ID: uc009xjx.2_intron_0_0_chr10_17794552_f.5p
GENE: (1)
chr10:17794502-17794751+


(1)
AGO1.ip
(1)
AGO2.ip
(8)
B-CELL
(2)
BREAST
(25)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(3)
LIVER
(2)
OTHER
(2)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
AAAGTTATCCTGCACAAGAAACGTTATATTTACAGAAAAATTAAAGGATGGTAAGTAAAAGAATTTTCTTTTTTTTCTTTTTGATTTGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTAGGGCAGTCTTGGCTCACTGCAACGTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGTCGCACACCACCACACCTGGCTTATTTTTGCATTTTTAGTAGA
....................................................(((.(((((((......)))))))))).........(((((..((.(((.....))))).(((.(((......))).))).)))))................................................................................................................
..................................................51......................................................................................139.............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR038862(GSM458545)
MM472. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR038855(GSM458538)
D10. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR038854(GSM458537)
MM653. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
.....................................................................................................................GCAGTAGGGCAGTCTCGG...................................................................................................................185.000.00---4.00--------------------------1.00------------------
.............................................................AATTTTCTTTTTTTTCTTTTACG......................................................................................................................................................................235.000.00--3.00----------2.00-----------------------------------
..................................................................TCTTTTTTTTCTTTTTGATGCGG.................................................................................................................................................................233.000.00-3.00-----------------------------------------------
.............................................................AATTTTCTTTTTTTTCTTACG........................................................................................................................................................................212.000.00--1.00--------------1.00-------------------------------
.................................................................................................................................TCTTGGCTCACTGCAACGTCCGCCTCCTCT...........................................................................................301.000.001.00------------------------------------------------
...............................................................TTTTCTTTTTTTTCTTTTTGATCAGC.................................................................................................................................................................261.000.001.00------------------------------------------------
..............................................................................................................................................................................................................................CCTGGCTTATTTTTGCATTTTTAGCAG.271.000.00----1.00--------------------------------------------
...............................................................TTTTCTTTTTTTTCTTTTTGACC....................................................................................................................................................................231.000.001.00------------------------------------------------
..............................................................ATTTTCTTTTTTTTCTTTTTAATT....................................................................................................................................................................241.000.001.00------------------------------------------------
.....................................................................................................................................................................................................................................TATTTTTGCATTTTTAGTAGGG221.000.00-1.00-----------------------------------------------
.............................................................AATTTTCTTTTTTTTCACTA.........................................................................................................................................................................201.000.00-1.00-----------------------------------------------
..............................................................ATTTTCTTTTTTTTCTTTCTCG......................................................................................................................................................................221.000.00--1.00----------------------------------------------
......................................................................................................................................................................................................................CCACCACACCTGGCTTATTTTAGCT...........251.000.001.00------------------------------------------------
..............................................................ATTTTCTTTTTTTTCTTTAGC.......................................................................................................................................................................211.000.001.00------------------------------------------------
.................................................................................................................................TCTTGGCTCACTGCAACGTCCGCCTGCCG............................................................................................291.000.001.00------------------------------------------------
...........................................................................................................................................................................................................ACAGTCGCACACCACCACACCTGGCTTTTGC................311.000.001.00------------------------------------------------
....................................................................................................................................TGGCTCACTGCAACGTCCGCCCGGG.............................................................................................251.000.00-1.00-----------------------------------------------
...........................................................................................................AGGCTGGAGTGCAGTAGGCCGG.........................................................................................................................221.000.00-1.00-----------------------------------------------
.........................................................AAAGAATTTTCTTTTTATCG.............................................................................................................................................................................201.000.00---------1.00---------------------------------------
.............................................................AATTTTCTTTTTTTTCTTCCG........................................................................................................................................................................211.000.00---------------------------------------1.00---------
..................................................................................................................................CTTGGCTCACTGCAACGTCCGCCTCCTGCG..........................................................................................301.000.00-1.00-----------------------------------------------
......................................AATTAAAGGATGGTAAGTAAA...............................................................................................................................................................................................2121.001.00-----------1.00-------------------------------------
...........................................................................................................AGGCTGGAGTGCAGTAGGGTGTG........................................................................................................................231.000.001.00------------------------------------------------
..............................................................ATTTTCTTTTTTTTCGGC..........................................................................................................................................................................181.000.00-1.00-----------------------------------------------
........................................................................................................................................TCACTGCAACGTCCGCCTCCTGCGCT........................................................................................261.000.00-1.00-----------------------------------------------
...............................................................................................................................AGTCTTGGCTCACTGCAATA.......................................................................................................201.000.00-----------1.00-------------------------------------
