ID: uc009xlu.1_intron_1_0_chr10_32740850_f.3p
GENE: (2)
chr10:32742072-32742321+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
BRAIN 		(7)
BREAST 		(18)
CELL-LINE 		(2)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(5)
OTHER 		(10)
SKIN 		(1)
XRN.ip

Sense strand
GTAGGGTTAAGGAATATTGCTTTCTCCTCATGATGACATGAAATTGGGTATGGGATGAAAAATTTAAGTTTATGGCACTGGAAGAAATAAGTCTTACTGGTAAAAAGGTCCTGGCATAATTGATTAAATATTATTTACATTTAATATAATTAATTTTAAACTATTAAAGTATCTAATTGGCTTTTATTTTTTTTTTACAGGTTGTTTCCACTTTGGAAGAAACCTATGGACATTGCGATCAGAATGGAGA
........................................................................((.....((((((((((((((.....((((...............(((((((((..(((((........))))))))))))))..............)))).....))))..))))))))))...))...................................................
.................................................................66....................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189787SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189786SRR189782SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577579(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343337SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................TATGGCACTGGAAGAATTCA................................................................................................................................................................20163.000.0053.0024.0018.002.0014.0013.008.007.001.003.005.001.004.00---1.00-------1.00-1.001.00-1.00-------1.00-1.00-1.001.00-1.00--
......................................................................TATGGCACTGGAAGAATT..................................................................................................................................................................1850.000.0010.0011.0015.00-6.003.001.001.00-----1.00--------------1.00----1.00-------------
.......................................................................ATGGCACTGGAAGAATTCA................................................................................................................................................................1936.000.0013.003.005.00-4.001.003.001.00---3.00-2.00---------1.00-----------------------
......................................................................TATGGCACTGGAAGAATTC.................................................................................................................................................................1931.000.009.007.003.001.004.002.002.001.00---1.00----------1.00------------------------
......................................................................TATGGCACTGGAAGAAATCACT..............................................................................................................................................................22121.001.001.00--15.00----2.00-1.00---1.00--------------------1.00-----------
......................................................................TATGGCACTGGAAGAATTAA................................................................................................................................................................208.000.00--3.00-1.001.00-3.00---------------------------------------
.......................................................................ATGGCACTGGAAGAATTC.................................................................................................................................................................186.000.001.001.00--3.00---------1.00--------------------------------
......................................................................TATGGCACTGGAAGAAATCCCT..............................................................................................................................................................2214.001.00---4.00-------------------------------------------
.......................................................................ATGGCACTGGAAGAATTAA................................................................................................................................................................194.000.00-1.003.00--------------------------------------------
......................................................................TATGGCACTGGAAGAAGTCA................................................................................................................................................................204.000.001.00--1.001.001.00-----------------------------------------
......................................................................TATGGCACTGGAAGAAT...................................................................................................................................................................174.000.002.001.00----1.00----------------------------------------
......................................................................TATGGCACTGGAAGAAATCACC..............................................................................................................................................................2213.001.00---1.00----1.001.00-------------------------------------
......................................................................TATGGCACTGGAAGAAATCA................................................................................................................................................................2013.001.001.00----------1.00------------------1.00----------------
......................................................................TATGGCACTGGAAGAAATAACTG.............................................................................................................................................................233.000.00--------2.00-1.00------------------------------------
......................................................................TATGGCACTGGAAGAATGCA................................................................................................................................................................203.000.001.00-1.00-1.00------------------------------------------
......................................................................TATGGCACTGGAAGAATTTA................................................................................................................................................................203.000.001.002.00---------------------------------------------
......................................................................TATGGCACTGGAAGAAATACTTG.............................................................................................................................................................233.000.00---2.00----1.00--------------------------------------
......................................................................TATGGCACTGGAAGAAATCAC...............................................................................................................................................................2113.001.001.00--2.00-------------------------------------------
......................................................................TATGGCACTGGAAGAATTA.................................................................................................................................................................192.000.00-1.001.00--------------------------------------------
......................................................................TATGGCACTGGAAGAAATAACT..............................................................................................................................................................222.000.00----------------1.00----1.00-------------------------
......................................................................TATGGCACTGGAAGAAATAATT..............................................................................................................................................................222.000.00---1.00-----1.00-------------------------------------
.......................................................................ATGGCACTGGAAGAATTCC................................................................................................................................................................192.000.002.00----------------------------------------------
......................................................................TATGGCACTGGAAGAAATAACTT.............................................................................................................................................................232.000.00---1.00-----1.00-------------------------------------
......................................................................TATGGCACTGGAAGAAATACCTA.............................................................................................................................................................232.000.00--------2.00--------------------------------------
...............................................GTATGGGATGAAAAAAAA.........................................................................................................................................................................................182.000.00------------------2.00----------------------------
