ID: uc009xgh.1_intron_5_0_chr1_236718956_r
GENE: (21)
chr1:236718906-236719154-


(1)
AGO2.ip 		(4)
B-CELL 		(4)
BREAST 		(9)
CELL-LINE 		(1)
CERVIX 		(2)
HELA 		(2)
LIVER 		(3)
OTHER 		(4)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TAACCGCCTTTTTCCTGGAAGCCCTGGACTTCCGAGCCCAGCACTCTGAGGTAAGCTCAGGTTCACTCCTCCAAATCCTAAAGCTGTTATCCACCTATTGAAGAGTCCGAGAACAATCTAGCCGTGTAACAGTGGTACTTGCCAAAATAATTTACAGTCAGGTATCAGCACTCTAATAAATGGGCTCTTCTGTTTTCAGAACGATCTGGAGGAAGTTGGAAAAACGGAAAATTGTATCATTGACTGTCT
.....................................................((((.(((...............)))..))))........((((((..(((((..((.....((((.((.(((......((((....))))........))).)).)))).))...)))))....)))))).................................................................
..................................................51....................................................................................................................................185..............................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189784DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR040008(GSM532893)
G727N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
..................................................................................................................................................................TATCAGCACTCTAATATTG....................................................................1930.000.00-29.00-1.00---------------------------
.......................................................................................................................................TACTTGCCAAAATAATTTACAGTCAGGTATCAGCACTCTAATAAATGGGCTCTTCTGTTTTCAGTT................................................669.000.00--9.00----------------------------
..................................................................................................................................................................TATCAGCACTCTAATGTTG....................................................................194.000.00-3.00---------------------1.00-------
..................................................................................................................................................................TATCAGCACTCTAATATTC....................................................................194.000.00-4.00-----------------------------
.......................................................................................................................................................................................................AACGATCTGGAGGAAGTTGGA.............................2113.003.00------3.00------------------------
.......................................................................................................................................................................................................AACGATCTGGAGGAAGTTGGAAAAACGGA.....................2912.002.00-----------------2.00-------------
..................................................................................................................................................................TATCAGCACTCTAATATCT....................................................................192.000.00-2.00-----------------------------
........................................................TCAGGTTCACTCCTCTCG...............................................................................................................................................................................182.000.00-2.00-----------------------------
.....................................................................................................................................................................................................AGAACGATCTGGAGGAAGTTGG..............................2212.002.00-------2.00-----------------------
......................CCTGGACTTCCGAGCCCAGCACTCTGAG.......................................................................................................................................................................................................2812.002.00----------2.00--------------------
...........................................................................................................................................................................................................ATCTGGAGGAAGTTGGAAAAACG.......................2312.002.00--------1.00----------------1.00-----
..................................................................................................................................................................TATCAGCACTCTAATATTT....................................................................192.000.00-1.00-1.00---------------------------
.........................................................................................................................................................................................................CGATCTGGAGGAAGTTGGAAAAA.........................2311.001.00---------------1.00---------------
..................................................................................................................................................................TATCAGCACTCTAATTTTG....................................................................191.000.00-1.00-----------------------------
....................................................................................................................................................................................................................................AAATTGTATCATTGACTG...1811.001.00--------------------------1.00----
.....................................................................................................................................................................................................AGAACGATCTGGAGGAAGTTGGAAAAACGG......................3011.001.00-------------------1.00-----------
......................................................................................................................................................................................................................GTTGGAAAAACGGAAAATTGTA.............2211.001.00--------------------1.00----------
..................................................................................................................................................................TATCAGCACTCTAATAGTT....................................................................191.000.00-1.00-----------------------------
..................................................................................................................................................................................................................................GAAAATTGTATCATTGA......1711.001.001.00------------------------------
..................................................................................................................................................................................................................GGAAGTTGGAAAAACGGAAAATTGTATC...........2811.001.00---------------1.00---------------
..................................................................................................................................................................TATCAGCACTCTAATCTCG....................................................................191.000.00-1.00-----------------------------
..................................................................................................................................................................TATCAGCACTCTAATAATT....................................................................191.000.00-1.00-----------------------------
..................................................................................................................................................................TATCAGCACTCTAATCTTT....................................................................191.000.00---1.00---------------------------
........................................................................................................................................................................................................................TGGAAAAACGGAAAATTGTATCA..........2311.001.00-----------1.00-------------------
................................................................................................................................................................................................................GAGGAAGTTGGAAAAACGG......................1911.001.00--------1.00----------------------
..................................................................................................................................................................TATCAGCACTCTAATATCG....................................................................191.000.00-1.00-----------------------------
.................................................................................................................................................................................................................AGGAAGTTGGAAAAACGGAA....................2011.001.00---------1.00---------------------
..........................................................................................................................................................................CTCTAATAAATGGGCGG..............................................................171.000.00----------------------------1.00--