.............................................................AATTTTCTTTTTTTTCTAGTG........................................................................................................................................................................211.000.00--1.00----------------------------------------------
.................................................................................................................................TCTTGGCTCACTGCAACGTCCGCCACCC.............................................................................................281.000.001.00------------------------------------------------
......................................................................................................................................................................................................................CCACCACACCTGGCTTATTTAGTT............241.000.001.00------------------------------------------------
.............................................................AATTTTCTTTTTTTTCTTTAAC.......................................................................................................................................................................221.000.001.00------------------------------------------------
...............................................................TTTTCTTTTTTTTCTTTTTGTTGG...................................................................................................................................................................241.000.001.00------------------------------------------------
......................................................................................................................................GCTCACTGCAACGTCCGCCTCCTGGGTC........................................................................................281.000.001.00------------------------------------------------
........................................................AAAAGAATTTTCTTTTGCTC..............................................................................................................................................................................201.000.00---------1.00---------------------------------------
...............................................................................................................................................................GTTCAAGTGATTCTCCTGCCTAAAA..................................................................251.000.00-------------------------------1.00-----------------
.......................................................................................................ACCCAGGCTGGAGTGCAGTAGGTCA..........................................................................................................................251.000.001.00------------------------------------------------
..........................................................................................................................................................................................................TACAGTCGCACACCACCACACCGGCG......................261.000.001.00------------------------------------------------
..........................................................................................................................................ACTGCAACGTCCGCCTCCTGGGCTG.......................................................................................251.000.00-1.00-----------------------------------------------
.............................................................AATTTTCTTTTTTTTCTAGGG........................................................................................................................................................................211.000.00--1.00----------------------------------------------
.......................................................................................................................................CTCACTGCAACGTCCGCCTCCTGGGCTG.......................................................................................281.000.00-1.00-----------------------------------------------
................................................................................................................................GTCTTGGCTCACTGCAATCTC.....................................................................................................211.000.00----------------------1.00--------------------------
.............................................................AATTTTCTTTTTTTTCACAG.........................................................................................................................................................................201.000.001.00------------------------------------------------
....................................................................................................................................TGGCTCACTGCAACGTCCGCCTCCGGGT..........................................................................................281.000.001.00------------------------------------------------
..............................................................ATTTTCTTTTTTTTCTTGTAG.......................................................................................................................................................................211.000.00-1.00-----------------------------------------------
..........................................................................TTCTTTTTGATTTGGAGTCTCGCTG.......................................................................................................................................................251.000.00-1.00-----------------------------------------------
.............................................................AATTTTCTTTTTTTTCTTTGATC......................................................................................................................................................................231.000.00-1.00-----------------------------------------------
..................................................................................................................................................GTCCGCCTCCTGGGTTCACTGC..................................................................................221.000.00-1.00-----------------------------------------------
....................................................................................................................................TGGCTCACTGCAACGTCCGCCTCCGGG...........................................................................................271.000.001.00------------------------------------------------
......................................................................................................................................GCTCACTGCAACGTCCGCCTCCGGGT..........................................................................................261.000.001.00------------------------------------------------
..................................................................................................................................................................CAAGTGATTCTCCTGCCTAAAA..................................................................221.000.00------------------1.00------------------------------
...........................................................................................................................................................................................................ACAGTCGCACACCACCACACCTGGC......................2540.500.500.50------------------------------------------------
.................................................................................................................GAGTGCAGTAGGGCAGTCT......................................................................................................................1950.400.40---0.40---------------------------------------------
...........................................................................................................AGGCTGGAGTGCAGTAGGGCAGTC.......................................................................................................................2440.250.25-----------------------------------------------0.25-
........................................................................................................CCCAGGCTGGAGTGCAGTAGGGCAG.........................................................................................................................2540.250.25----------------------------------------------0.25--
.............................................................................................................GCTGGAGTGCAGTAGGGCAGTC.......................................................................................................................2240.250.25---------------------------------------------0.25---
..........................................................................................................CAGGCTGGAGTGCAGTAGGGCAGT........................................................................................................................2450.200.20------------------------------------------------0.20

Antisense strand
AAAGTTATCCTGCACAAGAAACGTTATATTTACAGAAAAATTAAAGGATGGTAAGTAAAAGAATTTTCTTTTTTTTCTTTTTGATTTGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTAGGGCAGTCTTGGCTCACTGCAACGTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGTCGCACACCACCACACCTGGCTTATTTTTGCATTTTTAGTAGA
....................................................(((.(((((((......)))))))))).........(((((..((.(((.....))))).(((.(((......))).))).)))))................................................................................................................
