................3070.140.14-------0.14-----------------------
......................................................................................................................GGGACCCACTCTACTGAGGCTTTGTATA........................................................................................................2870.140.14--------------------------0.14----
............................................................................................................................................TGTATAGAACTCATAGAGGAAGATGG....................................................................................2670.140.140.14------------------------------
................................................................................................................................................TAGAACTCATAGAGGAAGAT......................................................................................2070.140.140.14------------------------------
...........................................................................................................................................TTGTATAGAACTCATAGAGGAAGATGGCTTC................................................................................3170.140.140.14------------------------------
................................................................................................................................................TAGAACTCATAGAGGAAGATGGGTTC................................................................................2670.140.710.14------------------------------
...............................................................................................................................................ATAGAACTCATAGAGGAAGATGGCTTCAA..............................................................................2970.140.14------0.14------------------------
..............................................................................................................................................TATAGAACTCATAGAGGAAGATGGCTG.................................................................................2770.143.430.14------------------------------
................................................................................................................................................TAGAACTCATAGAGGAAGATGGCT..................................................................................2470.140.140.14------------------------------
...........................................................................................................................................TTGTATAGAACTCATAGAGGAAGATGGCTT.................................................................................3070.140.140.14------------------------------
..........................................................................................................................................TTTGTATAGAACTCATAGAGGAAGATGGCTTCAA..............................................................................3470.140.14----------------------------0.14--
...............................................................................................................................................ATAGAACTCATAGAGGAAGATGGCTTCA...............................................................................2870.140.140.14------------------------------
................................................................................................................................................TAGAACTCATAGAGGAAGATGGTTTC................................................................................2670.140.710.14------------------------------
.......................................................................................................................................GGCTTTGTATAGAACTCATAGAGGAAG........................................................................................2780.120.120.12------------------------------
....................................................................................................................................TGAGGCTTTGTATAGAACTCATAGAGGAA.........................................................................................2990.110.110.11------------------------------
................................................................................................................................CTACTGAGGCTTTGTATAGAACTCATA...............................................................................................2790.110.110.11------------------------------
....................................................................................................................................TGAGGCTTTGTATAGAACTCA.................................................................................................2190.110.11------0.11------------------------
.......................................................................................................................................GGCTTTGTATAGAACTCATAGAGG...........................................................................................2490.110.110.11------------------------------
....................................................................................................................................TGAGGCTTTGTATAGAACTCATAGAGG...........................................................................................2790.110.110.11------------------------------
....................................................................................................................................TGAGGCTTTGTATAGAACTC..................................................................................................2090.110.110.11------------------------------
......................................................................................................................................AGGCTTTGTATAGAAC....................................................................................................1690.110.11------------------------------0.11
......................................................................................................................................AGGCTTTGTATAGAACTCATA...............................................................................................2190.110.11--------0.11----------------------

Antisense strand
ACAAAAATGACCACTCGTTGGAAGACAGGAGAGGAGTGTTTAGTTACAAAAGCAGTCAACAATTCAGGTGTATCTATATTTAGTCAGCAAATAAAAGTTGTTCAACTTGGTTGCTAATGGGACCCACTCTACTGAGGCTTTGTATAGAACTCATAGAGGAAGATGGCTTCAAGTAATGAACTACCCTTTGCTTTTCTTAGGACTAAAATCTCAGGAAGCTGGTGATGAATGAAAACCTTAGTCCCAATGG
................................................................................................................................................(((..((...((((((((.(((.((((.....)))))))..)))).))))....))..))).............................................
...........................................................................................................................................140...............................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR029128(GSM416757)
H520. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
TAX577590(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................................................................................................................................................................TGAATGAAAACCTTACTAG...... 194.000.00--4.00----------------------------
.................................................................................................................................................AGAACTCATAGAGGATTG....................................................................................... 182.000.00---2.00---------------------------
......................................................................................................................................................................................................................GAAGCTGGTGATGAATAGAG................ 201.000.00----1.00--------------------------
..............................................................................................................................................................................................................AATCTCAGGAAGCTGGAG.......................... 181.000.00------1.00------------------------