.....................................................................................................................................................................................TTTTATTTTTTTTTTACAAG.................................................201.000.00---------------1.00-------------------------------
......................................................................TATGGCACTGGAAGAAATACCGG.............................................................................................................................................................231.000.00--------1.00--------------------------------------
......................................................................TATGGCACTGGAAGAACTCA................................................................................................................................................................201.000.00---1.00-------------------------------------------
......................................................................TATGGCACTGGAAGAAATAATTA.............................................................................................................................................................231.000.00--------1.00--------------------------------------
......................................................................TATGGCACTGGAAGAATCCA................................................................................................................................................................201.000.001.00----------------------------------------------
......................................................................TATGGCACTGGAAGAAATACTTA.............................................................................................................................................................231.000.00---1.00-------------------------------------------
.....GTTAAGGAATATTGCTCAGT.................................................................................................................................................................................................................................201.000.00--------------------------------1.00--------------
.......................................................................ATGGCACTGGAAGAAATACTGA.............................................................................................................................................................221.000.00--------1.00--------------------------------------
......................................................................TATGGCACTGGAAGAAAT..................................................................................................................................................................1811.001.00--1.00--------------------------------------------
.......................................................................ATGGCACTGGAAGAAATCACT..............................................................................................................................................................211.000.00----1.00------------------------------------------
.......................................................................ATGGCACTGGAAGAAATAAACA.............................................................................................................................................................221.000.00---1.00-------------------------------------------
.....................................................................................................................................................................................TTTTATTTTTTTTTTACACAAG...............................................221.000.00-------------------------------------------1.00---
......................................................................TATGGCACTGGAAGAATTCT................................................................................................................................................................201.000.001.00----------------------------------------------
.......................................................................ATGGCACTGGAAGAATTTG................................................................................................................................................................191.000.00---------1.00-------------------------------------
...................................................................................................GTAAAAAGGTCCTGGGGG.....................................................................................................................................181.000.00---------1.00-------------------------------------
.......................................................................ATGGCACTGGAAGAAGGCA................................................................................................................................................................191.000.001.00----------------------------------------------
...............................................................................................................................................................................ATTGGCTTTTATTTTTTGTTA......................................................211.000.00---------------1.00-------------------------------
......................................................................TATGGCACTGGAAGACTTC.................................................................................................................................................................191.000.001.00----------------------------------------------
.......................................................................ATGGCACTGGAAGAATGCA................................................................................................................................................................191.000.00-------1.00---------------------------------------
...........................................................................................................................................................................................................................AAACCTATGGACATTGCGATCAGAA......2511.001.00-------------------------1.00---------------------
......................................................................TATGGCACTGGAAGAACTC.................................................................................................................................................................191.000.001.00----------------------------------------------
......................................................................TATGGCACTGGAAGAAATAACGA.............................................................................................................................................................231.000.00---1.00-------------------------------------------
...................................................................................................................................................................................................................TTTGGAAGAAACCTATGGACATTGCG.............2611.001.00----------------------------------------1.00------
.................................................................................................................................ATTATTTACATTTAATTTCT.....................................................................................................201.000.00----------------------------------------------1.00
................................................................................................................................................................................TTGGCTTTTATTTTTTTATT......................................................201.000.00-----------------1.00-----------------------------
......................................................................TATGGCACTGGAAGAATTT.................................................................................................................................................................191.000.001.00----------------------------------------------
......................................................................TATGGCACTGGAAGAAATAACTA.............................................................................................................................................................231.000.00---1.00-------------------------------------------
......................................................................TATGGCACTGGAAGAATTTG................................................................................................................................................................201.000.00---------1.00-------------------------------------
...................................................................................................GTAAAAAGGTCCTGGCAT.....................................................................................................................................1811.001.00----------------------------------1.00------------