.......................................................................................................................................................................................................AACGATCTGGAGGAAGTTGGAA............................2211.001.00----------------1.00--------------
........................................................................................................................................................................................................................TGGAAAAACGGAAAATTG...............1811.001.00----1.00--------------------------
..................................................................................................................................................................TATCAGCACTCTAATACTG....................................................................191.000.00-1.00-----------------------------
........................................................................................................................................................................................................ACGATCTGGAGGAAGGT................................171.000.00---------------------1.00---------
..............................................................................................................................................................................................................TGGAGGAAGTTGGAAAAACG.......................2011.001.00------------------------1.00------
..................................................................................................................................................................TATCAGCACTCTAATTTAG....................................................................191.000.00-1.00-----------------------------
.................................................................................................................................................................................................................AGGAAGTTGGAAAAACGG......................1811.001.00------------------1.00------------
.....................................................................TCCAAATCCTAAAGCTCA..................................................................................................................................................................181.000.00---------1.00---------------------
...........................................................................................................................................................................................................ATCTGGAGGAAGTTGGAAAAACGGAA....................2611.001.00-------1.00-----------------------
................................................................................................................................................................................................................................CGGAAAATTGTATCATTGA......1911.001.00----1.00--------------------------
........................TGGACTTCCGAGCCCAGCACTCTGAGA......................................................................................................................................................................................................271.000.00--------------1.00----------------
..................................................................................................................................................................................................................................GAAAATTGTATCATTGACA....191.000.00-----1.00-------------------------
...........................................................................................CACCTATTGAAGAGTCCGAGAACAATA...................................................................................................................................271.000.00------------1.00------------------
..................................................................................................................................................................TATCAGCACTCTAATATAG....................................................................191.000.00-1.00-----------------------------
.....................................................................................................................................................................................................AGAACGATCTGGAGGAAGTTGGAA............................2411.001.00---------------------------1.00---
...............................................................................................TATTGAAGAGTCCGAGAA........................................................................................................................................1811.001.00--------1.00----------------------
.............................................................................................................AGAACAATCTAGCCGCTG..........................................................................................................................181.000.00---------1.00---------------------
..............................................................................................................................................................................................................................AACGGAAAATTGTATCATTGACT....2311.001.00--------------1.00----------------
........................................................................................................................................................................................................................TGGAAAAACGGAAAATTGTA.............2011.001.00----1.00--------------------------
...............................................................................................................................................................................................................GGAGGAAGTTGGAAAAACGGAA....................2211.001.00-----------1.00-------------------
..............................................................................................................................................................................................................................AACGGAAAATTGTATCAT.........1820.500.50------------------0.50------------
................................CGAGCCCAGCACTCT..........................................................................................................................................................................................................1530.330.33-----------------------------0.33-

Antisense strand
TAACCGCCTTTTTCCTGGAAGCCCTGGACTTCCGAGCCCAGCACTCTGAGGTAAGCTCAGGTTCACTCCTCCAAATCCTAAAGCTGTTATCCACCTATTGAAGAGTCCGAGAACAATCTAGCCGTGTAACAGTGGTACTTGCCAAAATAATTTACAGTCAGGTATCAGCACTCTAATAAATGGGCTCTTCTGTTTTCAGAACGATCTGGAGGAAGTTGGAAAAACGGAAAATTGTATCATTGACTGTCT
.....................................................((((.(((...............)))..))))........((((((..(((((..((.....((((.((.(((......((((....))))........))).)).)))).))...)))))....)))))).................................................................
..................................................51....................................................................................................................................185..............................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189784DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR040008(GSM532893)
G727N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
..................................................................................................................................................................................................................................GAAAATTGTATCATTGACC.... 1953.000.0049.00----1.00-------2.00--1.00--------------
.................................................................................................................................................................................................................................GGAAAATTGTATCATTGCC..... 192.000.002.00------------------------------
..................................................................................................................................................................................................................................GAAAATTGTATCATTGAC..... 181.000.001.00------------------------------
..................................................................................................................................................................................................................................GAAAATTGTATCATTGATC.... 191.000.00-----1.00-------------------------
.................................................................................................................CTGTTACACGGCTAGATTG..................................................................................................................... 1911.001.00------------1.00------------------
......................................CAGCACTCTGAGGTAATGAG............................................................................................................................................................................................... 201.000.00----------------------1.00--------
....................................................................................................................................................................TTTATTAGAGTGCTGA..................................................................... 1640.250.25------------------------------0.25