| (1) AGO1.ip | (1) AGO2.ip | (2) B-CELL | (1) BRAIN | (2) BREAST | (17) CELL-LINE | (1) HEART | (2) HELA | (5) OTHER | (4) SKIN | (1) UTERUS | (1) XRN.ip |
| AATGTGTTAATTAAAACTTTATTTTTCAGATTTTGGAATCTCTTTTTAAGGTACGTTCAATATATTACAGCTTAAGCCTACTAAAACTTAACACAGAAATACATGCCAATGAAGAAGAGGTTTCTAAATTTTAAGGGAGTAGAAGGAATTCCATACTTGCTGCTCTATATATTTAAGAATTTTATGTTCATTTGTATAGTGCATTAGCCCCATTCTGAATCCCAAGTGATGTTTCGGTCAGGGCTGATATTTGATGGATGAAGATTCAGAGACACAGACACACATTTATATAGATATTTATTTCATCAGTGCAATTTAAGTAGTCACTATTTCTTTTTTTGTCCCTCTTTTGTTTTCTTAAAGTGGTTTCAGTGGCAGGTCAATCAGATGGAAGAAGTAAGTCTAACGTTTTA ....................................................................................................................................................................................................................................................................................................((((...........((((..(((.....)))))))...........))))...................................................................... .......................................................................................................................................................................................................................................................................................280.................................................................348............................................................... | Size | Perfect hit | Total Norm | Perfect Norm | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR033719(GSM497064) 6hr Activated B cell line (ABC158). (B cell) | SRR033720(GSM497065) EBV activated B cell line (EBV159). (B cell) | SRR207116(GSM721078) Nuclear RNA. (cell line) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR189782 | TAX577740(Rovira) total RNA. (breast) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR189785 | RoviraIPAgo2(Rovira) total RNA. (ago2 breast) | SRR330873(SRX091711) tissue: skin psoriatic involveddisease state:. (skin) | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR094131(GSM651907) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | GSM416733(GSM416733) HEK293. (cell line) | GSM956925PAZD5 | SRR037931(GSM510469) 293GFP. (cell line) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR038860(GSM458543) MM426. (cell line) | SRR330870(SRX091708) tissue: skin psoriatic involveddisease state:. (skin) | GSM450599(GSM450599) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR038862(GSM458545) MM472. (cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | DRR000560(DRX000318) Isolation of RNA following immunoprecipitatio. (ago1 cell line) | GSM359203(GSM359203) hepg2_untreated_b. (cell line) | SRR343337 | SRR029125(GSM416754) U2OS. (cell line) | SRR189784 | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................................................................CCAAGTGATGTTTCGGTCAGGGCTGATA.................................................................................................................................................................... | 28 | 1 | 31.00 | 31.00 | 13.00 | 4.00 | - | - | 3.00 | 1.00 | 1.00 | 1.00 | 2.00 | - | - | 2.00 | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - |
| ............................................................................................................................................................................................................................CCCAAGTGATGTTTCGGTCAGGGCTGATA.................................................................................................................................................................... | 29 | 1 | 6.00 | 6.00 | 3.00 | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................GATGGAAGAAGTAAGTCTAACG..... | 22 | 1 | 6.00 | 6.00 | - | - | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................TTGGAATCTCTTTTTAAG........................................................................................................................................................................................................................................................................................................................................................................... | 18 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................CCCAAGTGATGTTTCGGTCAGGGCTGATACTT................................................................................................................................................................. | 32 | 1 | 2.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................CACTATTTCTTTTTTTCTAG..................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................................................TTTATATAGATATTTAACCT............................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...GTGTTAATTAAAACTTTATTTTTCAGATTTTGGA........................................................................................................................................................................................................................................................................................................................................................................................ | 34 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................TGGAATCTCTTTTTAAG........................................................................................................................................................................................................................................................................................................................................................................... | 17 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................CATTCTGAATCCCAAGTGATGTT.................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................GTGATGTTTCGGTCAGGGCTGAT..................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................ATTTATATAGATATTTTAAG.............................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................TAAGGGAGTAGAAGGAAAAA...................................................................................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................GATGGATGAAGATTCAGAGACACAGACAC.................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................GGATGAAGATTCAGATGG............................................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................TAAATTTTAAGGGAGTTCCG............................................................................................................................................................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................................................................ACACATTTATATAGAGGA.................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................GATGGATGAAGATTCAGAGACACAGACA..................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................CCAAGTGATGTTTCGGTCAGGGCTGCTA.................................................................................................................................................................... | 28 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................TTGGAATCTCTTTTTA............................................................................................................................................................................................................................................................................................................................................................................. | 16 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 |
| ....................................................................................................................................................................................................................................................................................................................................CACTATTTCTTTTTTTG........................................................................ | 17 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - |
| AATGTGTTAATTAAAACTTTATTTTTCAGATTTTGGAATCTCTTTTTAAGGTACGTTCAATATATTACAGCTTAAGCCTACTAAAACTTAACACAGAAATACATGCCAATGAAGAAGAGGTTTCTAAATTTTAAGGGAGTAGAAGGAATTCCATACTTGCTGCTCTATATATTTAAGAATTTTATGTTCATTTGTATAGTGCATTAGCCCCATTCTGAATCCCAAGTGATGTTTCGGTCAGGGCTGATATTTGATGGATGAAGATTCAGAGACACAGACACACATTTATATAGATATTTATTTCATCAGTGCAATTTAAGTAGTCACTATTTCTTTTTTTGTCCCTCTTTTGTTTTCTTAAAGTGGTTTCAGTGGCAGGTCAATCAGATGGAAGAAGTAAGTCTAACGTTTTA ....................................................................................................................................................................................................................................................................................................((((...........((((..(((.....)))))))...........))))...................................................................... .......................................................................................................................................................................................................................................................................................280.................................................................348............................................................... | Size | Perfect hit | Total Norm | Perfect Norm | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR033719(GSM497064) 6hr Activated B cell line (ABC158). (B cell) | SRR033720(GSM497065) EBV activated B cell line (EBV159). (B cell) | SRR207116(GSM721078) Nuclear RNA. (cell line) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR189782 | TAX577740(Rovira) total RNA. (breast) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR189785 | RoviraIPAgo2(Rovira) total RNA. (ago2 breast) | SRR330873(SRX091711) tissue: skin psoriatic involveddisease state:. (skin) | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR094131(GSM651907) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | GSM416733(GSM416733) HEK293. (cell line) | GSM956925PAZD5 | SRR037931(GSM510469) 293GFP. (cell line) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR038860(GSM458543) MM426. (cell line) | SRR330870(SRX091708) tissue: skin psoriatic involveddisease state:. (skin) | GSM450599(GSM450599) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR038862(GSM458545) MM472. (cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | DRR000560(DRX000318) Isolation of RNA following immunoprecipitatio. (ago1 cell line) | GSM359203(GSM359203) hepg2_untreated_b. (cell line) | SRR343337 | SRR029125(GSM416754) U2OS. (cell line) | SRR189784 | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................................................................................................................................................................................................................................................................TAAAGTGGTTTCAGTGCCT.................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| .....................................................................................................CATGCCAATGAAGAAGACCG.................................................................................................................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................................................................................................................ACTATTTCTTTTTTTGATCA.................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................................................................................................................................................................................CAGTGGCAGGTCAATGCTG......................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................GAGCAGCAAGTATGG........................................................................................................................................................................................................................................................ | 15 | 5 | 0.40 | 0.40 | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 | - | - |