ID: uc009xdy.1_intron_0_0_chr1_222731611_r
GENE: TAF1A(4)
chr1:222731561-222732014-


(1)
BRAIN
(4)
BREAST
(11)
CELL-LINE
(1)
HELA
(1)
LIVER
(9)
OTHER
(3)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TCCAAGACTCTGATACTGAATTTTAGTTATTTCACAGTTGTAGCTACACAGTAAGTAGCTTGGTAGATAGTTATTGAATGTATTTATGTAGTGTATTAAGAAGCTTATATTACTACAAAAAACTTATTTTTATATATTTTTATATTTTTGTATTATTTATAGCTAGAGAAACAATATTACTGCCTTTGCTCTTTGTAACTATGTCTGTTTTCTTTTTTGTAATGTTAAATGTTACATTTGTTAAGGAATAATTCTTCAAATGACAAACTAATTACAGAATATAGCTCTACAGCAGTTATTGTTTGCAAATACTTTGCCTCTTGCTATTGTGTAATAAACTGTAACTTGTAGTGCTGTGAAATGTATTTATATTCTACTTTTATATTCTAATTAATCCATTTTAGGTATACCACCATGAAGAAATATATTGGTGATGAGTTCTATTGAGGAATTT
...........................................................................(((((..(((.(((((((...((((...))))...))))))).)))...))))).....................................................................................................................................................................................................................................................................................................................................
...................................................................68.............................................................131.................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR343336SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR343334SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR189783SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR189786SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343337
.......................................................................................................CTTATATTACTACAAAAAACTTATTT.....................................................................................................................................................................................................................................................................................................................................26130.0030.0015.008.006.00---1.00------------------------
.......................................................................................................CTTATATTACTACAAAAAACTTAT.......................................................................................................................................................................................................................................................................................................................................24114.0014.005.007.002.00----------------------------
........................................................................ATTGAATGTATTTATGTAGTGTATT.....................................................................................................................................................................................................................................................................................................................................................................2515.005.00----5.00--------------------------
.....................................................................................................................................................................................................................................................................................................................................................TAACTTGTAGTGCTGTGAAATGT..........................................................................................2313.003.00---3.00---------------------------
..........................................................................................................................CTTATTTTTATATATTTTTATATTTTTG................................................................................................................................................................................................................................................................................................................2813.003.00-1.00----1.00-1.00----------------------
.................................................................................................................................................................................................................................................................................ACAGAATATAGCTCTACAGCA................................................................................................................................................................2113.003.00---3.00---------------------------
.......................................................................................................CTTATATTACTACAAAAAACTTATTC.....................................................................................................................................................................................................................................................................................................................................262.000.001.00-1.00----------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................CTAATTAATCCATTTTAGA.................................................192.000.00---2.00---------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGATGAGTTCTATTGAGG.....2212.002.00-------------2.00-----------------
............................................................................................................................TATTTTTATATATTTTTATATTTTTG................................................................................................................................................................................................................................................................................................................2612.002.00-2.00-----------------------------
...........................................................................................................................................................................................................................................................................CTAATTACAGAATATAGCTCTACAGCA................................................................................................................................................................2711.001.00------------------1.00------------
..........................................................................................................ATATTACTACAAAAAACTTATTT.....................................................................................................................................................................................................................................................................................................................................2311.001.00-1.00-----------------------------
...........................................................................................................................TTATTTTTATATATTTTTATATTTTTG................................................................................................................................................................................................................................................................................................................2711.001.00-----1.00-------------------------
........................................................................................................................................................................................................................................................................................ATAGCTCTACAGCAGTTATTGTTTGC....................................................................................................................................................2611.001.00--------------------1.00----------
........................................................................................................................................................................AAACAATATTACTGCCTTTGCTCTTTG...................................................................................................................................................................................................................................................................2711.001.00-----1.00-------------------------
........TCTGATACTGAATTTTAGTTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00---1.00---------------------------
.......................................................................................................CTTATATTACTACAAAAAACTTCT.......................................................................................................................................................................................................................................................................................................................................241.000.001.00------------------------------
..........................................................................................................................CTTATTTTTATATATTTTTATATTTCTG................................................................................................................................................................................................................................................................................................................281.000.00-1.00-----------------------------
.......................................................................................................CTTATATTACTACAAAAAACTTAC.......................................................................................................................................................................................................................................................................................................................................241.000.00-1.00-----------------------------
............................................................................................................................................................................................................................................................................................................................................................................ATTTATATTCTACTTTTATTTTG...................................................................231.000.00--------1.00----------------------