......................................................................TATGGCACTGGAAGATTTC.................................................................................................................................................................191.000.001.00----------------------------------------------
.......................................................................ATGGCACTGGAAGAAATAACTGT............................................................................................................................................................231.000.00---------1.00-------------------------------------
......................................................................TATGGCACTGGAAGAAATAATGT.............................................................................................................................................................231.000.00---1.00-------------------------------------------
.......................................................................ATGGCACTGGAAGAAATAAGTT.............................................................................................................................................................221.000.00-----1.00-----------------------------------------
.......................................................................ATGGCACTGGAAGAATTTA................................................................................................................................................................191.000.00----1.00------------------------------------------
......................................................................TATGGCACTGGAAGAAATTAGT..............................................................................................................................................................2211.001.00---1.00-------------------------------------------
......................................................................TATGGCACTGGAAGAAATACCTT.............................................................................................................................................................231.000.00---1.00-------------------------------------------
......................................................................TATGGCACTGGAAGAAATACTGA.............................................................................................................................................................231.000.00---1.00-------------------------------------------
......................................................................TATGGCACTGGAAGAAATACTGT.............................................................................................................................................................231.000.00---1.00-------------------------------------------
......................................................................TATGGCACTGGAAGAAATCATT..............................................................................................................................................................2211.001.00---1.00-------------------------------------------
.......................................................................ATGGCACTGGAAGAAATAACCT.............................................................................................................................................................221.000.00---1.00-------------------------------------------
.......................................................................ATGGCACTGGAAGAATCCA................................................................................................................................................................191.000.001.00----------------------------------------------
...............................................................................................................................................................................ATTGGCTTTTATTTTTTTTTT......................................................2111.001.00-----------------1.00-----------------------------
......................................................................TATGGCACTGGAAGAATG..................................................................................................................................................................181.000.001.00----------------------------------------------
...............................................GTATGGGATGAAAAAAAAA........................................................................................................................................................................................191.000.00------1.00----------------------------------------
......................................................................TATGGCACTGGAAGAGTA..................................................................................................................................................................181.000.001.00----------------------------------------------
.....................................................................................................................................................TTAATTTTAAACTATTCTG..................................................................................191.000.00--------------1.00--------------------------------
.....GTTAAGGAATATTGCTAAG..................................................................................................................................................................................................................................191.000.00--------------------------------------1.00--------
......................................................................TATGGCACTGGAAGAGTT..................................................................................................................................................................181.000.001.00----------------------------------------------

Antisense strand
GTAGGGTTAAGGAATATTGCTTTCTCCTCATGATGACATGAAATTGGGTATGGGATGAAAAATTTAAGTTTATGGCACTGGAAGAAATAAGTCTTACTGGTAAAAAGGTCCTGGCATAATTGATTAAATATTATTTACATTTAATATAATTAATTTTAAACTATTAAAGTATCTAATTGGCTTTTATTTTTTTTTTACAGGTTGTTTCCACTTTGGAAGAAACCTATGGACATTGCGATCAGAATGGAGA
........................................................................((.....((((((((((((((.....((((...............(((((((((..(((((........))))))))))))))..............)))).....))))..))))))))))...))...................................................
.................................................................66....................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189787SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189786SRR189782SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577579(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343337SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................................................................................................................................................................................CATTGCGATCAGAATGGC.. 181.000.00--------------------1.00--------------------------
......................................................................................................................................................................................................................................CATTGCGATCAGAATGGGCA 201.000.00------------------------------------1.00----------
.........................................................................................AGTCTTACTGGTAAAGTGG.............................................................................................................................................. 191.000.00-------------------1.00---------------------------
.........................................................................................AGTCTTACTGGTAAAGTG............................................................................................................................................... 181.000.00-------------------1.00---------------------------
...............................................................................................................................................................................................TTTTTACAGGTTGTTTTG......................................... 181.000.00---------------------------------------------1.00-
......................................................................................................................................................................................................................................CATTGCGATCAGAATGGGAC 201.000.00-------------------------------1.00---------------
............................................................................................................................................................................................TTTTTTTTACAGGTTGG............................................. 171.000.00-------------1.00---------------------------------
............................................................................................................................................TTAATATAATTAATTTTCAGA......................................................................................... 211.000.00---------------1.00-------------------------------