ID: uc009xod.2_intron_6_0_chr10_50681075_r
GENE: (4)
chr10:50681025-50681572-


(1)
B-CELL
(4)
BRAIN
(5)
BREAST
(9)
CELL-LINE
(4)
CERVIX
(1)
HEART
(3)
LIVER
(5)
OTHER
(6)
SKIN
(1)
XRN.ip

Sense strand
GTACCACTACAATAGCTTCAAGACAGCCACTGATTACGAGATACAATGAGGTAACATGTGAATGTAACAGGGAAGTTGAGTGGTGCTGCTGTACGTGGAGGGAAAGGACTAAGCGTATCCACACCCTTACCCACCAAAGCAGCATTGACATCTGGGCTTGGGAGGGGGCCTAAGGGGAGACTTGTTGTTTTTAACTCTATGCCCTACTTCTGGATATTTGGGGGCGGGGATTGTGGGCATGTGTATGTTCAAACAAAGAATGCGTTTTCTACAGCATGTATTTTCCTCCTAAAAACCCAATTTTTAAATATTTCTATTAAATATTAAAAGTAAAAGCTGTGAAATGAGATTTTGATTCACCAGAGGTCTCTAGGACATTACCATTCCTTATATTGGGAACAGCCCAGTAATTCCATGTGTACAATATGTGGAGGCAGAGGCTGAGAACTGTAACTGGTCTTAAGTGTGTGTGCTCAGTGTTGTGTGTCTTACCTCTAGGACACATCCATATTTGTGTTTCTTCTGACCACGCGGGTGGGCGGCTTAGG
..................................................((.((((....)))).))...........(((((((((((.....(((.(((.((((.................)))).))).))).))))))))).))...............................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150............................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR189783SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR040034(GSM532919)
G001N. (cervix)
SRR189784GSM532877(GSM532877)
G691N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
GSM532886(GSM532886)
G850T. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTATAG......................................................................................................................................................................................................................................................................................................................2012.000.0010.00-1.00--1.00--------------------------------
................................ATTACGAGATACAATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1816.006.00-6.00------------------------------------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTACAG......................................................................................................................................................................................................................................................................................................................205.000.005.00-------------------------------------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTAGAG......................................................................................................................................................................................................................................................................................................................204.000.004.00-------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTGTGTCTTACCTCTAGT.................................................232.000.00----2.00---------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAGGCAGAGGCTGACGA.....................................................................................................212.000.00------2.00-------------------------------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTTCTG......................................................................................................................................................................................................................................................................................................................201.000.001.00-------------------------------------
............................................................................................................................................................................AGGGGAGACTTGTTGGCGA.....................................................................................................................................................................................................................................................................................................................................................................191.000.00------------1.00-------------------------
........................................................................................................................................................................................................................................................................................TTTTCCTCCTAAAAAAATG.........................................................................................................................................................................................................................................................191.000.00-----------------1.00--------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCTTCTGACCACGCGGGTGGGCGGC.....2911.001.00---------------------------------1.00----
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGGA.........................................................................................................................................................................................................................................................................................................................171.000.00----------------------------------1.00---
.....................................................................................................................................................................................................................................................................................................................................AAAAGTAAAAGCTGTCGCT............................................................................................................................................................................................................191.000.00--------------1.00-----------------------
......................................................................................................................................................................................................................................................................................................................................................................................ACATTACCATTCCTTTGC............................................................................................................................................................181.000.00-------1.00------------------------------
................................................................................................................................................................................................................................................................................................................................................................TGATTCACCAGAGGTCTCTAGGACATGACC......................................................................................................................................................................301.000.00------------------1.00-------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTGTACAATATGTGGAGGCAGAGGCTG.........................................................................................................3111.001.00-------------1.00------------------------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTGGAG......................................................................................................................................................................................................................................................................................................................201.000.001.00-------------------------------------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTGTAGT.....................................................................................................................................................................................................................................................................................................................211.000.00----------1.00---------------------------
.....................................................................................................................................................................................................................................................................................................................................AAAAGTAAAAGCTGTCAGT............................................................................................................................................................................................................191.000.00----------------------1.00---------------
.................................................................................................................................................................................AGACTTGTTGTTTTTAAC.................................................................................................................................................................................................................................................................................................................................................................1811.001.00----------------------------1.00---------
...............................................................................................................................TACCCACCAAAGCAGGTC...................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------1.00----------------
...............................................................................................................................................................................................................................................................AAGAATGCGTTTTCTGTA...................................................................................................................................................................................................................................................................................181.000.00-------------------------------1.00------
..................................................................................................................................................................................................................................GGGATTGTGGGCATGTGTATTT............................................................................................................................................................................................................................................................................................................221.000.00--------------------------1.00-----------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTATGG......................................................................................................................................................................................................................................................................................................................201.000.001.00-------------------------------------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTTAAG......................................................................................................................................................................................................................................................................................................................201.000.001.00-------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGCGGGTGGGCGCC.....171.000.00---------1.00----------------------------
.....................................GAGATACAATGAGGTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00---1.00----------------------------------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTGCTG......................................................................................................................................................................................................................................................................................................................201.000.001.00-------------------------------------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTCTAG......................................................................................................................................................................................................................................................................................................................201.000.001.00-------------------------------------
.....................................................................................................................................................ATCTGGGCTTGGGAGGCTGA...........................................................................................................................................................................................................................................................................................................................................................................................201.000.00------------------------------1.00-------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTAGA.......................................................................................................................................................................................................................................................................................................................191.000.001.00-------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGTTTCTTCTGACCACG.................2111.001.00----------------1.00---------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTTGTGTTTCTCGCT.......................191.000.00-----------------------------1.00--------
.....................................................................................................................................................................................................................................................................................................................................AAAAGTAAAAGCTGTCGGG............................................................................................................................................................................................................191.000.00-------------------------1.00------------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTTTTT......................................................................................................................................................................................................................................................................................................................201.000.00------------------------------------1.00-
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTGCAG......................................................................................................................................................................................................................................................................................................................201.000.001.00-------------------------------------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTGTAG......................................................................................................................................................................................................................................................................................................................201.000.001.00-------------------------------------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGACT........................................................................................................................................................................................................................................................................................................................181.000.00--1.00-----------------------------------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTACTG......................................................................................................................................................................................................................................................................................................................201.000.001.00-------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGGCTGAGAACCCG.................................................................................................181.000.00-------------------1.00------------------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTGGTGTT....................................................................................................................................................................................................................................................................................................................221.000.00------------------------1.00-------------
......................ACAGCCACTGATTACGAGATACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00--------------------1.00-----------------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTTCAG......................................................................................................................................................................................................................................................................................................................201.000.001.00-------------------------------------
..........................................................................................................................................................................................................................TGGGGGCGGGGATTGTATA.......................................................................................................................................................................................................................................................................................................................191.000.001.00-------------------------------------
.............................................................................................................................................GCATTGACATCTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................1620.500.50-------------------------------------0.50