..................................................51......................................................................................139.............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR038862(GSM458545)
MM472. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR038855(GSM458538)
D10. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR038854(GSM458537)
MM653. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
.........................................................................................................................................CACTGCAACGTCCGCCTCCTGGGTTT....................................................................................... 267.000.00------------2.00-------------1.001.00-1.00--1.00----1.00-----------
...........................................................................................................................................CTGCAACGTCCGCCTCCTGGGTTA....................................................................................... 242.000.00---------------1.00------------1.00--------------------
...................................................................................ATTTGGAGTCTCGCTTC...................................................................................................................................................... 172.000.00----2.00--------------------------------------------
..............................................................................................................................................CAACGTCCGCCTCCTGGGTTAA...................................................................................... 222.000.00----------2.00--------------------------------------
.................................................................................................................................................................................................AGCTGGGATTACAGTCGTCTG.................................... 212.000.00-------2.00-----------------------------------------
.............................................................................................................................................GCAACGTCCGCCTCCTGGGTTCAGA.................................................................................... 252.000.002.00------------------------------------------------
.......................................................................................................................................................................................................................CACCACACCTGGCTTAACAA............... 202.000.00-----2.00-------------------------------------------
...........................................................................................................................................CTGCAACGTCCGCCTCCTGGGTTAAA..................................................................................... 262.000.00--------2.00----------------------------------------
..............................................................................................................................................CAACGTCCGCCTCCTGGGTTAAAA.................................................................................... 242.000.00------2.00------------------------------------------
......................................................................................................................................................................................................................CCACCACACCTGGCTTAAGA................ 201.000.00--------------------1.00----------------------------
...........................................................................................................................................CTGCAACGTCCGCCTCCTGGGTTCGT..................................................................................... 261.000.00-----------------------------------1.00-------------
......................................................................................................................................................GCCTCCTGGGTTCAAGTGATTCTCCTGCGCA..................................................................... 311.000.00------------------------------------1.00------------
...................................................................................................................................................TCCGCCTCCTGGGTTCAAGTGATTCTCCTGTT....................................................................... 321.000.00----------------------------------1.00--------------
...........................................................................................................................................CTGCAACGTCCGCCTCCTGGGTTGTA..................................................................................... 261.000.00----------------1.00--------------------------------
......................................................................................................................................................................................................................CCACCACACCTGGCTTAAAAG............... 211.000.00---------------------1.00---------------------------
....................................................................................................................................TGGCTCACTGCAACGTCCGCCTCCTGGGTGG....................................................................................... 311.000.001.00------------------------------------------------
.................................................................................................................................................CGTCCGCCTCCTGGGTTCACCGC.................................................................................. 231.000.00-1.00-----------------------------------------------
....................................................................................................................................................CCGCCTCCTGGGTTCAAGTGCGGG.............................................................................. 241.000.00------------------------------------------1.00------
.....................................................................................................................................GGCTCACTGCAACGTCCGCCTGGGA............................................................................................ 251.000.00-1.00-----------------------------------------------
.....................................................................................................................................................................................................................ACCACCACACCTGGCTTAATA................ 211.000.00------------------------1.00------------------------
.........................................................................................................................................CACTGCAACGTCCGCCTCCTGGGTTTTT..................................................................................... 281.000.00-------------------------------------------1.00-----
.....................................................................................................................................AGGCGGACGTTGCAGTGAGCC................................................................................................ 2101.001.00-----------------------1.00-------------------------
..............................................................................................................................................CAACGTCCGCCTCCTGGGTTAGA..................................................................................... 231.000.00-------------------------1.00-----------------------
.....................................................................................................................................................CGCCTCCTGGGTTCAAGTCCGG............................................................................... 221.000.00-------------------1.00-----------------------------
............................................................................................................................................TGCAACGTCCGCCTCCTGGGTTCCA..................................................................................... 251.000.00-1.00-----------------------------------------------
......................................................................................................................................................................................................................CCACCACACCTGGCTTAGACA............... 211.000.00-----------------------------------------1.00-------
....................................................................................................................................................CCGCCTCCTGGGTTCAAGTGATTCTCCTTA........................................................................ 301.000.00---------------------------------1.00---------------
...........................................................................................................................................................................................................ACAGTCGCACACCACCGGTC........................... 201.000.00----------------------------------------1.00--------
......................................................................................................................................................GCCTCCTGGGTTCAAGTGATTCTCCTTCG....................................................................... 291.000.00--------------------------------------1.00----------
......................................................................................................................................................GCCTCCTGGGTTCAAGTGATTCTCCTGCTAG..................................................................... 311.000.00----1.00--------------------------------------------
......................................................................................................................................................................................................................CCACCACACCTGGCTTAAAC................ 201.000.00--------------1.00----------------------------------
..................................................................................................................................................GTCCGCCTCCTGGGTTCCCTG................................................................................... 211.000.001.00------------------------------------------------
..................................................................................................................................................................................................GGTGGTGTGCGACTGTAATCCCAGC............................... 2580.500.50--------------------------------------------0.50----