...............................................................................................................................................................................................................................................GTTAAGGAATAATTCTTCAAATG................................................................................................................................................................................................2311.001.00----------------1.00--------------
...........................................................................................................................TTATTTTTATATATTTTTATATTGAG.................................................................................................................................................................................................................................................................................................................261.000.00------1.00------------------------
.........................................................................................................................................................................................................................................................................................TAGCTCTACAGCAGTTATTGTTTGC....................................................................................................................................................2511.001.00-----------1.00-------------------
........................................................................................................................................................................................................................................................................AAACTAATTACAGAATCCGT..........................................................................................................................................................................201.000.00----------------------1.00--------
..........................................................................................................................CTTATTTTTATATATTTTTATATTTTTA................................................................................................................................................................................................................................................................................................................281.000.00-1.00-----------------------------
.......................................................................................................................................................................................................................................................................................................................................................ACTTGTAGTGCTGTGAAAAAA..........................................................................................211.000.00--------------1.00----------------
..............................................................................................................................................................................................................................................................................................................................................................................................TATTCTAATTAATCCATTTTAGA.................................................231.000.00---------------------------1.00---
...........................................................................................................................................................................................................TCTGTTTTCTTTTTTGTCT........................................................................................................................................................................................................................................191.000.00-----------1.00-------------------
.............................................ACACAGTAAGTAGCTTGGTAGACAG................................................................................................................................................................................................................................................................................................................................................................................................251.000.00-----------1.00-------------------
.........................................................................................................................ACTTATTTTTATATATTTTTATATTTTT.................................................................................................................................................................................................................................................................................................................2811.001.00------------1.00------------------
..........................................................................................................ATATTACTACAAAAAACTTAT.......................................................................................................................................................................................................................................................................................................................................2111.001.00--1.00----------------------------
.............................................................................................................................ATTTTTATATATTTTTATATATTG.................................................................................................................................................................................................................................................................................................................241.000.00--------1.00----------------------
..............................................................................................................................................................................................................................................................................................................................................................................................TATTCTAATTAATCCATTTTAGAA................................................241.000.00--------------------------1.00----
.......................................................................................................CTTATATTACTACAAAAAACTCAT.......................................................................................................................................................................................................................................................................................................................................241.000.00-1.00-----------------------------
.............................................................................................................TTACTACAAAAAACTTAT.......................................................................................................................................................................................................................................................................................................................................1821.001.001.00------------------------------
.......................................................................................................CTTATATTACTACAAAAA.............................................................................................................................................................................................................................................................................................................................................1811.001.001.00------------------------------
.................................................................................................................................................................................................................................................................................ACAGAATATAGCTCTACAGCAGTTA............................................................................................................................................................2511.001.001.00------------------------------
............................................................................................................ATTACTACAAAAAACTTATTT.....................................................................................................................................................................................................................................................................................................................................2111.001.001.00------------------------------
.........................................................................................................................ACTTATTTTTATATATTTTTATATTTTTG................................................................................................................................................................................................................................................................................................................2911.001.00------1.00------------------------
......................................................................................................................................................................................................................................................................................................................................................AACTTGTAGTGCTGTGAAAAAA..........................................................................................221.000.00---------------1.00---------------
....................................................................................................................................................................AGAGAAACAATATTACTGCCTCCG..........................................................................................................................................................................................................................................................................241.000.00-------------------------1.00-----