Antisense strand
GTACCACTACAATAGCTTCAAGACAGCCACTGATTACGAGATACAATGAGGTAACATGTGAATGTAACAGGGAAGTTGAGTGGTGCTGCTGTACGTGGAGGGAAAGGACTAAGCGTATCCACACCCTTACCCACCAAAGCAGCATTGACATCTGGGCTTGGGAGGGGGCCTAAGGGGAGACTTGTTGTTTTTAACTCTATGCCCTACTTCTGGATATTTGGGGGCGGGGATTGTGGGCATGTGTATGTTCAAACAAAGAATGCGTTTTCTACAGCATGTATTTTCCTCCTAAAAACCCAATTTTTAAATATTTCTATTAAATATTAAAAGTAAAAGCTGTGAAATGAGATTTTGATTCACCAGAGGTCTCTAGGACATTACCATTCCTTATATTGGGAACAGCCCAGTAATTCCATGTGTACAATATGTGGAGGCAGAGGCTGAGAACTGTAACTGGTCTTAAGTGTGTGTGCTCAGTGTTGTGTGTCTTACCTCTAGGACACATCCATATTTGTGTTTCTTCTGACCACGCGGGTGGGCGGCTTAGG
..................................................((.((((....)))).))...........(((((((((((.....(((.(((.((((.................)))).))).))).))))))))).))...............................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150............................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR189783SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR040034(GSM532919)
G001N. (cervix)
SRR189784GSM532877(GSM532877)
G691N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
GSM532886(GSM532886)
G850T. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
....................................................................................................................GTGGGTAAGGGTGTGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................. 1811.001.00-----------------------1.00--------------
.........................................................................AGTTGAGTGGTGCTGATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00--------1.00-----------------------------
....................................................................................................................................................................................................................................................................................................................................TAAAAGTAAAAGCTGTGA.............................................................................................................................................................................................................. 181.000.00-----------------------------------1.00--
.............................................................................................................................................CCAAGCCCAGATGTCAATGC................................................................................................................................................................................................................................................................................................................................................................................................... 2011.001.00---1.00----------------------------------
..............................................................................................................................................................................................................................................................................................................................AAATATTAAAAGTAAAAGTTTT................................................................................................................................................................................................................ 221.000.00---------------------------1.00----------
..........................................ACATTCACATGTTACCTCATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2311.001.00-----------1.00--------------------------
..........................................TCCCTGTTACATTCACATGTTACCTCATTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 3111.001.00--------------------------------1.00-----
............................................................................................................................................................CTTGGGAGGGGGCCTTTG...................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-----1.00--------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGCGGGTGGGCGGGAA... 191.000.00---------------1.00----------------------