..............................................................................................................................TTTTTATATATTTTTATATTTTTTAT..............................................................................................................................................................................................................................................................................................................261.000.00--------1.00----------------------
..........................................................................................................................................................................................................................................................................................................................TGCCTCTTGCTATTGTGTAATAAA....................................................................................................................2411.001.00---------------------1.00---------
..........................................................................................................ATATTACTACAAAAAACTTATTTTTATATATTT...........................................................................................................................................................................................................................................................................................................................3311.001.00--1.00----------------------------
.......................................................................................................CTTATATTACTACAAAAAACTTACTT.....................................................................................................................................................................................................................................................................................................................................261.000.00-1.00-----------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................TTATATTCTAATTAAGAC.........................................................181.000.001.00------------------------------
................................................................................................................................................................................................................................................................................................................................................................................ATATTCTACTTTTATATT....................................................................1811.001.00-------------------1.00-----------
.......................................................................................................CTTATATTACTACAAAAAACTTATAT.....................................................................................................................................................................................................................................................................................................................................2611.0014.001.00------------------------------

Antisense strand
TCCAAGACTCTGATACTGAATTTTAGTTATTTCACAGTTGTAGCTACACAGTAAGTAGCTTGGTAGATAGTTATTGAATGTATTTATGTAGTGTATTAAGAAGCTTATATTACTACAAAAAACTTATTTTTATATATTTTTATATTTTTGTATTATTTATAGCTAGAGAAACAATATTACTGCCTTTGCTCTTTGTAACTATGTCTGTTTTCTTTTTTGTAATGTTAAATGTTACATTTGTTAAGGAATAATTCTTCAAATGACAAACTAATTACAGAATATAGCTCTACAGCAGTTATTGTTTGCAAATACTTTGCCTCTTGCTATTGTGTAATAAACTGTAACTTGTAGTGCTGTGAAATGTATTTATATTCTACTTTTATATTCTAATTAATCCATTTTAGGTATACCACCATGAAGAAATATATTGGTGATGAGTTCTATTGAGGAATTT
...........................................................................(((((..(((.(((((((...((((...))))...))))))).)))...))))).....................................................................................................................................................................................................................................................................................................................................
...................................................................68.............................................................131.................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR343336SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR343334SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR189783SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR189786SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343337
..................................................................................TTTATGTAGTGTATTAACG................................................................................................................................................................................................................................................................................................................................................................. 196.000.00-------4.00----------------1.00-----1.00
......................................................................TTATTGAATGTATTTATATG............................................................................................................................................................................................................................................................................................................................................................................ 203.000.00-----1.00---2.00---------------------
.................................................................................................................................................TTTTGTATTATTTATCTG................................................................................................................................................................................................................................................................................................... 182.000.00----------2.00--------------------
.......................................................................................................................................................................................................................................................................................................................CTTTGCCTCTTGCTAATCG............................................................................................................................ 191.000.00------------1.00------------------
....................................................................................TATGTAGTGTATTAATAG................................................................................................................................................................................................................................................................................................................................................................ 181.000.00----------1.00--------------------
....................................................AAGTAGCTTGGTAGACTG................................................................................................................................................................................................................................................................................................................................................................................................ 181.000.00---------1.00---------------------
......................................................................................................................................................................................AGTTACAAAGAGCAAAGG.............................................................................................................................................................................................................................................................. 1811.001.00-----------------1.00-------------
.................................................................................................................................................................................................................................................................................................................................................................................................TCTAATTAATCCATTTT.................................................... 171.000.00----------------------------1.00--
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGGTGATGAGTCATG........... 191.000.00-----1.00-------------------------
........................................................................................................................................................................................................ATGTCTGTTTTCTTTTTTCATA........................................................................................................................................................................................................................................ 221.000.00-----------------------------1.00-
.....................................................................AAATACATTCAATAAC................................................................................................................................................................................................................................................................................................................................................................................. 1690.220.220.22------------------------------
........................................................................................................................................................................................................................................................................................................................................TACAGTTTATTACAC............................................................................................................... 1580.120.120.12------------------------------